Wall clock time and date at job start Tue Mar 31 2020 23:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00236 * 2 1 4 4 C 1.53006 * 109.47451 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47034 * 59.99676 * 3 2 1 6 6 N 1.46495 * 109.47029 * 65.00166 * 5 3 2 7 7 S 1.65600 * 119.99909 * 164.99923 * 6 5 3 8 8 O 1.42101 * 106.40185 * 178.53928 * 7 6 5 9 9 O 1.42096 * 106.40493 * 311.45998 * 7 6 5 10 10 C 1.76199 * 107.21936 * 65.00223 * 7 6 5 11 11 C 1.38654 * 119.87320 * 269.73177 * 10 7 6 12 12 C 1.38614 * 120.50004 * 179.72202 * 11 10 7 13 13 C 1.37639 * 120.25032 * 0.54692 * 12 11 10 14 14 C 1.40703 * 119.74076 * 359.72620 * 13 12 11 15 15 C 1.41397 * 120.23986 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99473 * 155.25468 * 15 14 13 17 17 C 1.39946 * 120.00323 * 335.24971 * 15 14 13 18 18 N 1.30823 * 119.99719 * 342.24946 * 17 15 14 19 19 Si 1.86798 * 120.00032 * 162.24974 * 17 15 14 20 20 H 1.48496 * 109.47091 * 90.00068 * 19 17 15 21 21 H 1.48496 * 109.46768 * 210.00135 * 19 17 15 22 22 H 1.48499 * 109.46900 * 330.00141 * 19 17 15 23 23 C 1.37596 * 119.87864 * 89.99753 * 10 7 6 24 24 C 1.52995 * 109.47283 * 299.99826 * 3 2 1 25 25 C 1.52998 * 117.51920 * 231.28645 * 24 3 2 26 26 C 1.52991 * 60.00186 * 107.47989 * 25 24 3 27 27 H 1.09001 * 109.46810 * 59.99784 * 1 2 3 28 28 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47600 * 300.00667 * 1 2 3 30 30 H 1.08997 * 109.46922 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46770 * 300.00259 * 4 3 2 32 32 H 1.08996 * 109.46578 * 59.99972 * 4 3 2 33 33 H 1.08998 * 109.47197 * 184.99840 * 5 3 2 34 34 H 1.09000 * 109.46932 * 304.99932 * 5 3 2 35 35 H 0.97001 * 120.00047 * 344.99855 * 6 5 3 36 36 H 1.08002 * 119.75180 * 359.97438 * 11 10 7 37 37 H 1.08000 * 119.87628 * 180.25444 * 12 11 10 38 38 H 1.07999 * 120.12985 * 179.75215 * 13 12 11 39 39 H 0.97001 * 120.00112 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.12535 * 359.97438 * 23 10 7 41 41 H 1.09002 * 115.55265 * 85.57765 * 24 3 2 42 42 H 1.09004 * 117.49779 * 214.97443 * 25 24 3 43 43 H 1.09000 * 117.49887 * 359.97438 * 25 24 3 44 44 H 1.09006 * 117.49548 * 252.51008 * 26 25 24 45 45 H 1.09000 * 117.50161 * 107.49220 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 1.5587 2.0648 1.2493 6 7 2.0922 1.4030 2.4424 7 16 2.0861 2.1911 3.8988 8 8 2.6291 1.2838 4.8482 9 8 2.6290 3.4821 3.6588 10 6 0.4012 2.4363 4.3522 11 6 -0.2576 3.5924 3.9625 12 6 -1.5847 3.7961 4.3070 13 6 -2.2601 2.8554 5.0510 14 6 -1.6000 1.6810 5.4568 15 6 -2.2839 0.7075 6.2208 16 1 -1.9586 -0.3222 6.1993 17 6 -3.3822 1.0781 7.0050 18 7 -3.5708 2.3352 7.3140 19 14 -4.5787 -0.2223 7.6105 20 1 -4.1264 -0.7359 8.9284 21 1 -5.9308 0.3757 7.7498 22 1 -4.6301 -1.3405 6.6347 23 6 -0.2542 1.4824 5.0963 24 6 1.5589 2.0647 -1.2492 25 6 2.6426 2.7159 -2.1108 26 6 1.9185 1.4639 -2.6096 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9788 2.1804 0.0002 31 1 3.8567 0.6438 0.8909 32 1 3.8574 0.6436 -0.8891 33 1 1.9291 3.0890 1.2056 34 1 0.4697 2.0739 1.2951 35 1 2.4490 0.5032 2.3793 36 1 0.2660 4.3381 3.3825 37 1 -2.0892 4.6984 3.9946 38 1 -3.2929 3.0180 5.3217 39 1 -4.3323 2.5922 7.8572 40 1 0.2620 0.5844 5.4021 41 1 0.6038 2.5833 -1.1648 42 1 2.4006 3.6631 -2.5930 43 1 3.6775 2.6039 -1.7874 44 1 2.4771 0.5279 -2.6145 45 1 1.2002 1.5872 -3.4200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589703575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:11 Heat of formation + Delta-G solvation = -77.168231 kcal Electronic energy + Delta-G solvation = -28088.617258 eV Core-core repulsion = 24198.821327 eV Total energy + Delta-G solvation = -3889.795931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.96587 -37.65507 -36.65298 -36.33139 -35.29112 -34.74703 -33.85809 -30.67093 -30.09462 -29.80148 -27.15608 -26.14142 -25.50001 -23.20801 -22.49522 -21.90650 -21.00449 -19.59908 -18.98155 -17.98628 -17.25184 -16.79263 -16.27169 -15.97054 -15.66549 -15.21588 -15.14173 -14.85634 -14.73582 -14.24295 -13.82570 -13.50161 -13.34654 -13.11415 -12.69496 -12.63073 -12.59973 -11.94684 -11.91514 -11.82430 -11.56588 -11.52768 -11.48123 -11.41224 -11.39253 -11.35547 -11.05994 -10.88609 -10.81196 -10.62146 -10.56834 -10.37159 -9.83075 -9.72830 -9.59441 -9.35769 -9.10619 -8.05514 -7.71870 -6.93867 -4.54942 1.02993 2.18371 2.61876 2.98882 3.00574 3.07005 3.34675 3.59040 3.81808 3.91436 4.23620 4.30642 4.42110 4.55758 4.70354 4.81802 4.90718 4.99908 5.19103 5.35341 5.39755 5.40977 5.43764 5.50300 5.55754 5.62446 5.64305 5.76522 5.83515 5.90898 5.93693 6.00423 6.07201 6.12446 6.16435 6.64293 6.74319 6.83358 7.01629 7.12426 7.19298 7.26386 7.37038 7.70431 7.78876 7.92567 8.38403 8.65365 8.70169 10.01821 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.003341 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.777093 B = 8379.644639 C = 9026.233552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.371 6.371 3 C 0.142 3.858 4 C -0.142 4.142 5 C 0.098 3.902 6 N -1.115 6.115 7 S 2.689 3.311 8 O -0.971 6.971 9 O -0.975 6.975 10 C -0.631 4.631 11 C -0.150 4.150 12 C -0.121 4.121 13 C -0.119 4.119 14 C 0.092 3.908 15 C -0.461 4.461 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.793 5.793 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.124 4.124 24 C -0.184 4.184 25 C -0.175 4.175 26 C -0.164 4.164 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.416 0.584 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.284 0.716 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -1.315 -16.039 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.290 6.290 3 C 0.101 3.899 4 C -0.199 4.199 5 C -0.029 4.029 6 N -0.874 5.874 7 S 2.785 3.215 8 O -0.962 6.962 9 O -0.965 6.965 10 C -0.723 4.723 11 C -0.172 4.172 12 C -0.140 4.140 13 C -0.138 4.138 14 C 0.088 3.912 15 C -0.490 4.490 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.418 5.418 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.145 4.145 24 C -0.203 4.203 25 C -0.212 4.212 26 C -0.201 4.201 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.251 0.749 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.573 -0.889 -15.415 16.781 hybrid contribution -1.679 -0.580 0.362 1.813 sum 4.894 -1.469 -15.053 15.896 Atomic orbital electron populations 1.22808 0.81013 1.02824 1.00674 1.87947 1.19987 1.26323 1.94736 1.21081 0.94367 0.83243 0.91198 1.21885 0.92079 1.02945 1.03035 1.21783 0.99361 0.97081 0.84656 1.55492 1.78373 1.29756 1.23756 1.01667 0.75064 0.72958 0.71852 1.93543 1.78433 1.64991 1.59208 1.93505 1.77736 1.40268 1.85013 1.29748 1.22956 1.04462 1.15154 1.20078 0.95579 0.96089 1.05416 1.20805 0.94562 0.98599 1.00056 1.21627 1.00051 0.95069 0.97099 1.17678 0.90229 0.92744 0.90505 1.19604 1.10594 0.96157 1.22615 0.89947 1.25939 0.97695 0.96196 0.94502 1.69782 1.26546 1.17850 1.27642 0.86253 0.79169 0.81230 0.79824 1.19291 1.20000 1.18316 1.20760 0.94662 0.97964 1.01103 1.22805 1.00774 1.04516 0.92250 1.23142 0.97803 0.97142 1.03134 1.22848 1.03504 0.97740 0.95967 0.93878 0.89758 0.92906 0.90358 0.91273 0.91657 0.89334 0.90881 0.74854 0.87665 0.88436 0.85815 0.90539 0.87054 0.87339 0.88711 0.87825 0.88373 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.32 101.05 1.04 1.29 16 2 O -0.37 -4.41 10.06 -35.23 -0.35 -4.77 16 3 C 0.14 1.53 0.61 -90.62 -0.05 1.48 16 4 C -0.14 -1.39 7.22 37.16 0.27 -1.12 16 5 C 0.10 1.25 4.92 -4.04 -0.02 1.23 16 6 N -1.11 -16.06 5.40 -10.61 -0.06 -16.11 16 7 S 2.69 50.33 5.73 -107.50 -0.62 49.71 16 8 O -0.97 -20.69 17.27 -57.17 -0.99 -21.68 16 9 O -0.98 -19.72 16.73 -57.17 -0.96 -20.68 16 10 C -0.63 -13.66 5.94 -39.66 -0.24 -13.89 16 11 C -0.15 -3.20 9.53 -39.29 -0.37 -3.58 16 12 C -0.12 -2.67 10.02 -39.66 -0.40 -3.06 16 13 C -0.12 -2.92 8.70 -38.87 -0.34 -3.25 16 14 C 0.09 2.36 5.57 -106.82 -0.60 1.76 16 15 C -0.46 -11.75 9.05 -37.74 -0.34 -12.10 16 16 H 0.08 2.01 7.91 -52.48 -0.41 1.60 16 17 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 18 N -0.79 -19.72 10.97 55.55 0.61 -19.11 16 19 Si 0.91 17.95 29.60 -169.99 -5.03 12.92 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 24 C -0.18 -1.71 3.95 -90.62 -0.36 -2.06 16 25 C -0.18 -1.38 9.57 -26.74 -0.26 -1.63 16 26 C -0.16 -1.32 9.80 -26.74 -0.26 -1.58 16 27 H 0.04 0.41 7.10 -51.93 -0.37 0.04 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.64 6.31 -51.93 -0.33 0.31 16 30 H 0.08 0.70 6.97 -51.93 -0.36 0.34 16 31 H 0.07 0.70 6.89 -51.93 -0.36 0.34 16 32 H 0.06 0.57 7.07 -51.93 -0.37 0.20 16 33 H 0.09 1.11 7.75 -51.93 -0.40 0.70 16 34 H 0.07 0.94 6.29 -51.93 -0.33 0.62 16 35 H 0.42 5.40 7.58 -34.47 -0.26 5.13 16 36 H 0.11 2.01 7.59 -52.49 -0.40 1.62 16 37 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.12 3.09 6.18 -52.49 -0.32 2.77 16 39 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 40 H 0.11 2.58 7.60 -52.48 -0.40 2.18 16 41 H 0.11 0.99 8.05 -51.93 -0.42 0.57 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.76 5.85 -51.93 -0.30 0.46 16 44 H 0.10 0.82 7.60 -51.93 -0.39 0.43 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -30.49 374.20 -10.38 -40.87 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.25 Total: 11.33 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: -2.37 Total: -38.12 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.55 Total: -35.23 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -2.30 Total: -47.12 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 16 Polarization: 50.33 SS G_CDS: -0.62 Total: 49.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.49 -10.38 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.299 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds