Wall clock time and date at job start Tue Mar 31 2020 23:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99623 * 2 1 4 4 C 1.52998 * 109.47262 * 302.60084 * 3 2 1 5 5 C 1.53006 * 109.46754 * 62.59889 * 3 2 1 6 6 N 1.46496 * 109.47236 * 65.00015 * 5 3 2 7 7 S 1.65594 * 120.00252 * 165.00031 * 6 5 3 8 8 O 1.42104 * 106.40121 * 311.45794 * 7 6 5 9 9 O 1.42102 * 106.40553 * 178.53996 * 7 6 5 10 10 C 1.76196 * 107.21850 * 64.99500 * 7 6 5 11 11 C 1.38658 * 119.88044 * 269.72570 * 10 7 6 12 12 C 1.38608 * 120.50269 * 179.72264 * 11 10 7 13 13 C 1.37640 * 120.24874 * 0.55149 * 12 11 10 14 14 C 1.40695 * 119.74254 * 359.73236 * 13 12 11 15 15 C 1.41398 * 120.24363 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00479 * 204.49389 * 15 14 13 17 17 C 1.39952 * 120.00126 * 24.49234 * 15 14 13 18 18 N 1.30830 * 119.99535 * 16.04947 * 17 15 14 19 19 Si 1.86791 * 120.00149 * 196.04952 * 17 15 14 20 20 H 1.48502 * 109.47051 * 60.00387 * 19 17 15 21 21 H 1.48500 * 109.47201 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47396 * 300.00069 * 19 17 15 23 23 C 1.37603 * 119.87216 * 90.00695 * 10 7 6 24 24 C 1.52996 * 109.47096 * 182.59851 * 3 2 1 25 25 C 1.52995 * 117.50016 * 129.10711 * 24 3 2 26 26 C 1.52997 * 117.49942 * 60.44433 * 24 3 2 27 27 H 1.08999 * 109.47156 * 301.03385 * 1 2 3 28 28 H 1.08999 * 109.47502 * 61.04635 * 1 2 3 29 29 H 1.09010 * 109.46898 * 181.03738 * 1 2 3 30 30 H 1.09002 * 109.47076 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47080 * 299.99556 * 4 3 2 32 32 H 1.08999 * 109.47491 * 59.99667 * 4 3 2 33 33 H 1.08998 * 109.47125 * 304.99853 * 5 3 2 34 34 H 1.08997 * 109.46823 * 185.00120 * 5 3 2 35 35 H 0.97001 * 119.99835 * 344.99642 * 6 5 3 36 36 H 1.08000 * 119.74654 * 0.02562 * 11 10 7 37 37 H 1.07999 * 119.87729 * 180.26526 * 12 11 10 38 38 H 1.07995 * 120.12734 * 179.70130 * 13 12 11 39 39 H 0.96998 * 119.99631 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.12794 * 359.97312 * 23 10 7 41 41 H 1.09004 * 115.54753 * 274.77401 * 24 3 2 42 42 H 1.09005 * 117.49926 * 359.97438 * 25 24 3 43 43 H 1.08998 * 117.50334 * 145.01869 * 25 24 3 44 44 H 1.09008 * 117.49921 * 214.98087 * 26 24 3 45 45 H 1.08997 * 117.50065 * 0.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5076 2.0875 -1.2152 5 6 1.6110 2.0414 1.2807 6 7 2.1933 1.3579 2.4383 7 16 2.2478 2.1188 3.9081 8 8 2.7808 3.4144 3.6697 9 8 2.8294 1.1945 4.8172 10 6 0.5832 2.3549 4.4352 11 6 -0.0908 3.5178 4.0947 12 6 -1.4024 3.7145 4.4977 13 6 -2.0467 2.7598 5.2513 14 6 -1.3707 1.5785 5.6077 15 6 -2.0227 0.5905 6.3812 16 1 -1.4428 -0.0969 6.9791 17 6 -3.4194 0.5035 6.3719 18 7 -4.1060 1.1036 5.4338 19 14 -4.3034 -0.4695 7.6989 20 1 -3.9889 0.1095 9.0297 21 1 -5.7687 -0.4064 7.4660 22 1 -3.8555 -1.8848 7.6565 23 6 -0.0411 1.3871 5.1881 24 6 3.5340 1.1854 -0.0654 25 6 4.2618 2.0026 -1.1346 26 6 4.1357 0.4845 -1.2850 27 1 -0.3633 0.5298 0.8806 28 1 -0.3634 0.4975 -0.8992 29 1 -0.3633 -1.0276 0.0186 30 1 1.9512 3.0832 -1.2154 31 1 1.7919 1.5633 -2.1276 32 1 0.4219 2.1731 -1.1687 33 1 0.5249 2.0491 1.3718 34 1 1.9796 3.0664 1.2407 35 1 2.5469 0.4596 2.3438 36 1 0.4083 4.2740 3.5070 37 1 -1.9192 4.6222 4.2232 38 1 -3.0671 2.9172 5.5683 39 1 -5.0741 1.0436 5.4275 40 1 0.4871 0.4839 5.4557 41 1 4.0363 1.0489 0.8923 42 1 3.6550 2.6255 -1.7918 43 1 5.2431 2.4033 -0.8806 44 1 5.0342 -0.1130 -1.1298 45 1 3.4460 0.1093 -2.0410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589703574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:07 Heat of formation + Delta-G solvation = -75.671923 kcal Electronic energy + Delta-G solvation = -28175.600235 eV Core-core repulsion = 24285.869188 eV Total energy + Delta-G solvation = -3889.731047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.89096 -37.65622 -36.64506 -36.47439 -35.28880 -34.54017 -33.86104 -30.75691 -30.09217 -29.79561 -27.27047 -25.90393 -25.49803 -23.15939 -22.45036 -21.88209 -21.00541 -19.42415 -19.05516 -17.97218 -17.22073 -16.82079 -16.49593 -15.92685 -15.34856 -15.29583 -15.18461 -14.81058 -14.72062 -14.17825 -13.67174 -13.50193 -13.34452 -13.21956 -12.75194 -12.62231 -12.57973 -12.17711 -11.92057 -11.63280 -11.60785 -11.50743 -11.40667 -11.38707 -11.36109 -11.26218 -11.01148 -10.95676 -10.89106 -10.64108 -10.48043 -10.15234 -9.81468 -9.70226 -9.57564 -9.37645 -9.08280 -8.05385 -7.72097 -6.93333 -4.55937 1.04696 2.18430 2.62085 2.98191 3.00815 3.06972 3.31842 3.61657 3.81437 4.04197 4.24472 4.40122 4.48381 4.52665 4.74430 4.90727 4.96507 5.07794 5.20055 5.31300 5.37218 5.41243 5.42566 5.47228 5.57229 5.57921 5.69075 5.83179 5.90171 5.93780 5.99472 6.02556 6.08215 6.15649 6.17826 6.64271 6.75160 6.83549 7.02004 7.14997 7.19612 7.29489 7.37028 7.71109 7.79616 7.92940 8.38777 8.65353 8.70040 10.01296 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.003450 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.711412 B = 8113.074194 C = 8794.891988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.370 6.370 3 C 0.141 3.859 4 C -0.183 4.183 5 C 0.099 3.901 6 N -1.113 6.113 7 S 2.689 3.311 8 O -0.976 6.976 9 O -0.973 6.973 10 C -0.632 4.632 11 C -0.150 4.150 12 C -0.121 4.121 13 C -0.118 4.118 14 C 0.091 3.909 15 C -0.459 4.459 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.796 5.796 19 Si 0.913 3.087 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.122 4.122 24 C -0.143 4.143 25 C -0.178 4.178 26 C -0.166 4.166 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.417 0.583 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.283 0.717 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.866 0.322 -13.086 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.289 6.289 3 C 0.100 3.900 4 C -0.241 4.241 5 C -0.028 4.028 6 N -0.872 5.872 7 S 2.785 3.215 8 O -0.966 6.966 9 O -0.963 6.963 10 C -0.724 4.724 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C 0.088 3.912 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.143 4.143 18 N -0.422 5.422 19 Si 0.737 3.263 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.144 4.144 24 C -0.161 4.161 25 C -0.215 4.215 26 C -0.203 4.203 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.252 0.748 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.145 0.855 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.447 0.609 -12.728 14.759 hybrid contribution -1.523 -0.650 0.502 1.730 sum 5.923 -0.040 -12.226 13.585 Atomic orbital electron populations 1.22890 0.81046 1.03089 1.00672 1.87975 1.19715 1.26389 1.94858 1.21024 0.91757 0.83898 0.93283 1.22521 1.02266 1.01176 0.98123 1.21793 0.98859 0.96785 0.85358 1.55432 1.77129 1.29757 1.24916 1.01648 0.75018 0.72962 0.71903 1.93507 1.78010 1.40010 1.85036 1.93539 1.77078 1.64127 1.61564 1.29756 1.22882 1.04158 1.15636 1.20080 0.95377 0.96211 1.05473 1.20813 0.94463 0.98584 1.00224 1.21684 1.00619 0.92489 0.99020 1.17685 0.90741 0.92175 0.90640 1.19610 0.91308 1.14100 1.23857 0.89966 1.25931 0.97984 0.95017 0.95387 1.69760 1.08912 1.35523 1.27983 0.86277 0.77953 0.80570 0.81488 1.18690 1.20244 1.18807 1.20794 0.96712 0.97051 0.99810 1.22114 0.92181 1.06383 0.95458 1.23186 1.01899 0.94517 1.01865 1.22862 1.02650 0.94577 1.00209 0.92756 0.93895 0.89556 0.90607 0.91210 0.91466 0.90795 0.89410 0.74803 0.87666 0.88429 0.85540 0.90566 0.87055 0.86834 0.88019 0.88529 0.88846 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.20 101.05 1.03 1.25 16 2 O -0.37 -4.66 10.06 -35.23 -0.35 -5.02 16 3 C 0.14 1.61 0.61 -90.62 -0.05 1.55 16 4 C -0.18 -1.68 6.77 37.16 0.25 -1.42 16 5 C 0.10 1.32 5.01 -4.04 -0.02 1.30 16 6 N -1.11 -16.65 5.17 -10.61 -0.05 -16.71 16 7 S 2.69 50.60 5.74 -107.50 -0.62 49.98 16 8 O -0.98 -19.70 16.73 -57.17 -0.96 -20.65 16 9 O -0.97 -20.67 17.27 -57.17 -0.99 -21.66 16 10 C -0.63 -13.71 5.94 -39.66 -0.24 -13.94 16 11 C -0.15 -3.20 9.53 -39.29 -0.37 -3.58 16 12 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 13 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 14 C 0.09 2.33 5.58 -106.82 -0.60 1.74 16 15 C -0.46 -11.73 9.06 -37.74 -0.34 -12.07 16 16 H 0.08 2.03 7.90 -52.48 -0.41 1.61 16 17 C 0.07 1.78 5.18 -17.34 -0.09 1.69 16 18 N -0.80 -19.38 10.85 55.55 0.60 -18.78 16 19 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 23 C -0.12 -2.93 9.26 -38.87 -0.36 -3.29 16 24 C -0.14 -1.55 5.12 -90.63 -0.46 -2.01 16 25 C -0.18 -1.57 9.58 -26.70 -0.26 -1.82 16 26 C -0.17 -1.53 9.81 -26.69 -0.26 -1.79 16 27 H 0.05 0.70 6.32 -51.93 -0.33 0.38 16 28 H 0.04 0.42 6.43 -51.93 -0.33 0.08 16 29 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 30 H 0.08 0.62 6.95 -51.93 -0.36 0.25 16 31 H 0.07 0.59 7.06 -51.93 -0.37 0.22 16 32 H 0.07 0.59 6.53 -51.93 -0.34 0.26 16 33 H 0.07 1.01 6.33 -51.93 -0.33 0.68 16 34 H 0.09 1.13 7.75 -51.93 -0.40 0.73 16 35 H 0.42 5.71 7.91 -34.46 -0.27 5.43 16 36 H 0.11 2.01 7.59 -52.49 -0.40 1.61 16 37 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.13 3.17 6.09 -52.49 -0.32 2.85 16 39 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 40 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 41 H 0.11 1.31 7.03 -51.93 -0.37 0.94 16 42 H 0.10 0.79 5.85 -51.93 -0.30 0.49 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.10 0.88 7.58 -51.93 -0.39 0.48 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -30.13 372.80 -10.44 -40.57 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -6.15 Total: 12.43 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: -2.51 Total: -38.72 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.55 Total: -35.48 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -2.30 Total: -47.33 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.62 Total: 49.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.13 -10.44 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.105 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds