Wall clock time and date at job start Tue Mar 31 2020 23:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.05426 * 2 1 4 4 C 1.54268 * 110.03498 * 238.57965 * 2 1 3 5 5 C 1.54888 * 104.31334 * 217.17132 * 4 2 1 6 6 C 1.54885 * 102.74984 * 37.87657 * 5 4 2 7 7 C 1.54084 * 110.15988 * 121.46552 * 2 1 3 8 8 O 1.42898 * 110.11614 * 238.46741 * 7 2 1 9 9 C 1.53003 * 109.96999 * 359.86057 * 7 2 1 10 10 N 1.46504 * 109.47142 * 178.61233 * 9 7 2 11 11 S 1.65597 * 119.99687 * 164.99888 * 10 9 7 12 12 O 1.42105 * 106.40210 * 178.53844 * 11 10 9 13 13 O 1.42107 * 106.40638 * 311.45521 * 11 10 9 14 14 C 1.76200 * 107.21936 * 64.99902 * 11 10 9 15 15 C 1.38661 * 119.87442 * 269.72374 * 14 11 10 16 16 C 1.38609 * 120.49917 * 179.72243 * 15 14 11 17 17 C 1.37639 * 120.24798 * 0.55553 * 16 15 14 18 18 C 1.40696 * 119.74693 * 359.72265 * 17 16 15 19 19 C 1.41392 * 120.24869 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00379 * 204.40595 * 19 18 17 21 21 C 1.39952 * 119.99895 * 24.40735 * 19 18 17 22 22 N 1.30822 * 119.99783 * 17.84121 * 21 19 18 23 23 Si 1.86799 * 119.99880 * 197.84658 * 21 19 18 24 24 H 1.48500 * 109.47373 * 59.99937 * 23 21 19 25 25 H 1.48505 * 109.46971 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47154 * 299.99172 * 23 21 19 27 27 C 1.37594 * 119.87585 * 90.00101 * 14 11 10 28 28 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47318 * 299.96499 * 1 2 3 30 30 H 1.09000 * 109.46716 * 59.96921 * 1 2 3 31 31 H 1.09002 * 110.48310 * 98.42906 * 4 2 1 32 32 H 1.08997 * 110.48601 * 335.92024 * 4 2 1 33 33 H 1.09001 * 110.75684 * 156.19132 * 5 4 2 34 34 H 1.09000 * 110.75629 * 279.56139 * 5 4 2 35 35 H 1.09001 * 110.48530 * 80.73630 * 6 5 4 36 36 H 1.09001 * 110.49154 * 203.24437 * 6 5 4 37 37 H 0.96699 * 114.00634 * 181.30872 * 8 7 2 38 38 H 1.09006 * 109.46874 * 298.60670 * 9 7 2 39 39 H 1.08999 * 109.47426 * 58.60968 * 9 7 2 40 40 H 0.96996 * 119.99747 * 344.99578 * 10 9 7 41 41 H 1.08001 * 119.74885 * 359.97438 * 15 14 11 42 42 H 1.07999 * 119.87653 * 180.27806 * 16 15 14 43 43 H 1.07996 * 120.12956 * 179.70762 * 17 16 15 44 44 H 0.97004 * 119.99780 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.12729 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3132 -1.5033 -0.7215 6 6 2.8885 -1.9433 0.7016 7 6 2.0610 -0.7550 1.2337 8 8 2.8892 0.1059 2.0180 9 6 0.8912 -1.2668 2.0767 10 7 1.4077 -2.0108 3.2282 11 16 0.4102 -2.3608 4.5028 12 8 1.1881 -3.1083 5.4277 13 8 -0.2478 -1.1479 4.8425 14 6 -0.8367 -3.4527 3.9048 15 6 -2.0186 -2.9378 3.3940 16 6 -3.0058 -3.7847 2.9148 17 6 -2.8269 -5.1489 2.9517 18 6 -1.6342 -5.6827 3.4731 19 6 -1.4395 -7.0825 3.5166 20 1 -0.7566 -7.5107 4.2354 21 6 -2.1319 -7.9132 2.6282 22 7 -2.6757 -7.4092 1.5504 23 14 -2.2796 -9.7415 2.9816 24 1 -2.9779 -9.9406 4.2770 25 1 -3.0551 -10.3944 1.8964 26 1 -0.9238 -10.3431 3.0524 27 6 -0.6364 -4.8132 3.9515 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5133 0.8903 30 1 -0.3633 0.5143 -0.8897 31 1 2.3298 -0.0537 -2.0254 32 1 1.3134 -1.4644 -1.5980 33 1 3.5295 -2.3705 -1.3454 34 1 4.1718 -0.8332 -0.6784 35 1 2.2765 -2.8441 0.6556 36 1 3.7654 -2.1106 1.3269 37 1 3.2700 -0.3187 2.7988 38 1 0.2983 -0.4216 2.4265 39 1 0.2664 -1.9229 1.4708 40 1 2.3340 -2.2983 3.2440 41 1 -2.1694 -1.8688 3.3657 42 1 -3.9205 -3.3726 2.5150 43 1 -3.5993 -5.8071 2.5822 44 1 -3.1559 -7.9850 0.9348 45 1 0.2829 -5.2122 4.3543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590175565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:23 Heat of formation + Delta-G solvation = -145.623293 kcal Electronic energy + Delta-G solvation = -28271.192826 eV Core-core repulsion = 24378.428461 eV Total energy + Delta-G solvation = -3892.764366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.82577 -39.44912 -38.27898 -36.93404 -36.26704 -35.68268 -35.38803 -32.42143 -31.91582 -31.59020 -29.51639 -27.35010 -26.09130 -25.20401 -23.67461 -22.80184 -22.01051 -20.64208 -20.00962 -19.62872 -18.67901 -18.09138 -17.72834 -17.00533 -16.80783 -16.60348 -16.49088 -16.22127 -15.64194 -15.23715 -15.06373 -14.94647 -14.64356 -14.30655 -13.92778 -13.78258 -13.67477 -13.32781 -13.23561 -13.20645 -13.09744 -13.04404 -12.96461 -12.84725 -12.78599 -12.59392 -12.31191 -12.22542 -11.91700 -11.59603 -11.56733 -11.46670 -11.38554 -11.30735 -11.14155 -10.83450 -10.45443 -9.85703 -9.56527 -8.73829 -6.45526 -0.51873 0.39876 0.84562 1.37190 1.46071 1.49558 2.09298 2.16982 2.54818 2.76099 3.17753 3.39671 3.48751 3.54971 3.65359 3.74410 4.23458 4.25666 4.31210 4.39174 4.42796 4.44732 4.48975 4.55999 4.64039 4.80150 4.84180 4.87801 4.90181 4.98495 5.01790 5.04917 5.06505 5.19737 5.21133 5.27644 5.31726 5.37971 5.40598 5.53519 5.56031 5.88661 5.93517 6.01010 6.10233 6.52168 6.78419 6.79352 6.84273 8.23747 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.003709 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.376044 B = 7546.816893 C = 8409.360371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.080 4.080 3 H 0.085 0.915 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.158 4.158 7 C 0.133 3.867 8 O -0.562 6.562 9 C 0.088 3.912 10 N -1.105 6.105 11 S 2.722 3.278 12 O -0.994 6.994 13 O -0.985 6.985 14 C -0.638 4.638 15 C -0.148 4.148 16 C -0.121 4.121 17 C -0.141 4.141 18 C 0.064 3.936 19 C -0.499 4.499 20 H 0.078 0.922 21 C 0.040 3.960 22 N -0.819 5.819 23 Si 0.980 3.020 24 H -0.262 1.262 25 H -0.265 1.265 26 H -0.260 1.260 27 C -0.145 4.145 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.384 0.616 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.423 0.577 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.292 0.708 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.842 9.714 -7.084 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.196 4.196 7 C 0.090 3.910 8 O -0.370 6.370 9 C -0.038 4.038 10 N -0.868 5.868 11 S 2.815 3.185 12 O -0.984 6.984 13 O -0.975 6.975 14 C -0.727 4.727 15 C -0.169 4.169 16 C -0.140 4.140 17 C -0.160 4.160 18 C 0.060 3.940 19 C -0.528 4.528 20 H 0.096 0.904 21 C -0.176 4.176 22 N -0.445 5.445 23 Si 0.801 3.199 24 H -0.187 1.187 25 H -0.189 1.189 26 H -0.184 1.184 27 C -0.166 4.166 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.233 0.767 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.260 0.740 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.453 10.476 -6.916 14.599 hybrid contribution -0.144 -1.981 0.165 1.994 sum 7.309 8.495 -6.751 13.083 Atomic orbital electron populations 1.22080 0.94120 1.02582 1.02887 1.21728 0.95978 1.00141 0.92095 0.89625 1.22481 0.97412 0.99187 0.96594 1.22425 0.97925 1.00228 0.95009 1.23141 1.00291 0.97637 0.98484 1.22114 0.88407 0.89994 0.90441 1.86523 1.66943 1.41528 1.41980 1.22444 0.98089 0.96082 0.87152 1.55197 1.24396 1.71120 1.36073 1.00710 0.72734 0.72653 0.72435 1.93508 1.70401 1.73454 1.61065 1.93501 1.76345 1.45371 1.82317 1.30208 1.15466 1.08821 1.18160 1.20451 0.93926 0.99010 1.03481 1.21131 0.99152 0.93541 1.00180 1.21640 0.97313 0.94654 1.02434 1.18022 0.91188 0.93948 0.90797 1.19835 1.24185 0.91742 1.17047 0.90393 1.26694 0.92206 1.05968 0.92688 1.69800 1.26196 1.40375 1.08114 0.85270 0.79708 0.75723 0.79208 1.18684 1.18877 1.18373 1.20847 0.98959 0.91570 1.05205 0.92194 0.92258 0.90737 0.90045 0.91131 0.90746 0.90899 0.90907 0.89848 0.76655 0.89594 0.90247 0.73975 0.85129 0.85561 0.86936 0.89706 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.89 71.98 0.57 -2.42 16 2 C -0.08 -1.51 3.32 -10.00 -0.03 -1.54 16 3 H 0.09 1.65 7.96 -2.39 -0.02 1.63 16 4 C -0.12 -1.94 6.35 31.67 0.20 -1.74 16 5 C -0.12 -1.94 6.91 31.88 0.22 -1.72 16 6 C -0.16 -2.95 5.28 31.67 0.17 -2.78 16 7 C 0.13 2.73 1.05 -10.00 -0.01 2.72 16 8 O -0.56 -11.87 12.91 -148.98 -1.92 -13.79 16 9 C 0.09 2.16 4.04 86.38 0.35 2.51 16 10 N -1.11 -28.79 5.47 -187.47 -1.03 -29.81 16 11 S 2.72 96.33 5.73 -56.49 -0.32 96.00 16 12 O -0.99 -40.03 17.27 -128.00 -2.21 -42.24 16 13 O -0.99 -37.92 16.73 -128.00 -2.14 -40.06 16 14 C -0.64 -26.92 5.94 22.22 0.13 -26.79 16 15 C -0.15 -6.08 9.53 22.46 0.21 -5.87 16 16 C -0.12 -5.23 10.02 22.22 0.22 -5.01 16 17 C -0.14 -7.00 8.70 22.73 0.20 -6.80 16 18 C 0.06 3.32 5.57 -21.29 -0.12 3.20 16 19 C -0.50 -26.03 9.05 23.46 0.21 -25.82 16 20 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 21 C 0.04 1.94 5.14 85.26 0.44 2.38 16 22 N -0.82 -40.24 10.95 21.83 0.24 -40.00 16 23 Si 0.98 36.53 29.60 68.60 2.03 38.56 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 25 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 26 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 27 C -0.14 -6.95 9.26 22.73 0.21 -6.74 16 28 H 0.06 1.20 6.62 -2.39 -0.02 1.19 16 29 H 0.06 1.16 6.87 -2.39 -0.02 1.14 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.18 7.85 -2.39 -0.02 1.16 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.53 7.85 -2.39 -0.02 1.51 16 36 H 0.08 1.35 8.05 -2.39 -0.02 1.33 16 37 H 0.38 6.19 8.22 -74.06 -0.61 5.58 16 38 H 0.09 2.19 6.49 -2.38 -0.02 2.17 16 39 H 0.08 2.02 6.61 -2.39 -0.02 2.01 16 40 H 0.42 8.77 7.62 -96.75 -0.74 8.03 16 41 H 0.13 4.67 7.59 -2.91 -0.02 4.65 16 42 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.11 5.76 6.16 -2.91 -0.02 5.75 16 44 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 45 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -64.89 370.37 -2.70 -67.59 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -0.32 Total: 40.14 kcal Atomic # 6 Polarization: -79.37 SS G_CDS: 2.97 Total: -76.40 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -0.79 Total: -69.81 kcal Atomic # 8 Polarization: -89.82 SS G_CDS: -6.27 Total: -96.09 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Atomic # 16 Polarization: 96.33 SS G_CDS: -0.32 Total: 96.00 kcal Total: -64.89 -2.70 -67.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590175565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.029 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds