Wall clock time and date at job start Tue Mar 31 2020 23:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99623 * 2 1 4 4 C 1.52998 * 109.47262 * 302.60084 * 3 2 1 5 5 C 1.53006 * 109.46754 * 62.59889 * 3 2 1 6 6 N 1.46496 * 109.47236 * 65.00015 * 5 3 2 7 7 S 1.65594 * 120.00252 * 165.00031 * 6 5 3 8 8 O 1.42104 * 106.40121 * 311.45794 * 7 6 5 9 9 O 1.42102 * 106.40553 * 178.53996 * 7 6 5 10 10 C 1.76196 * 107.21850 * 64.99500 * 7 6 5 11 11 C 1.38658 * 119.88044 * 269.72570 * 10 7 6 12 12 C 1.38608 * 120.50269 * 179.72264 * 11 10 7 13 13 C 1.37640 * 120.24874 * 0.55149 * 12 11 10 14 14 C 1.40695 * 119.74254 * 359.73236 * 13 12 11 15 15 C 1.41398 * 120.24363 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00479 * 204.49389 * 15 14 13 17 17 C 1.39952 * 120.00126 * 24.49234 * 15 14 13 18 18 N 1.30830 * 119.99535 * 16.04947 * 17 15 14 19 19 Si 1.86791 * 120.00149 * 196.04952 * 17 15 14 20 20 H 1.48502 * 109.47051 * 60.00387 * 19 17 15 21 21 H 1.48500 * 109.47201 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47396 * 300.00069 * 19 17 15 23 23 C 1.37603 * 119.87216 * 90.00695 * 10 7 6 24 24 C 1.52996 * 109.47096 * 182.59851 * 3 2 1 25 25 C 1.52995 * 117.50016 * 129.10711 * 24 3 2 26 26 C 1.52997 * 117.49942 * 60.44433 * 24 3 2 27 27 H 1.08999 * 109.47156 * 301.03385 * 1 2 3 28 28 H 1.08999 * 109.47502 * 61.04635 * 1 2 3 29 29 H 1.09010 * 109.46898 * 181.03738 * 1 2 3 30 30 H 1.09002 * 109.47076 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47080 * 299.99556 * 4 3 2 32 32 H 1.08999 * 109.47491 * 59.99667 * 4 3 2 33 33 H 1.08998 * 109.47125 * 304.99853 * 5 3 2 34 34 H 1.08997 * 109.46823 * 185.00120 * 5 3 2 35 35 H 0.97001 * 119.99835 * 344.99642 * 6 5 3 36 36 H 1.08000 * 119.74654 * 0.02562 * 11 10 7 37 37 H 1.07999 * 119.87729 * 180.26526 * 12 11 10 38 38 H 1.07995 * 120.12734 * 179.70130 * 13 12 11 39 39 H 0.96998 * 119.99631 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.12794 * 359.97312 * 23 10 7 41 41 H 1.09004 * 115.54753 * 274.77401 * 24 3 2 42 42 H 1.09005 * 117.49926 * 359.97438 * 25 24 3 43 43 H 1.08998 * 117.50334 * 145.01869 * 25 24 3 44 44 H 1.09008 * 117.49921 * 214.98087 * 26 24 3 45 45 H 1.08997 * 117.50065 * 0.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5076 2.0875 -1.2152 5 6 1.6110 2.0414 1.2807 6 7 2.1933 1.3579 2.4383 7 16 2.2478 2.1188 3.9081 8 8 2.7808 3.4144 3.6697 9 8 2.8294 1.1945 4.8172 10 6 0.5832 2.3549 4.4352 11 6 -0.0908 3.5178 4.0947 12 6 -1.4024 3.7145 4.4977 13 6 -2.0467 2.7598 5.2513 14 6 -1.3707 1.5785 5.6077 15 6 -2.0227 0.5905 6.3812 16 1 -1.4428 -0.0969 6.9791 17 6 -3.4194 0.5035 6.3719 18 7 -4.1060 1.1036 5.4338 19 14 -4.3034 -0.4695 7.6989 20 1 -3.9889 0.1095 9.0297 21 1 -5.7687 -0.4064 7.4660 22 1 -3.8555 -1.8848 7.6565 23 6 -0.0411 1.3871 5.1881 24 6 3.5340 1.1854 -0.0654 25 6 4.2618 2.0026 -1.1346 26 6 4.1357 0.4845 -1.2850 27 1 -0.3633 0.5298 0.8806 28 1 -0.3634 0.4975 -0.8992 29 1 -0.3633 -1.0276 0.0186 30 1 1.9512 3.0832 -1.2154 31 1 1.7919 1.5633 -2.1276 32 1 0.4219 2.1731 -1.1687 33 1 0.5249 2.0491 1.3718 34 1 1.9796 3.0664 1.2407 35 1 2.5469 0.4596 2.3438 36 1 0.4083 4.2740 3.5070 37 1 -1.9192 4.6222 4.2232 38 1 -3.0671 2.9172 5.5683 39 1 -5.0741 1.0436 5.4275 40 1 0.4871 0.4839 5.4557 41 1 4.0363 1.0489 0.8923 42 1 3.6550 2.6255 -1.7918 43 1 5.2431 2.4033 -0.8806 44 1 5.0342 -0.1130 -1.1298 45 1 3.4460 0.1093 -2.0410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589703574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:06 Heat of formation + Delta-G solvation = -94.956503 kcal Electronic energy + Delta-G solvation = -28176.436477 eV Core-core repulsion = 24285.869188 eV Total energy + Delta-G solvation = -3890.567289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.76811 -39.45777 -38.27360 -37.28547 -36.92505 -35.74910 -35.64534 -31.92055 -31.63484 -31.58530 -28.14856 -27.36790 -26.88842 -24.05545 -23.63747 -23.13377 -22.80609 -20.61810 -20.29421 -19.63740 -18.58653 -17.84066 -17.69700 -17.59143 -16.85831 -16.64210 -16.39925 -16.20283 -15.89535 -15.46907 -15.17288 -15.04984 -14.48342 -14.30501 -14.19577 -13.84002 -13.68360 -13.44039 -13.32431 -13.18362 -13.10129 -13.08458 -13.03458 -12.81677 -12.60993 -12.58471 -12.32688 -12.21931 -12.00788 -11.78442 -11.57731 -11.37404 -11.22046 -11.15993 -10.94354 -10.62734 -10.31662 -9.85513 -9.56769 -8.72832 -6.46844 -0.50271 0.39459 0.83578 1.36592 1.45727 1.48748 2.09903 2.16784 2.54019 2.57947 2.77126 3.24973 3.41504 3.51078 3.59110 3.73418 3.98117 4.15444 4.24502 4.28766 4.36223 4.40754 4.43388 4.47718 4.52220 4.64835 4.69109 4.82840 4.84290 4.90099 4.92753 4.98062 5.01010 5.06352 5.10363 5.19555 5.23286 5.34022 5.38691 5.40039 5.55456 5.87831 5.93389 6.03703 6.10124 6.28900 6.51713 6.78790 6.83619 8.23982 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.003450 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.711412 B = 8113.074194 C = 8794.891988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.383 6.383 3 C 0.143 3.857 4 C -0.181 4.181 5 C 0.089 3.911 6 N -1.099 6.099 7 S 2.719 3.281 8 O -0.983 6.983 9 O -0.998 6.998 10 C -0.639 4.639 11 C -0.147 4.147 12 C -0.122 4.122 13 C -0.140 4.140 14 C 0.063 3.937 15 C -0.499 4.499 16 H 0.076 0.924 17 C 0.039 3.961 18 N -0.821 5.821 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.264 1.264 22 H -0.261 1.261 23 C -0.146 4.146 24 C -0.168 4.168 25 C -0.165 4.165 26 C -0.162 4.162 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.424 0.576 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.292 0.708 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.137 0.912 -14.759 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.303 6.303 3 C 0.102 3.898 4 C -0.239 4.239 5 C -0.037 4.037 6 N -0.861 5.861 7 S 2.812 3.188 8 O -0.973 6.973 9 O -0.988 6.988 10 C -0.727 4.727 11 C -0.167 4.167 12 C -0.141 4.141 13 C -0.159 4.159 14 C 0.060 3.940 15 C -0.528 4.528 16 H 0.094 0.906 17 C -0.177 4.177 18 N -0.446 5.446 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.188 1.188 22 H -0.185 1.185 23 C -0.167 4.167 24 C -0.186 4.186 25 C -0.202 4.202 26 C -0.199 4.199 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.261 0.739 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.698 1.212 -14.400 16.374 hybrid contribution -1.513 -0.780 0.903 1.927 sum 6.186 0.431 -13.497 14.853 Atomic orbital electron populations 1.22935 0.80819 1.03420 1.00730 1.87964 1.20067 1.27358 1.94889 1.21087 0.92225 0.83466 0.92977 1.22526 1.02488 1.01620 0.97246 1.22077 0.98594 0.97490 0.85559 1.55097 1.76878 1.30159 1.23988 1.00777 0.73428 0.72498 0.72101 1.93491 1.77551 1.40807 1.85411 1.93500 1.77149 1.64754 1.63407 1.30226 1.24415 1.03619 1.14486 1.20475 0.95182 0.96403 1.04678 1.21155 0.94919 0.98998 0.99017 1.21696 1.00483 0.93175 1.00579 1.18025 0.91741 0.92892 0.91348 1.19843 0.92659 1.15046 1.25276 0.90561 1.26701 0.97984 0.95846 0.97133 1.69789 1.09587 1.36224 1.29011 0.85243 0.77229 0.78957 0.78305 1.18659 1.18757 1.18500 1.20841 0.96700 0.97912 1.01239 1.22133 0.91827 1.08883 0.95776 1.23301 1.02019 0.94381 1.00475 1.22908 1.02636 0.95214 0.99101 0.94692 0.91868 0.89148 0.89261 0.90084 0.91235 0.91266 0.88520 0.73902 0.84887 0.85383 0.86612 0.89717 0.87574 0.88038 0.86626 0.87848 0.88343 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.20 113.37 1.16 1.54 16 2 O -0.38 -9.21 10.06 -148.98 -1.50 -10.71 16 3 C 0.14 3.01 0.61 -10.79 -0.01 3.00 16 4 C -0.18 -2.82 6.77 71.98 0.49 -2.33 16 5 C 0.09 2.25 5.01 86.38 0.43 2.69 16 6 N -1.10 -32.14 5.17 -187.49 -0.97 -33.11 16 7 S 2.72 100.96 5.74 -56.49 -0.32 100.64 16 8 O -0.98 -38.15 16.73 -128.00 -2.14 -40.29 16 9 O -1.00 -42.62 17.27 -128.00 -2.21 -44.83 16 10 C -0.64 -27.73 5.94 22.22 0.13 -27.60 16 11 C -0.15 -6.09 9.53 22.46 0.21 -5.88 16 12 C -0.12 -5.30 10.02 22.22 0.22 -5.08 16 13 C -0.14 -7.02 8.70 22.73 0.20 -6.82 16 14 C 0.06 3.36 5.58 -21.29 -0.12 3.24 16 15 C -0.50 -26.52 9.06 23.46 0.21 -26.31 16 16 H 0.08 3.96 7.90 -2.91 -0.02 3.94 16 17 C 0.04 1.89 5.18 85.26 0.44 2.34 16 18 N -0.82 -40.61 10.85 21.83 0.24 -40.38 16 19 Si 0.98 37.11 29.59 68.60 2.03 39.14 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 C -0.15 -7.23 9.26 22.73 0.21 -7.02 16 24 C -0.17 -3.33 5.12 -10.80 -0.06 -3.38 16 25 C -0.17 -2.45 9.58 30.62 0.29 -2.16 16 26 C -0.16 -2.63 9.81 30.62 0.30 -2.33 16 27 H 0.03 0.90 6.32 -2.39 -0.02 0.89 16 28 H 0.06 1.13 6.43 -2.39 -0.02 1.11 16 29 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.09 1.15 6.95 -2.39 -0.02 1.14 16 31 H 0.08 1.10 7.06 -2.39 -0.02 1.09 16 32 H 0.07 1.05 6.53 -2.39 -0.02 1.04 16 33 H 0.07 1.83 6.33 -2.39 -0.02 1.81 16 34 H 0.10 2.28 7.75 -2.39 -0.02 2.26 16 35 H 0.42 11.47 7.91 -96.75 -0.77 10.70 16 36 H 0.13 4.75 7.59 -2.91 -0.02 4.72 16 37 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.12 5.97 6.09 -2.91 -0.02 5.96 16 39 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 40 H 0.11 5.20 7.60 -2.91 -0.02 5.17 16 41 H 0.10 2.23 7.03 -2.38 -0.02 2.21 16 42 H 0.12 1.39 5.85 -2.38 -0.01 1.37 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.10 1.56 7.58 -2.39 -0.02 1.54 16 Total: -1.00 -65.20 372.80 -0.50 -65.70 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: 0.26 Total: 39.94 kcal Atomic # 6 Polarization: -80.23 SS G_CDS: 4.12 Total: -76.11 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -0.73 Total: -73.49 kcal Atomic # 8 Polarization: -89.97 SS G_CDS: -5.85 Total: -95.82 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 16 Polarization: 100.96 SS G_CDS: -0.32 Total: 100.64 kcal Total: -65.20 -0.50 -65.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.258 kcal (2) G-P(sol) polarization free energy of solvation -65.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds