Wall clock time and date at job start Tue Mar 31 2020 23:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00236 * 2 1 4 4 C 1.53006 * 109.47451 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47034 * 59.99676 * 3 2 1 6 6 N 1.46495 * 109.47029 * 65.00166 * 5 3 2 7 7 S 1.65600 * 119.99909 * 164.99923 * 6 5 3 8 8 O 1.42101 * 106.40185 * 178.53928 * 7 6 5 9 9 O 1.42096 * 106.40493 * 311.45998 * 7 6 5 10 10 C 1.76199 * 107.21936 * 65.00223 * 7 6 5 11 11 C 1.38654 * 119.87320 * 269.73177 * 10 7 6 12 12 C 1.38614 * 120.50004 * 179.72202 * 11 10 7 13 13 C 1.37639 * 120.25032 * 0.54692 * 12 11 10 14 14 C 1.40703 * 119.74076 * 359.72620 * 13 12 11 15 15 C 1.41397 * 120.23986 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99473 * 155.25468 * 15 14 13 17 17 C 1.39946 * 120.00323 * 335.24971 * 15 14 13 18 18 N 1.30823 * 119.99719 * 342.24946 * 17 15 14 19 19 Si 1.86798 * 120.00032 * 162.24974 * 17 15 14 20 20 H 1.48496 * 109.47091 * 90.00068 * 19 17 15 21 21 H 1.48496 * 109.46768 * 210.00135 * 19 17 15 22 22 H 1.48499 * 109.46900 * 330.00141 * 19 17 15 23 23 C 1.37596 * 119.87864 * 89.99753 * 10 7 6 24 24 C 1.52995 * 109.47283 * 299.99826 * 3 2 1 25 25 C 1.52998 * 117.51920 * 231.28645 * 24 3 2 26 26 C 1.52991 * 60.00186 * 107.47989 * 25 24 3 27 27 H 1.09001 * 109.46810 * 59.99784 * 1 2 3 28 28 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47600 * 300.00667 * 1 2 3 30 30 H 1.08997 * 109.46922 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46770 * 300.00259 * 4 3 2 32 32 H 1.08996 * 109.46578 * 59.99972 * 4 3 2 33 33 H 1.08998 * 109.47197 * 184.99840 * 5 3 2 34 34 H 1.09000 * 109.46932 * 304.99932 * 5 3 2 35 35 H 0.97001 * 120.00047 * 344.99855 * 6 5 3 36 36 H 1.08002 * 119.75180 * 359.97438 * 11 10 7 37 37 H 1.08000 * 119.87628 * 180.25444 * 12 11 10 38 38 H 1.07999 * 120.12985 * 179.75215 * 13 12 11 39 39 H 0.97001 * 120.00112 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.12535 * 359.97438 * 23 10 7 41 41 H 1.09002 * 115.55265 * 85.57765 * 24 3 2 42 42 H 1.09004 * 117.49779 * 214.97443 * 25 24 3 43 43 H 1.09000 * 117.49887 * 359.97438 * 25 24 3 44 44 H 1.09006 * 117.49548 * 252.51008 * 26 25 24 45 45 H 1.09000 * 117.50161 * 107.49220 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 1.5587 2.0648 1.2493 6 7 2.0922 1.4030 2.4424 7 16 2.0861 2.1911 3.8988 8 8 2.6291 1.2838 4.8482 9 8 2.6290 3.4821 3.6588 10 6 0.4012 2.4363 4.3522 11 6 -0.2576 3.5924 3.9625 12 6 -1.5847 3.7961 4.3070 13 6 -2.2601 2.8554 5.0510 14 6 -1.6000 1.6810 5.4568 15 6 -2.2839 0.7075 6.2208 16 1 -1.9586 -0.3222 6.1993 17 6 -3.3822 1.0781 7.0050 18 7 -3.5708 2.3352 7.3140 19 14 -4.5787 -0.2223 7.6105 20 1 -4.1264 -0.7359 8.9284 21 1 -5.9308 0.3757 7.7498 22 1 -4.6301 -1.3405 6.6347 23 6 -0.2542 1.4824 5.0963 24 6 1.5589 2.0647 -1.2492 25 6 2.6426 2.7159 -2.1108 26 6 1.9185 1.4639 -2.6096 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9788 2.1804 0.0002 31 1 3.8567 0.6438 0.8909 32 1 3.8574 0.6436 -0.8891 33 1 1.9291 3.0890 1.2056 34 1 0.4697 2.0739 1.2951 35 1 2.4490 0.5032 2.3793 36 1 0.2660 4.3381 3.3825 37 1 -2.0892 4.6984 3.9946 38 1 -3.2929 3.0180 5.3217 39 1 -4.3323 2.5922 7.8572 40 1 0.2620 0.5844 5.4021 41 1 0.6038 2.5833 -1.1648 42 1 2.4006 3.6631 -2.5930 43 1 3.6775 2.6039 -1.7874 44 1 2.4771 0.5279 -2.6145 45 1 1.2002 1.5872 -3.4200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589703575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:10 Heat of formation + Delta-G solvation = -96.802206 kcal Electronic energy + Delta-G solvation = -28089.468651 eV Core-core repulsion = 24198.821327 eV Total energy + Delta-G solvation = -3890.647324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.79102 -39.45651 -38.27249 -37.08394 -36.92060 -35.87509 -35.66978 -31.92669 -31.64289 -31.50506 -28.10832 -27.35422 -26.97583 -24.05156 -23.67872 -23.11591 -22.80548 -20.76094 -20.21189 -19.59125 -18.61123 -17.82682 -17.61352 -17.41410 -16.87536 -16.69634 -16.43445 -16.29244 -15.80808 -15.50015 -15.18182 -15.06202 -14.63555 -14.31887 -14.03531 -13.77033 -13.63838 -13.42236 -13.27723 -13.17901 -13.07348 -13.05166 -12.97105 -12.86224 -12.65046 -12.59266 -12.45565 -12.20876 -12.03874 -11.62569 -11.57787 -11.38677 -11.23051 -11.14740 -11.07576 -10.63015 -10.29364 -9.85803 -9.56819 -8.74329 -6.46389 -0.50692 0.39543 0.83444 1.36587 1.43718 1.51712 2.09771 2.17423 2.53636 2.67617 2.78130 3.16012 3.37667 3.50439 3.61544 3.75718 3.93894 4.13238 4.19686 4.29546 4.34677 4.41709 4.45021 4.55371 4.61977 4.71186 4.79602 4.83501 4.85419 4.88370 4.89450 4.98147 5.02176 5.06199 5.09191 5.19308 5.22723 5.34227 5.39116 5.40082 5.55514 5.87403 5.92621 6.05780 6.10034 6.29126 6.51412 6.78686 6.83571 8.23938 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.003341 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.777093 B = 8379.644639 C = 9026.233552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.382 6.382 3 C 0.144 3.856 4 C -0.146 4.146 5 C 0.089 3.911 6 N -1.098 6.098 7 S 2.720 3.280 8 O -0.997 6.997 9 O -0.984 6.984 10 C -0.638 4.638 11 C -0.147 4.147 12 C -0.122 4.122 13 C -0.140 4.140 14 C 0.064 3.936 15 C -0.499 4.499 16 H 0.079 0.921 17 C 0.037 3.963 18 N -0.824 5.824 19 Si 0.984 3.016 20 H -0.264 1.264 21 H -0.263 1.263 22 H -0.257 1.257 23 C -0.146 4.146 24 C -0.198 4.198 25 C -0.168 4.168 26 C -0.159 4.159 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.425 0.575 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.292 0.708 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 -1.053 -17.769 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.301 6.301 3 C 0.104 3.896 4 C -0.203 4.203 5 C -0.037 4.037 6 N -0.861 5.861 7 S 2.812 3.188 8 O -0.988 6.988 9 O -0.974 6.974 10 C -0.727 4.727 11 C -0.168 4.168 12 C -0.141 4.141 13 C -0.159 4.159 14 C 0.061 3.939 15 C -0.528 4.528 16 H 0.097 0.903 17 C -0.179 4.179 18 N -0.450 5.450 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.187 1.187 22 H -0.181 1.181 23 C -0.167 4.167 24 C -0.217 4.217 25 C -0.204 4.204 26 C -0.196 4.196 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.262 0.738 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.897 -0.616 -17.140 18.486 hybrid contribution -1.678 -0.593 0.781 1.944 sum 5.219 -1.209 -16.359 17.214 Atomic orbital electron populations 1.22849 0.80772 1.03310 1.00549 1.87935 1.20339 1.27106 1.94756 1.21115 0.94934 0.82776 0.90823 1.21958 0.91285 1.03707 1.03356 1.22059 0.99327 0.97722 0.84641 1.55114 1.78025 1.30173 1.22780 1.00773 0.73401 0.72500 0.72105 1.93503 1.78443 1.65608 1.61221 1.93489 1.77255 1.41192 1.85430 1.30236 1.24618 1.03852 1.13961 1.20471 0.95425 0.96263 1.04615 1.21146 0.95039 0.98963 0.98925 1.21637 0.99919 0.95816 0.98568 1.18025 0.91184 0.93534 0.91206 1.19865 1.12470 0.96223 1.24237 0.90264 1.26768 0.98692 0.98339 0.94086 1.69820 1.27365 1.19554 1.28231 0.85176 0.76986 0.78335 0.79110 1.18897 1.18742 1.18054 1.20819 0.94536 0.98809 1.02521 1.22744 1.01482 1.05443 0.92012 1.23244 0.97668 0.97479 1.02053 1.22889 1.03553 0.97824 0.95287 0.92462 0.89080 0.94531 0.89335 0.91905 0.90467 0.88611 0.91159 0.73752 0.84930 0.85455 0.86937 0.89731 0.87471 0.87323 0.87704 0.87230 0.88626 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.32 113.37 1.17 1.62 16 2 O -0.38 -8.58 10.06 -148.98 -1.50 -10.07 16 3 C 0.14 2.86 0.61 -10.79 -0.01 2.86 16 4 C -0.15 -2.54 7.22 71.98 0.52 -2.02 16 5 C 0.09 2.13 4.92 86.38 0.43 2.55 16 6 N -1.10 -30.47 5.40 -187.49 -1.01 -31.48 16 7 S 2.72 99.73 5.73 -56.49 -0.32 99.41 16 8 O -1.00 -42.40 17.27 -128.00 -2.21 -44.61 16 9 O -0.98 -38.09 16.73 -128.00 -2.14 -40.24 16 10 C -0.64 -27.56 5.94 22.22 0.13 -27.42 16 11 C -0.15 -6.11 9.53 22.46 0.21 -5.89 16 12 C -0.12 -5.30 10.02 22.22 0.22 -5.08 16 13 C -0.14 -7.02 8.70 22.73 0.20 -6.83 16 14 C 0.06 3.38 5.57 -21.29 -0.12 3.26 16 15 C -0.50 -26.45 9.05 23.46 0.21 -26.24 16 16 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 17 C 0.04 1.80 5.14 85.26 0.44 2.23 16 18 N -0.82 -41.85 10.97 21.83 0.24 -41.61 16 19 Si 0.98 37.13 29.60 68.60 2.03 39.16 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 21 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 23 C -0.15 -7.19 9.26 22.73 0.21 -6.98 16 24 C -0.20 -3.22 3.95 -10.80 -0.04 -3.26 16 25 C -0.17 -2.16 9.57 30.59 0.29 -1.87 16 26 C -0.16 -2.17 9.80 30.59 0.30 -1.87 16 27 H 0.06 1.02 7.10 -2.39 -0.02 1.00 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 0.87 6.31 -2.39 -0.02 0.86 16 30 H 0.09 1.35 6.97 -2.39 -0.02 1.33 16 31 H 0.06 1.16 6.89 -2.38 -0.02 1.14 16 32 H 0.08 1.15 7.07 -2.39 -0.02 1.14 16 33 H 0.10 2.18 7.75 -2.39 -0.02 2.16 16 34 H 0.07 1.74 6.29 -2.39 -0.02 1.73 16 35 H 0.43 10.62 7.58 -96.74 -0.73 9.88 16 36 H 0.13 4.74 7.59 -2.91 -0.02 4.72 16 37 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 38 H 0.11 5.82 6.18 -2.91 -0.02 5.80 16 39 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 40 H 0.11 5.20 7.60 -2.91 -0.02 5.18 16 41 H 0.11 1.76 8.05 -2.39 -0.02 1.74 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.11 1.28 5.85 -2.39 -0.01 1.27 16 44 H 0.10 1.37 7.60 -2.38 -0.02 1.35 16 45 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -65.78 374.20 -0.47 -66.25 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: 0.28 Total: 38.13 kcal Atomic # 6 Polarization: -79.10 SS G_CDS: 4.17 Total: -74.93 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -0.77 Total: -73.09 kcal Atomic # 8 Polarization: -89.07 SS G_CDS: -5.85 Total: -94.92 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 99.73 SS G_CDS: -0.32 Total: 99.41 kcal Total: -65.78 -0.47 -66.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.555 kcal (2) G-P(sol) polarization free energy of solvation -65.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds