Wall clock time and date at job start Tue Mar 31 2020 23:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.57682 * 2 1 4 4 C 1.53110 * 109.59682 * 239.88967 * 2 1 3 5 5 O 1.42902 * 109.48826 * 182.58159 * 4 2 1 6 6 C 1.42898 * 114.09974 * 61.10266 * 5 4 2 7 7 C 1.53085 * 109.41776 * 298.84479 * 6 5 4 8 8 C 1.53172 * 109.52379 * 120.16354 * 2 1 3 9 9 H 1.09003 * 109.54866 * 56.93127 * 8 2 1 10 10 C 1.52997 * 109.54462 * 296.74951 * 8 2 1 11 11 N 1.46498 * 109.47154 * 175.17875 * 10 8 2 12 12 S 1.65605 * 120.00101 * 165.00471 * 11 10 8 13 13 O 1.42100 * 106.39770 * 311.45361 * 12 11 10 14 14 O 1.42097 * 106.40214 * 178.54083 * 12 11 10 15 15 C 1.76196 * 107.21832 * 64.99679 * 12 11 10 16 16 C 1.38655 * 119.87552 * 90.00249 * 15 12 11 17 17 C 1.38618 * 120.49863 * 179.97438 * 16 15 12 18 18 C 1.37636 * 120.25095 * 0.02562 * 17 16 15 19 19 C 1.40705 * 119.74340 * 0.02562 * 18 17 16 20 20 C 1.41389 * 120.24258 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00285 * 150.24130 * 20 19 18 22 22 C 1.39944 * 120.00470 * 330.24858 * 20 19 18 23 23 N 1.30817 * 120.00398 * 161.71131 * 22 20 19 24 24 Si 1.86806 * 119.99583 * 341.71163 * 22 20 19 25 25 H 1.48503 * 109.47327 * 95.41390 * 24 22 20 26 26 H 1.48502 * 109.46913 * 215.41554 * 24 22 20 27 27 H 1.48499 * 109.47052 * 335.41088 * 24 22 20 28 28 C 1.37599 * 119.87223 * 269.72244 * 15 12 11 29 29 H 1.09006 * 109.46899 * 299.83977 * 1 2 3 30 30 H 1.09002 * 109.47238 * 59.83530 * 1 2 3 31 31 H 1.08999 * 109.47362 * 179.83870 * 1 2 3 32 32 H 1.08993 * 109.48103 * 62.54445 * 4 2 1 33 33 H 1.09003 * 109.41304 * 302.56213 * 4 2 1 34 34 H 1.09005 * 109.47746 * 178.85633 * 6 5 4 35 35 H 1.09001 * 109.47820 * 58.83448 * 6 5 4 36 36 H 1.08994 * 109.52511 * 297.70004 * 7 6 5 37 37 H 1.09007 * 109.52042 * 177.51378 * 7 6 5 38 38 H 1.08999 * 109.47160 * 55.17990 * 10 8 2 39 39 H 1.09000 * 109.46926 * 295.17749 * 10 8 2 40 40 H 0.97004 * 120.00580 * 344.99585 * 11 10 8 41 41 H 1.07997 * 119.74879 * 359.97438 * 16 15 12 42 42 H 1.08001 * 119.87370 * 180.02562 * 17 16 15 43 43 H 1.07994 * 120.12903 * 180.02562 * 18 17 16 44 44 H 0.97005 * 120.00100 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.13333 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0435 -0.7236 -1.2478 5 8 3.4712 -0.7750 -1.2154 6 6 4.0043 -1.4835 -0.0948 7 6 3.5716 -0.7892 1.1991 8 6 2.0419 -0.7254 1.2482 9 1 1.6355 -1.7365 1.2748 10 6 1.6013 0.0364 2.4997 11 7 1.9917 -0.7179 3.6933 12 16 1.9842 0.0177 5.1770 13 8 2.6735 1.2500 5.0173 14 8 2.3724 -0.9735 6.1183 15 6 0.3111 0.4277 5.5474 16 6 -0.4895 -0.4812 6.2222 17 6 -1.8074 -0.1718 6.5207 18 6 -2.3357 1.0434 6.1488 19 6 -1.5328 1.9731 5.4626 20 6 -2.0648 3.2244 5.0751 21 1 -1.4190 4.0871 5.0035 22 6 -3.4284 3.3453 4.7844 23 7 -3.9938 4.5250 4.7778 24 14 -4.4413 1.8220 4.4059 25 1 -5.1178 1.3572 5.6435 26 1 -5.4612 2.1488 3.3772 27 1 -3.5501 0.7492 3.8960 28 6 -0.1942 1.6509 5.1709 29 1 -0.3633 0.5114 0.8915 30 1 -0.3634 0.5164 -0.8885 31 1 -0.3634 -1.0276 -0.0029 32 1 1.7191 -0.1863 -2.1389 33 1 1.6437 -1.7375 -1.2689 34 1 5.0927 -1.4937 -0.1555 35 1 3.6303 -2.5073 -0.1007 36 1 3.9793 0.2213 1.2242 37 1 3.9403 -1.3531 2.0560 38 1 0.5185 0.1611 2.4868 39 1 2.0797 1.0157 2.5162 40 1 2.2546 -1.6484 3.6147 41 1 -0.0834 -1.4373 6.5175 42 1 -2.4219 -0.8872 7.0471 43 1 -3.3626 1.2826 6.3827 44 1 -4.9389 4.6088 4.5759 45 1 0.4324 2.3590 4.6491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586774196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:46 Heat of formation + Delta-G solvation = -143.198694 kcal Electronic energy + Delta-G solvation = -28064.922403 eV Core-core repulsion = 24172.263176 eV Total energy + Delta-G solvation = -3892.659227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67411 -39.69541 -38.32255 -37.25814 -36.94893 -35.64711 -34.65919 -32.71664 -32.54310 -31.90331 -28.28195 -27.46613 -27.24570 -24.12019 -23.74294 -23.14769 -22.68601 -21.17551 -20.55626 -19.66091 -18.51417 -18.07323 -17.51991 -17.14626 -16.96324 -16.69358 -16.56204 -16.17184 -15.95573 -15.50582 -15.34469 -14.87470 -14.75244 -14.68535 -14.45901 -14.04042 -13.79396 -13.60213 -13.41074 -13.30004 -13.18126 -13.09288 -12.96873 -12.87290 -12.86761 -12.70694 -12.57943 -12.04359 -11.98364 -11.83856 -11.80004 -11.55939 -11.40741 -11.15140 -11.10744 -10.55600 -10.25025 -10.01715 -9.70065 -8.96712 -6.60559 -0.55907 0.16268 0.64363 1.22398 1.36297 1.44057 2.03464 2.07176 2.41792 2.72529 3.02141 3.28787 3.38788 3.64514 3.72731 3.76609 3.97574 4.16977 4.32105 4.32762 4.36345 4.40219 4.43271 4.46519 4.53767 4.65737 4.71701 4.74819 4.80818 4.82747 4.83652 4.89028 5.01147 5.05235 5.08002 5.20320 5.22330 5.32675 5.37287 5.42591 5.49325 5.62115 5.75511 5.97936 6.13183 6.23471 6.31669 6.57416 6.68577 8.11433 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.004129 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.540955 B = 6779.392524 C = 8400.535796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 H 0.071 0.929 4 C 0.068 3.932 5 O -0.404 6.404 6 C 0.059 3.941 7 C -0.155 4.155 8 C -0.083 4.083 9 H 0.098 0.902 10 C 0.114 3.886 11 N -1.098 6.098 12 S 2.718 3.282 13 O -0.993 6.993 14 O -0.983 6.983 15 C -0.633 4.633 16 C -0.143 4.143 17 C -0.095 4.095 18 C -0.206 4.206 19 C 0.057 3.943 20 C -0.483 4.483 21 H 0.058 0.942 22 C 0.049 3.951 23 N -0.842 5.842 24 Si 0.960 3.040 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.246 1.246 28 C -0.122 4.122 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.429 0.571 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.108 0.892 44 H 0.296 0.704 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.541 -15.320 -10.713 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.140 4.140 3 H 0.089 0.911 4 C -0.009 4.009 5 O -0.324 6.324 6 C -0.017 4.017 7 C -0.193 4.193 8 C -0.103 4.103 9 H 0.116 0.884 10 C -0.012 4.012 11 N -0.862 5.862 12 S 2.810 3.190 13 O -0.983 6.983 14 O -0.973 6.973 15 C -0.721 4.721 16 C -0.164 4.164 17 C -0.114 4.114 18 C -0.226 4.226 19 C 0.053 3.947 20 C -0.512 4.512 21 H 0.076 0.924 22 C -0.166 4.166 23 N -0.467 5.467 24 Si 0.782 3.218 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.170 1.170 28 C -0.143 4.143 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.267 0.733 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.153 -14.642 -10.350 19.697 hybrid contribution -1.467 0.157 0.238 1.495 sum 6.685 -14.485 -10.112 18.888 Atomic orbital electron populations 1.21856 0.93882 1.02869 1.02435 1.21757 0.96718 1.00461 0.95025 0.91081 1.22713 0.80222 1.00375 0.97552 1.87910 1.21307 1.76890 1.46247 1.22709 0.99729 0.94847 0.84443 1.22312 0.95137 1.02370 0.99447 1.21416 0.96088 1.00434 0.92379 0.88369 1.21549 1.00367 0.95165 0.84098 1.55094 1.84401 1.24933 1.21748 1.00851 0.73335 0.72424 0.72408 1.93520 1.71930 1.46623 1.86207 1.93512 1.82375 1.60443 1.61017 1.30440 1.24636 1.03246 1.13759 1.20594 0.94149 0.99141 1.02476 1.21161 0.95659 0.95996 0.98596 1.21487 1.00074 0.97014 1.03985 1.17925 0.92890 0.92646 0.91208 1.19478 0.94359 0.94933 1.42437 0.92350 1.26848 0.98372 1.00183 0.91243 1.69713 1.14421 1.27117 1.35488 0.85569 0.78035 0.78847 0.79337 1.17967 1.19986 1.16963 1.20899 0.96428 0.94961 1.02030 0.93065 0.91514 0.91277 0.88073 0.91742 0.87959 0.91633 0.91994 0.89408 0.91167 0.91293 0.73326 0.84011 0.83963 0.87408 0.89303 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.93 71.98 0.64 -2.05 16 2 C -0.12 -2.12 2.42 -10.70 -0.03 -2.14 16 3 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 4 C 0.07 1.06 6.13 72.02 0.44 1.50 16 5 O -0.40 -7.76 10.77 -148.98 -1.60 -9.36 16 6 C 0.06 0.87 6.84 72.01 0.49 1.36 16 7 C -0.15 -2.57 5.27 30.68 0.16 -2.41 16 8 C -0.08 -1.45 1.79 -10.68 -0.02 -1.47 16 9 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 10 C 0.11 2.67 5.46 86.38 0.47 3.14 16 11 N -1.10 -25.71 5.58 -187.50 -1.05 -26.76 16 12 S 2.72 89.61 5.73 -56.49 -0.32 89.29 16 13 O -0.99 -39.00 16.73 -128.00 -2.14 -41.14 16 14 O -0.98 -34.57 17.27 -128.00 -2.21 -36.78 16 15 C -0.63 -24.60 5.94 22.22 0.13 -24.46 16 16 C -0.14 -5.25 9.53 22.46 0.21 -5.04 16 17 C -0.10 -3.60 10.02 22.22 0.22 -3.38 16 18 C -0.21 -9.16 7.18 22.73 0.16 -8.99 16 19 C 0.06 2.79 5.11 -21.29 -0.11 2.68 16 20 C -0.48 -26.24 9.57 23.46 0.22 -26.01 16 21 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 22 C 0.05 2.52 5.40 85.26 0.46 2.98 16 23 N -0.84 -44.50 13.93 21.83 0.30 -44.20 16 24 Si 0.96 39.52 24.52 68.60 1.68 41.21 16 25 H -0.25 -9.83 6.71 99.48 0.67 -9.16 16 26 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 27 H -0.25 -10.09 6.86 99.48 0.68 -9.41 16 28 C -0.12 -5.53 9.26 22.73 0.21 -5.32 16 29 H 0.05 1.10 6.43 -2.38 -0.02 1.09 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.25 7.65 -2.38 -0.02 1.23 16 38 H 0.07 1.75 6.30 -2.39 -0.02 1.74 16 39 H 0.07 1.81 7.75 -2.39 -0.02 1.79 16 40 H 0.43 7.22 8.40 -96.74 -0.81 6.41 16 41 H 0.14 4.37 7.60 -2.91 -0.02 4.35 16 42 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 43 H 0.11 4.69 4.73 -2.91 -0.01 4.68 16 44 H 0.30 13.96 8.30 -92.70 -0.77 13.19 16 45 H 0.11 5.11 7.60 -2.91 -0.02 5.09 16 Total: -1.00 -66.82 368.20 -1.53 -68.35 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.13 Total: 29.02 kcal Atomic # 6 Polarization: -73.30 SS G_CDS: 3.68 Total: -69.61 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -0.74 Total: -70.96 kcal Atomic # 8 Polarization: -81.33 SS G_CDS: -5.96 Total: -87.29 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.68 Total: 41.21 kcal Atomic # 16 Polarization: 89.61 SS G_CDS: -0.32 Total: 89.29 kcal Total: -66.82 -1.53 -68.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586774196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.852 kcal (2) G-P(sol) polarization free energy of solvation -66.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds