Wall clock time and date at job start Tue Mar 31 2020 23:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.56856 * 2 1 4 4 C 1.53093 * 109.52189 * 239.84763 * 2 1 3 5 5 O 1.42898 * 109.41106 * 297.69824 * 4 2 1 6 6 C 1.42904 * 114.10451 * 298.84553 * 5 4 2 7 7 C 1.53097 * 109.41263 * 61.15353 * 6 5 4 8 8 C 1.53174 * 109.16613 * 302.39601 * 7 6 5 9 9 H 1.08991 * 109.61793 * 297.07041 * 8 7 6 10 10 C 1.52996 * 109.54165 * 176.84301 * 8 7 6 11 11 N 1.46501 * 109.46867 * 65.44879 * 10 8 7 12 12 S 1.65599 * 119.99849 * 164.99770 * 11 10 8 13 13 O 1.42095 * 106.40518 * 311.45711 * 12 11 10 14 14 O 1.42107 * 106.40300 * 178.53936 * 12 11 10 15 15 C 1.76202 * 107.21913 * 65.00067 * 12 11 10 16 16 C 1.38652 * 119.87599 * 89.99988 * 15 12 11 17 17 C 1.38620 * 120.50120 * 180.02562 * 16 15 12 18 18 C 1.37638 * 120.24719 * 0.02562 * 17 16 15 19 19 C 1.40705 * 119.74293 * 0.02562 * 18 17 16 20 20 C 1.41398 * 120.24020 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99752 * 205.12900 * 20 19 18 22 22 C 1.39941 * 120.00410 * 25.13027 * 20 19 18 23 23 N 1.30826 * 119.99779 * 27.11701 * 22 20 19 24 24 Si 1.86796 * 120.00348 * 206.83750 * 22 20 19 25 25 H 1.48503 * 109.47234 * 60.00041 * 24 22 20 26 26 H 1.48500 * 109.47211 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46931 * 300.00010 * 24 22 20 28 28 C 1.37606 * 119.87386 * 270.32292 * 15 12 11 29 29 H 1.09000 * 109.46919 * 299.84106 * 1 2 3 30 30 H 1.09003 * 109.46994 * 59.83921 * 1 2 3 31 31 H 1.08996 * 109.46852 * 179.84198 * 1 2 3 32 32 H 1.08995 * 109.48784 * 57.68345 * 4 2 1 33 33 H 1.09000 * 109.47934 * 177.71149 * 4 2 1 34 34 H 1.08997 * 109.48757 * 181.14442 * 6 5 4 35 35 H 1.09008 * 109.47909 * 301.16551 * 6 5 4 36 36 H 1.08999 * 109.52032 * 182.48626 * 7 6 5 37 37 H 1.09007 * 109.51623 * 62.30530 * 7 6 5 38 38 H 1.09000 * 109.47408 * 305.44729 * 10 8 7 39 39 H 1.09004 * 109.47378 * 185.44376 * 10 8 7 40 40 H 0.96995 * 119.99986 * 344.99593 * 11 10 8 41 41 H 1.07994 * 119.75433 * 0.02562 * 16 15 12 42 42 H 1.07994 * 119.87809 * 180.02562 * 17 16 15 43 43 H 1.08002 * 120.13223 * 180.02562 * 18 17 16 44 44 H 0.97003 * 119.99936 * 3.90402 * 23 22 20 45 45 H 1.07995 * 120.12488 * 359.97199 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7248 -1.2477 5 8 1.6099 -2.0866 -1.2163 6 6 2.0971 -2.8277 -0.0958 7 6 1.5877 -2.1872 1.1981 8 6 2.0419 -0.7252 1.2483 9 1 3.1306 -0.6810 1.2749 10 6 1.4716 -0.0548 2.4997 11 7 2.0547 -0.6725 3.6933 12 16 1.9180 0.0765 5.1639 13 8 2.3034 1.4293 4.9627 14 8 2.5463 -0.7782 6.1095 15 6 0.2056 0.1034 5.5784 16 6 -0.3488 -0.9479 6.2925 17 6 -1.6945 -0.9403 6.6250 18 6 -2.4959 0.1133 6.2482 19 6 -1.9443 1.1851 5.5223 20 6 -2.7579 2.2731 5.1302 21 1 -2.4857 2.8689 4.2715 22 6 -3.9156 2.5779 5.8548 23 7 -3.9949 2.2657 7.1228 24 14 -5.3447 3.4377 5.0136 25 1 -5.8350 2.5992 3.8902 26 1 -6.4427 3.6451 5.9917 27 1 -4.8929 4.7518 4.4899 28 6 -0.5779 1.1645 5.1863 29 1 -0.3633 0.5114 0.8914 30 1 -0.3633 0.5163 -0.8886 31 1 -0.3633 -1.0276 -0.0028 32 1 1.6454 -0.2383 -2.1389 33 1 3.1309 -0.6890 -1.2678 34 1 1.7408 -3.8560 -0.1572 35 1 3.1871 -2.8197 -0.1009 36 1 1.9941 -2.7246 2.0550 37 1 0.4988 -2.2315 1.2223 38 1 0.3890 -0.1802 2.5177 39 1 1.7141 1.0078 2.4852 40 1 2.5208 -1.5201 3.6223 41 1 0.2725 -1.7789 6.5920 42 1 -2.1156 -1.7642 7.1819 43 1 -3.5440 0.1175 6.5086 44 1 -3.2309 1.8745 7.5746 45 1 -0.1451 1.9800 4.6260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586774197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:51 Heat of formation + Delta-G solvation = -127.400260 kcal Electronic energy + Delta-G solvation = -28047.821877 eV Core-core repulsion = 24155.847721 eV Total energy + Delta-G solvation = -3891.974156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.09944 -37.89374 -36.80455 -36.27850 -35.39062 -34.10834 -33.55924 -31.72418 -30.11823 -29.71649 -27.45582 -26.78631 -25.32999 -23.38881 -22.74929 -21.96859 -21.24207 -19.40265 -18.96406 -18.33423 -17.25228 -16.53926 -16.24973 -16.20038 -16.05280 -15.28187 -15.02198 -14.87775 -14.47535 -14.27316 -14.02789 -13.88407 -13.48188 -13.33218 -12.98476 -12.67900 -12.63518 -12.18899 -12.07232 -11.77833 -11.65403 -11.62241 -11.57388 -11.53308 -11.38888 -11.29433 -11.11273 -11.08779 -10.72731 -10.63490 -10.50037 -10.34029 -9.87107 -9.74185 -9.65688 -9.25692 -9.12086 -8.28081 -7.90765 -7.39597 -4.64583 0.92002 2.00639 2.55759 3.06715 3.12801 3.27014 3.46537 3.67850 3.89463 4.13452 4.34218 4.43339 4.45654 4.54656 4.75252 4.90064 4.96275 5.10904 5.14674 5.19446 5.30588 5.39092 5.43209 5.47509 5.56483 5.61407 5.67413 5.80470 5.87882 5.92238 6.01315 6.05141 6.07250 6.13855 6.33596 6.42488 6.52690 6.70811 6.98827 6.99558 7.11234 7.22934 7.44486 7.52045 7.60083 7.86923 7.98827 8.48165 8.64309 9.86458 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.003835 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.778385 B = 7299.676572 C = 8896.123850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 H 0.084 0.916 4 C 0.067 3.933 5 O -0.381 6.381 6 C 0.061 3.939 7 C -0.156 4.156 8 C -0.090 4.090 9 H 0.079 0.921 10 C 0.122 3.878 11 N -1.121 6.121 12 S 2.689 3.311 13 O -0.971 6.971 14 O -0.975 6.975 15 C -0.619 4.619 16 C -0.164 4.164 17 C -0.098 4.098 18 C -0.179 4.179 19 C 0.079 3.921 20 C -0.519 4.519 21 H 0.081 0.919 22 C 0.039 3.961 23 N -0.789 5.789 24 Si 1.066 2.934 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.274 1.274 28 C -0.127 4.127 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.411 0.589 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.299 0.701 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 -6.424 -13.336 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 H 0.102 0.898 4 C -0.010 4.010 5 O -0.299 6.299 6 C -0.015 4.015 7 C -0.193 4.193 8 C -0.110 4.110 9 H 0.097 0.903 10 C -0.004 4.004 11 N -0.879 5.879 12 S 2.785 3.215 13 O -0.961 6.961 14 O -0.966 6.966 15 C -0.711 4.711 16 C -0.185 4.185 17 C -0.118 4.118 18 C -0.198 4.198 19 C 0.075 3.925 20 C -0.546 4.546 21 H 0.099 0.901 22 C -0.184 4.184 23 N -0.412 5.412 24 Si 0.889 3.111 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.199 1.199 28 C -0.149 4.149 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.245 0.755 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.019 -5.417 -12.661 15.457 hybrid contribution 1.173 -0.994 0.052 1.538 sum 8.193 -6.411 -12.608 16.346 Atomic orbital electron populations 1.21896 0.93887 1.02820 1.02230 1.21774 0.97725 1.00048 0.94598 0.89762 1.22607 0.98136 0.82381 0.97891 1.87927 1.74183 1.22470 1.45351 1.22574 0.97824 0.95561 0.85584 1.22323 1.03073 0.95632 0.98313 1.21389 1.00577 0.95099 0.93898 0.90298 1.21401 0.98256 0.97381 0.83377 1.55575 1.71648 1.36868 1.23849 1.01665 0.74918 0.73073 0.71861 1.93531 1.82172 1.35099 1.85254 1.93526 1.75605 1.67885 1.59543 1.29821 1.22807 1.04123 1.14320 1.20001 0.95653 0.98068 1.04827 1.20726 0.93857 0.97724 0.99464 1.21420 0.98906 0.94454 1.05046 1.17720 0.91089 0.92635 0.91037 1.20593 1.07418 1.12632 1.13993 0.90098 1.27099 1.01158 0.95510 0.94620 1.70501 1.35249 1.26088 1.09342 0.83617 0.74710 0.76684 0.76102 1.19836 1.19730 1.19904 1.20720 0.93571 0.96358 1.04205 0.91748 0.92615 0.91698 0.88801 0.93314 0.88937 0.93359 0.90718 0.90044 0.90767 0.90152 0.75498 0.87473 0.88244 0.87141 0.88735 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.36 37.16 0.31 -1.24 16 2 C -0.12 -1.12 2.79 -90.48 -0.25 -1.37 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.07 0.57 6.25 37.21 0.23 0.80 16 5 O -0.38 -3.92 10.18 -35.23 -0.36 -4.28 16 6 C 0.06 0.53 6.84 37.21 0.25 0.78 16 7 C -0.16 -1.44 4.89 -26.59 -0.13 -1.57 16 8 C -0.09 -0.88 2.16 -90.44 -0.20 -1.07 16 9 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 10 C 0.12 1.53 5.02 -4.04 -0.02 1.51 16 11 N -1.12 -15.11 5.89 -10.61 -0.06 -15.17 16 12 S 2.69 49.04 5.73 -107.50 -0.62 48.43 16 13 O -0.97 -20.09 16.74 -57.17 -0.96 -21.05 16 14 O -0.98 -19.54 17.27 -57.17 -0.99 -20.53 16 15 C -0.62 -13.17 5.94 -39.66 -0.24 -13.40 16 16 C -0.16 -3.51 9.53 -39.29 -0.37 -3.88 16 17 C -0.10 -2.16 10.02 -39.66 -0.40 -2.55 16 18 C -0.18 -4.31 7.97 -38.87 -0.31 -4.62 16 19 C 0.08 1.99 5.30 -106.82 -0.57 1.42 16 20 C -0.52 -13.07 8.98 -37.74 -0.34 -13.41 16 21 H 0.08 1.96 7.97 -52.49 -0.42 1.54 16 22 C 0.04 0.94 4.90 -17.34 -0.08 0.85 16 23 N -0.79 -20.18 12.38 55.55 0.69 -19.49 16 24 Si 1.07 20.50 30.01 -169.99 -5.10 15.40 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 28 C -0.13 -2.97 9.26 -38.87 -0.36 -3.33 16 29 H 0.06 0.73 6.50 -51.93 -0.34 0.39 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.71 6.14 -51.93 -0.32 0.39 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.07 0.62 7.02 -51.93 -0.36 0.26 16 37 H 0.08 0.84 6.63 -51.93 -0.34 0.50 16 38 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 39 H 0.08 1.05 7.75 -51.93 -0.40 0.64 16 40 H 0.41 4.48 7.48 -34.47 -0.26 4.22 16 41 H 0.11 2.08 7.60 -52.49 -0.40 1.68 16 42 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.11 2.72 6.53 -52.49 -0.34 2.38 16 44 H 0.30 7.87 6.72 -40.82 -0.27 7.59 16 45 H 0.11 2.51 7.61 -52.49 -0.40 2.11 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -30.68 367.42 -10.71 -41.39 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.38 Total: 10.86 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: -2.47 Total: -41.09 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.63 Total: -34.66 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -2.30 Total: -45.86 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.10 Total: 15.40 kcal Atomic # 16 Polarization: 49.04 SS G_CDS: -0.62 Total: 48.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.68 -10.71 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586774197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.015 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds