Wall clock time and date at job start Tue Mar 31 2020 23:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.05426 * 2 1 4 4 C 1.54268 * 110.03498 * 238.57965 * 2 1 3 5 5 C 1.54888 * 104.31334 * 217.17132 * 4 2 1 6 6 C 1.54885 * 102.74984 * 37.87657 * 5 4 2 7 7 C 1.54084 * 110.15988 * 121.46552 * 2 1 3 8 8 O 1.42898 * 110.11614 * 238.46741 * 7 2 1 9 9 C 1.53003 * 109.96999 * 359.86057 * 7 2 1 10 10 N 1.46504 * 109.47142 * 178.61233 * 9 7 2 11 11 S 1.65597 * 119.99687 * 164.99888 * 10 9 7 12 12 O 1.42105 * 106.40210 * 178.53844 * 11 10 9 13 13 O 1.42107 * 106.40638 * 311.45521 * 11 10 9 14 14 C 1.76200 * 107.21936 * 64.99902 * 11 10 9 15 15 C 1.38661 * 119.87442 * 269.72374 * 14 11 10 16 16 C 1.38609 * 120.49917 * 179.72243 * 15 14 11 17 17 C 1.37639 * 120.24798 * 0.55553 * 16 15 14 18 18 C 1.40696 * 119.74693 * 359.72265 * 17 16 15 19 19 C 1.41392 * 120.24869 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00379 * 204.40595 * 19 18 17 21 21 C 1.39952 * 119.99895 * 24.40735 * 19 18 17 22 22 N 1.30822 * 119.99783 * 17.84121 * 21 19 18 23 23 Si 1.86799 * 119.99880 * 197.84658 * 21 19 18 24 24 H 1.48500 * 109.47373 * 59.99937 * 23 21 19 25 25 H 1.48505 * 109.46971 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47154 * 299.99172 * 23 21 19 27 27 C 1.37594 * 119.87585 * 90.00101 * 14 11 10 28 28 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47318 * 299.96499 * 1 2 3 30 30 H 1.09000 * 109.46716 * 59.96921 * 1 2 3 31 31 H 1.09002 * 110.48310 * 98.42906 * 4 2 1 32 32 H 1.08997 * 110.48601 * 335.92024 * 4 2 1 33 33 H 1.09001 * 110.75684 * 156.19132 * 5 4 2 34 34 H 1.09000 * 110.75629 * 279.56139 * 5 4 2 35 35 H 1.09001 * 110.48530 * 80.73630 * 6 5 4 36 36 H 1.09001 * 110.49154 * 203.24437 * 6 5 4 37 37 H 0.96699 * 114.00634 * 181.30872 * 8 7 2 38 38 H 1.09006 * 109.46874 * 298.60670 * 9 7 2 39 39 H 1.08999 * 109.47426 * 58.60968 * 9 7 2 40 40 H 0.96996 * 119.99747 * 344.99578 * 10 9 7 41 41 H 1.08001 * 119.74885 * 359.97438 * 15 14 11 42 42 H 1.07999 * 119.87653 * 180.27806 * 16 15 14 43 43 H 1.07996 * 120.12956 * 179.70762 * 17 16 15 44 44 H 0.97004 * 119.99780 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.12729 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3132 -1.5033 -0.7215 6 6 2.8885 -1.9433 0.7016 7 6 2.0610 -0.7550 1.2337 8 8 2.8892 0.1059 2.0180 9 6 0.8912 -1.2668 2.0767 10 7 1.4077 -2.0108 3.2282 11 16 0.4102 -2.3608 4.5028 12 8 1.1881 -3.1083 5.4277 13 8 -0.2478 -1.1479 4.8425 14 6 -0.8367 -3.4527 3.9048 15 6 -2.0186 -2.9378 3.3940 16 6 -3.0058 -3.7847 2.9148 17 6 -2.8269 -5.1489 2.9517 18 6 -1.6342 -5.6827 3.4731 19 6 -1.4395 -7.0825 3.5166 20 1 -0.7566 -7.5107 4.2354 21 6 -2.1319 -7.9132 2.6282 22 7 -2.6757 -7.4092 1.5504 23 14 -2.2796 -9.7415 2.9816 24 1 -2.9779 -9.9406 4.2770 25 1 -3.0551 -10.3944 1.8964 26 1 -0.9238 -10.3431 3.0524 27 6 -0.6364 -4.8132 3.9515 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5133 0.8903 30 1 -0.3633 0.5143 -0.8897 31 1 2.3298 -0.0537 -2.0254 32 1 1.3134 -1.4644 -1.5980 33 1 3.5295 -2.3705 -1.3454 34 1 4.1718 -0.8332 -0.6784 35 1 2.2765 -2.8441 0.6556 36 1 3.7654 -2.1106 1.3269 37 1 3.2700 -0.3187 2.7988 38 1 0.2983 -0.4216 2.4265 39 1 0.2664 -1.9229 1.4708 40 1 2.3340 -2.2983 3.2440 41 1 -2.1694 -1.8688 3.3657 42 1 -3.9205 -3.3726 2.5150 43 1 -3.5993 -5.8071 2.5822 44 1 -3.1559 -7.9850 0.9348 45 1 0.2829 -5.2122 4.3543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590175565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:24 Heat of formation + Delta-G solvation = -124.541124 kcal Electronic energy + Delta-G solvation = -28270.278635 eV Core-core repulsion = 24378.428461 eV Total energy + Delta-G solvation = -3891.850174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.95378 -37.67717 -36.69385 -35.40149 -35.32388 -34.30095 -33.88046 -31.62433 -30.11581 -29.82758 -28.58923 -25.53261 -25.24301 -24.27380 -21.93707 -21.20717 -21.02678 -19.27855 -18.99255 -18.01283 -17.46791 -16.88129 -16.00116 -15.86883 -15.61303 -15.16983 -15.15217 -14.76521 -14.42156 -13.95456 -13.85349 -13.51050 -13.38792 -13.05352 -12.84978 -12.60773 -12.25755 -12.01591 -11.90664 -11.76588 -11.64177 -11.56356 -11.48886 -11.44165 -11.38942 -11.18098 -11.04666 -10.91174 -10.81580 -10.71912 -10.66105 -10.46439 -9.93055 -9.83324 -9.70027 -9.38041 -9.18599 -8.08244 -7.74660 -6.96767 -4.57505 0.98334 2.15457 2.60428 2.96911 2.98956 3.05717 3.50614 3.79614 3.98709 4.19312 4.32982 4.39931 4.46224 4.59021 4.93382 5.05327 5.15492 5.19767 5.31241 5.36322 5.37295 5.42500 5.59523 5.61783 5.70327 5.77442 5.84513 5.86893 5.95393 6.01899 6.07819 6.12424 6.14608 6.17912 6.29899 6.61593 6.72361 6.79605 6.98649 7.09767 7.18292 7.34424 7.56784 7.68977 7.76978 7.90503 8.36287 8.63005 8.67853 9.98589 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.003709 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.376044 B = 7546.816893 C = 8409.360371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.079 4.079 3 H 0.086 0.914 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.155 4.155 7 C 0.129 3.871 8 O -0.553 6.553 9 C 0.093 3.907 10 N -1.123 6.123 11 S 2.690 3.310 12 O -0.973 6.973 13 O -0.973 6.973 14 C -0.631 4.631 15 C -0.150 4.150 16 C -0.120 4.120 17 C -0.118 4.118 18 C 0.092 3.908 19 C -0.461 4.461 20 H 0.082 0.918 21 C 0.076 3.924 22 N -0.794 5.794 23 Si 0.912 3.088 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.124 4.124 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.375 0.625 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.409 0.591 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.125 0.875 44 H 0.284 0.716 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.225 9.020 -6.255 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.099 4.099 3 H 0.105 0.895 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.192 4.192 7 C 0.087 3.913 8 O -0.359 6.359 9 C -0.033 4.033 10 N -0.881 5.881 11 S 2.786 3.214 12 O -0.963 6.963 13 O -0.963 6.963 14 C -0.723 4.723 15 C -0.171 4.171 16 C -0.139 4.139 17 C -0.138 4.138 18 C 0.089 3.911 19 C -0.490 4.490 20 H 0.101 0.899 21 C -0.142 4.142 22 N -0.419 5.419 23 Si 0.736 3.264 24 H -0.186 1.186 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.146 4.146 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.222 0.778 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.243 0.757 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.095 0.905 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.847 9.795 -6.085 13.411 hybrid contribution 0.009 -1.929 -0.074 1.930 sum 6.856 7.866 -6.159 12.117 Atomic orbital electron populations 1.22072 0.94109 1.02963 1.02411 1.21692 0.95939 1.00198 0.92034 0.89536 1.22473 0.97547 0.99056 0.96764 1.22419 0.97781 0.99879 0.95712 1.23119 1.00156 0.98543 0.97430 1.22105 0.89057 0.89565 0.90574 1.86533 1.66985 1.41054 1.41370 1.22263 0.97064 0.96416 0.87547 1.55620 1.24330 1.71560 1.36633 1.01640 0.73502 0.73798 0.72467 1.93540 1.70290 1.72913 1.59583 1.93518 1.75677 1.45391 1.81721 1.29712 1.14131 1.08979 1.19505 1.20081 0.94443 0.97814 1.04775 1.20806 0.97861 0.94363 1.00906 1.21638 0.97539 0.93562 1.01075 1.17674 0.90285 0.93230 0.89952 1.19598 1.22554 0.90985 1.15861 0.89941 1.25929 0.93097 1.01810 0.93396 1.69768 1.25939 1.38624 1.07554 0.86300 0.79604 0.81232 0.79301 1.18650 1.20218 1.18809 1.20774 0.99064 0.90547 1.04183 0.91442 0.91729 0.92133 0.91424 0.90942 0.91382 0.91385 0.89821 0.90994 0.77763 0.89312 0.89971 0.75735 0.87615 0.88383 0.85758 0.90505 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 7.89 37.16 0.29 -1.30 16 2 C -0.08 -0.82 3.32 -89.39 -0.30 -1.12 16 3 H 0.09 0.92 7.96 -51.93 -0.41 0.51 16 4 C -0.12 -1.10 6.35 -25.07 -0.16 -1.26 16 5 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 6 C -0.15 -1.58 5.28 -25.07 -0.13 -1.71 16 7 C 0.13 1.44 1.05 -89.39 -0.09 1.35 16 8 O -0.55 -6.41 12.91 -35.23 -0.45 -6.86 16 9 C 0.09 1.21 4.04 -4.04 -0.02 1.19 16 10 N -1.12 -15.39 5.47 -10.61 -0.06 -15.44 16 11 S 2.69 48.91 5.73 -107.50 -0.62 48.29 16 12 O -0.97 -19.89 17.27 -57.17 -0.99 -20.88 16 13 O -0.97 -19.49 16.73 -57.17 -0.96 -20.45 16 14 C -0.63 -13.40 5.94 -39.66 -0.24 -13.63 16 15 C -0.15 -3.15 9.53 -39.29 -0.37 -3.53 16 16 C -0.12 -2.62 10.02 -39.66 -0.40 -3.02 16 17 C -0.12 -2.88 8.70 -38.87 -0.34 -3.22 16 18 C 0.09 2.33 5.57 -106.83 -0.60 1.73 16 19 C -0.46 -11.62 9.05 -37.74 -0.34 -11.96 16 20 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 21 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 22 N -0.79 -19.18 10.95 55.55 0.61 -18.57 16 23 Si 0.91 17.76 29.60 -169.99 -5.03 12.73 16 24 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 25 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 27 C -0.12 -2.92 9.26 -38.87 -0.36 -3.28 16 28 H 0.07 0.71 6.62 -51.93 -0.34 0.37 16 29 H 0.06 0.67 6.87 -51.93 -0.36 0.32 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 36 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 37 H 0.37 3.42 8.22 45.56 0.37 3.79 16 38 H 0.09 1.20 6.49 -51.93 -0.34 0.86 16 39 H 0.08 1.09 6.61 -51.93 -0.34 0.74 16 40 H 0.41 4.57 7.62 -34.47 -0.26 4.31 16 41 H 0.11 2.00 7.59 -52.49 -0.40 1.61 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 44 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 45 H 0.11 2.50 7.60 -52.49 -0.40 2.11 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -30.35 370.37 -10.92 -41.27 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.70 Total: 13.66 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: -3.31 Total: -39.33 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.55 Total: -34.02 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -2.40 Total: -48.19 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 16 Polarization: 48.91 SS G_CDS: -0.62 Total: 48.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.35 -10.92 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590175565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.267 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds