Wall clock time and date at job start Tue Mar 31 2020 23:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.56856 * 2 1 4 4 C 1.53093 * 109.52189 * 239.84763 * 2 1 3 5 5 O 1.42898 * 109.41106 * 297.69824 * 4 2 1 6 6 C 1.42904 * 114.10451 * 298.84553 * 5 4 2 7 7 C 1.53097 * 109.41263 * 61.15353 * 6 5 4 8 8 C 1.53174 * 109.16613 * 302.39601 * 7 6 5 9 9 H 1.08991 * 109.61793 * 297.07041 * 8 7 6 10 10 C 1.52996 * 109.54165 * 176.84301 * 8 7 6 11 11 N 1.46501 * 109.46867 * 65.44879 * 10 8 7 12 12 S 1.65599 * 119.99849 * 164.99770 * 11 10 8 13 13 O 1.42095 * 106.40518 * 311.45711 * 12 11 10 14 14 O 1.42107 * 106.40300 * 178.53936 * 12 11 10 15 15 C 1.76202 * 107.21913 * 65.00067 * 12 11 10 16 16 C 1.38652 * 119.87599 * 89.99988 * 15 12 11 17 17 C 1.38620 * 120.50120 * 180.02562 * 16 15 12 18 18 C 1.37638 * 120.24719 * 0.02562 * 17 16 15 19 19 C 1.40705 * 119.74293 * 0.02562 * 18 17 16 20 20 C 1.41398 * 120.24020 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99752 * 205.12900 * 20 19 18 22 22 C 1.39941 * 120.00410 * 25.13027 * 20 19 18 23 23 N 1.30826 * 119.99779 * 27.11701 * 22 20 19 24 24 Si 1.86796 * 120.00348 * 206.83750 * 22 20 19 25 25 H 1.48503 * 109.47234 * 60.00041 * 24 22 20 26 26 H 1.48500 * 109.47211 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46931 * 300.00010 * 24 22 20 28 28 C 1.37606 * 119.87386 * 270.32292 * 15 12 11 29 29 H 1.09000 * 109.46919 * 299.84106 * 1 2 3 30 30 H 1.09003 * 109.46994 * 59.83921 * 1 2 3 31 31 H 1.08996 * 109.46852 * 179.84198 * 1 2 3 32 32 H 1.08995 * 109.48784 * 57.68345 * 4 2 1 33 33 H 1.09000 * 109.47934 * 177.71149 * 4 2 1 34 34 H 1.08997 * 109.48757 * 181.14442 * 6 5 4 35 35 H 1.09008 * 109.47909 * 301.16551 * 6 5 4 36 36 H 1.08999 * 109.52032 * 182.48626 * 7 6 5 37 37 H 1.09007 * 109.51623 * 62.30530 * 7 6 5 38 38 H 1.09000 * 109.47408 * 305.44729 * 10 8 7 39 39 H 1.09004 * 109.47378 * 185.44376 * 10 8 7 40 40 H 0.96995 * 119.99986 * 344.99593 * 11 10 8 41 41 H 1.07994 * 119.75433 * 0.02562 * 16 15 12 42 42 H 1.07994 * 119.87809 * 180.02562 * 17 16 15 43 43 H 1.08002 * 120.13223 * 180.02562 * 18 17 16 44 44 H 0.97003 * 119.99936 * 3.90402 * 23 22 20 45 45 H 1.07995 * 120.12488 * 359.97199 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7248 -1.2477 5 8 1.6099 -2.0866 -1.2163 6 6 2.0971 -2.8277 -0.0958 7 6 1.5877 -2.1872 1.1981 8 6 2.0419 -0.7252 1.2483 9 1 3.1306 -0.6810 1.2749 10 6 1.4716 -0.0548 2.4997 11 7 2.0547 -0.6725 3.6933 12 16 1.9180 0.0765 5.1639 13 8 2.3034 1.4293 4.9627 14 8 2.5463 -0.7782 6.1095 15 6 0.2056 0.1034 5.5784 16 6 -0.3488 -0.9479 6.2925 17 6 -1.6945 -0.9403 6.6250 18 6 -2.4959 0.1133 6.2482 19 6 -1.9443 1.1851 5.5223 20 6 -2.7579 2.2731 5.1302 21 1 -2.4857 2.8689 4.2715 22 6 -3.9156 2.5779 5.8548 23 7 -3.9949 2.2657 7.1228 24 14 -5.3447 3.4377 5.0136 25 1 -5.8350 2.5992 3.8902 26 1 -6.4427 3.6451 5.9917 27 1 -4.8929 4.7518 4.4899 28 6 -0.5779 1.1645 5.1863 29 1 -0.3633 0.5114 0.8914 30 1 -0.3633 0.5163 -0.8886 31 1 -0.3633 -1.0276 -0.0028 32 1 1.6454 -0.2383 -2.1389 33 1 3.1309 -0.6890 -1.2678 34 1 1.7408 -3.8560 -0.1572 35 1 3.1871 -2.8197 -0.1009 36 1 1.9941 -2.7246 2.0550 37 1 0.4988 -2.2315 1.2223 38 1 0.3890 -0.1802 2.5177 39 1 1.7141 1.0078 2.4852 40 1 2.5208 -1.5201 3.6223 41 1 0.2725 -1.7789 6.5920 42 1 -2.1156 -1.7642 7.1819 43 1 -3.5440 0.1175 6.5086 44 1 -3.2309 1.8745 7.5746 45 1 -0.1451 1.9800 4.6260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586774197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:50 Heat of formation + Delta-G solvation = -147.511888 kcal Electronic energy + Delta-G solvation = -28048.693983 eV Core-core repulsion = 24155.847721 eV Total energy + Delta-G solvation = -3892.846261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84633 -39.70040 -38.35781 -37.24675 -36.98620 -35.93111 -34.50183 -32.48071 -31.92227 -31.52863 -28.35613 -27.58484 -27.19006 -24.11698 -23.73278 -23.62313 -23.02815 -20.84056 -20.04819 -19.79276 -18.60722 -17.98018 -17.52372 -17.18607 -16.77605 -16.76495 -16.39441 -15.98437 -15.79601 -15.71386 -15.40478 -15.15181 -14.87503 -14.45878 -14.28809 -14.00651 -13.73181 -13.63912 -13.38338 -13.26249 -13.17098 -13.12045 -13.04254 -12.75763 -12.67177 -12.42894 -12.41136 -12.11704 -11.99045 -11.93266 -11.55652 -11.49758 -11.37802 -11.04547 -10.95758 -10.52877 -10.30811 -10.08029 -9.76630 -9.29610 -6.57660 -0.58521 0.22331 0.74732 1.49282 1.57699 1.78128 2.05051 2.29038 2.47342 2.71003 3.03860 3.30555 3.36963 3.64520 3.72043 3.78784 4.03291 4.15508 4.25033 4.29158 4.34097 4.37814 4.45629 4.55673 4.61271 4.67958 4.72191 4.74451 4.81590 4.83357 4.86066 4.92851 5.01234 5.04182 5.17620 5.22168 5.27145 5.28503 5.41142 5.51884 5.56092 5.67900 5.70410 6.00091 6.08239 6.14077 6.34002 6.61295 6.78080 7.93760 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.003835 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.778385 B = 7299.676572 C = 8896.123850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 H 0.093 0.907 4 C 0.067 3.933 5 O -0.400 6.400 6 C 0.060 3.940 7 C -0.156 4.156 8 C -0.084 4.084 9 H 0.096 0.904 10 C 0.116 3.884 11 N -1.099 6.099 12 S 2.720 3.280 13 O -0.993 6.993 14 O -0.987 6.987 15 C -0.627 4.627 16 C -0.161 4.161 17 C -0.102 4.102 18 C -0.195 4.195 19 C 0.054 3.946 20 C -0.553 4.553 21 H 0.079 0.921 22 C 0.006 3.994 23 N -0.812 5.812 24 Si 1.116 2.884 25 H -0.260 1.260 26 H -0.272 1.272 27 H -0.257 1.257 28 C -0.142 4.142 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.427 0.573 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.098 0.902 44 H 0.283 0.717 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -7.471 -14.751 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.140 4.140 3 H 0.111 0.889 4 C -0.010 4.010 5 O -0.319 6.319 6 C -0.016 4.016 7 C -0.194 4.194 8 C -0.104 4.104 9 H 0.114 0.886 10 C -0.009 4.009 11 N -0.863 5.863 12 S 2.812 3.188 13 O -0.983 6.983 14 O -0.978 6.978 15 C -0.716 4.716 16 C -0.182 4.182 17 C -0.121 4.121 18 C -0.215 4.215 19 C 0.050 3.950 20 C -0.581 4.581 21 H 0.097 0.903 22 C -0.211 4.211 23 N -0.435 5.435 24 Si 0.932 3.068 25 H -0.185 1.185 26 H -0.196 1.196 27 H -0.182 1.182 28 C -0.163 4.163 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.265 0.735 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.327 -6.487 -14.059 17.581 hybrid contribution 0.920 -0.793 0.467 1.301 sum 9.248 -7.280 -13.592 17.979 Atomic orbital electron populations 1.21874 0.95093 1.02073 1.01743 1.21790 0.96662 1.00712 0.94850 0.88895 1.22696 0.99065 0.81622 0.97614 1.87908 1.74742 1.23264 1.46006 1.22670 0.98709 0.95688 0.84540 1.22330 1.02202 0.95419 0.99434 1.21383 1.01363 0.95221 0.92426 0.88603 1.21552 0.97830 0.97527 0.84037 1.55129 1.71290 1.37512 1.22359 1.00771 0.73112 0.72514 0.72381 1.93505 1.81874 1.36991 1.85898 1.93503 1.75159 1.68005 1.61086 1.30361 1.24730 1.03179 1.13282 1.20431 0.95723 0.98547 1.03474 1.21080 0.94154 0.97807 0.99035 1.21438 0.98778 0.95319 1.05921 1.18057 0.92110 0.93163 0.91671 1.20807 1.08938 1.13590 1.14744 0.90262 1.28473 1.03211 0.95085 0.94306 1.70619 1.34603 1.28095 1.10164 0.83025 0.71751 0.76572 0.75446 1.18479 1.19622 1.18153 1.20793 0.93318 0.97322 1.04874 0.93432 0.91898 0.92567 0.87924 0.91753 0.88130 0.91798 0.89610 0.91618 0.91920 0.90643 0.73496 0.84854 0.85306 0.88382 0.90487 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.36 71.98 0.60 -2.43 16 2 C -0.12 -2.01 2.79 -10.70 -0.03 -2.04 16 3 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 4 C 0.07 0.98 6.25 72.01 0.45 1.43 16 5 O -0.40 -7.40 10.18 -148.98 -1.52 -8.91 16 6 C 0.06 0.88 6.84 72.01 0.49 1.37 16 7 C -0.16 -2.56 4.89 30.68 0.15 -2.41 16 8 C -0.08 -1.46 2.16 -10.68 -0.02 -1.49 16 9 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 10 C 0.12 2.78 5.02 86.38 0.43 3.21 16 11 N -1.10 -27.43 5.89 -187.49 -1.10 -28.53 16 12 S 2.72 95.39 5.73 -56.49 -0.32 95.07 16 13 O -0.99 -40.28 16.74 -128.00 -2.14 -42.42 16 14 O -0.99 -37.38 17.27 -128.00 -2.21 -39.59 16 15 C -0.63 -26.38 5.94 22.22 0.13 -26.25 16 16 C -0.16 -6.66 9.53 22.46 0.21 -6.45 16 17 C -0.10 -4.41 10.02 22.22 0.22 -4.18 16 18 C -0.19 -9.65 7.97 22.73 0.18 -9.47 16 19 C 0.05 2.78 5.30 -21.29 -0.11 2.66 16 20 C -0.55 -28.88 8.98 23.46 0.21 -28.67 16 21 H 0.08 4.00 7.97 -2.91 -0.02 3.98 16 22 C 0.01 0.30 4.90 85.26 0.42 0.72 16 23 N -0.81 -42.93 12.38 21.83 0.27 -42.66 16 24 Si 1.12 41.60 30.01 68.60 2.06 43.66 16 25 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 26 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 27 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 28 C -0.14 -6.77 9.26 22.73 0.21 -6.56 16 29 H 0.05 1.10 6.50 -2.39 -0.02 1.08 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.22 6.14 -2.39 -0.01 1.20 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.09 1.19 7.02 -2.39 -0.02 1.17 16 37 H 0.07 1.30 6.63 -2.38 -0.02 1.28 16 38 H 0.06 1.67 6.68 -2.39 -0.02 1.65 16 39 H 0.08 1.90 7.75 -2.39 -0.02 1.88 16 40 H 0.43 8.04 7.48 -96.75 -0.72 7.32 16 41 H 0.13 4.79 7.60 -2.91 -0.02 4.77 16 42 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.10 5.03 6.53 -2.91 -0.02 5.01 16 44 H 0.28 15.59 6.72 -92.71 -0.62 14.97 16 45 H 0.11 5.17 7.61 -2.91 -0.02 5.15 16 Total: -1.00 -66.73 367.42 -0.99 -67.71 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.43 Total: 36.24 kcal Atomic # 6 Polarization: -84.11 SS G_CDS: 3.55 Total: -80.56 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -0.83 Total: -71.20 kcal Atomic # 8 Polarization: -85.06 SS G_CDS: -5.87 Total: -90.93 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.06 Total: 43.66 kcal Atomic # 16 Polarization: 95.39 SS G_CDS: -0.32 Total: 95.07 kcal Total: -66.73 -0.99 -67.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586774197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.799 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds