Wall clock time and date at job start Tue Mar 31 2020 23:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.05895 * 2 1 4 4 C 1.54266 * 110.02884 * 238.57948 * 2 1 3 5 5 C 1.54892 * 104.19703 * 264.32438 * 4 2 1 6 6 C 1.54886 * 102.74773 * 322.06336 * 5 4 2 7 7 C 1.53882 * 110.03295 * 121.41773 * 2 1 3 8 8 O 1.42906 * 110.06846 * 359.97130 * 7 2 1 9 9 C 1.53004 * 110.02820 * 238.57073 * 7 2 1 10 10 N 1.46500 * 109.46708 * 186.37935 * 9 7 2 11 11 S 1.65604 * 120.00002 * 164.99587 * 10 9 7 12 12 O 1.42102 * 106.40141 * 311.46014 * 11 10 9 13 13 O 1.42093 * 106.40081 * 178.53771 * 11 10 9 14 14 C 1.76204 * 107.21459 * 64.99683 * 11 10 9 15 15 C 1.38653 * 119.87828 * 269.72296 * 14 11 10 16 16 C 1.38613 * 120.50460 * 180.28151 * 15 14 11 17 17 C 1.37636 * 120.24599 * 359.97438 * 16 15 14 18 18 C 1.40703 * 119.74597 * 0.02562 * 17 16 15 19 19 C 1.41392 * 120.24538 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00340 * 150.20964 * 19 18 17 21 21 C 1.39947 * 120.00040 * 330.20724 * 19 18 17 22 22 N 1.30824 * 120.00660 * 161.73627 * 21 19 18 23 23 Si 1.86805 * 119.99658 * 341.73475 * 21 19 18 24 24 H 1.48506 * 109.46935 * 95.41330 * 23 21 19 25 25 H 1.48503 * 109.46912 * 215.40975 * 23 21 19 26 26 H 1.48497 * 109.47560 * 335.41065 * 23 21 19 27 27 C 1.37595 * 119.87237 * 90.00126 * 14 11 10 28 28 H 1.09007 * 109.47114 * 298.58247 * 1 2 3 29 29 H 1.08997 * 109.47176 * 58.58240 * 1 2 3 30 30 H 1.08999 * 109.47291 * 178.59058 * 1 2 3 31 31 H 1.09005 * 110.48191 * 145.64994 * 4 2 1 32 32 H 1.08997 * 110.48789 * 23.00677 * 4 2 1 33 33 H 1.08996 * 110.75775 * 203.74554 * 5 4 2 34 34 H 1.09005 * 110.75285 * 80.37363 * 5 4 2 35 35 H 1.09006 * 110.48345 * 279.25832 * 6 5 4 36 36 H 1.08999 * 110.48538 * 156.62541 * 6 5 4 37 37 H 0.96703 * 113.99370 * 179.28791 * 8 7 2 38 38 H 1.08995 * 109.47503 * 66.38080 * 9 7 2 39 39 H 1.08996 * 109.46572 * 306.37279 * 9 7 2 40 40 H 0.97005 * 119.99981 * 344.99198 * 10 9 7 41 41 H 1.08002 * 119.74667 * 0.28328 * 15 14 11 42 42 H 1.07996 * 119.87700 * 179.97438 * 16 15 14 43 43 H 1.08002 * 120.12887 * 179.97438 * 17 16 15 44 44 H 0.96987 * 120.00357 * 179.97438 * 22 21 19 45 45 H 1.08005 * 120.13170 * 359.74602 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 2.3280 -2.1903 -0.7190 6 6 2.8873 -1.9407 0.7036 7 6 2.0571 -0.7536 1.2338 8 8 0.9641 -1.2329 2.0197 9 6 2.9409 0.1704 2.0741 10 7 3.5574 -0.5974 3.1589 11 16 4.8379 0.0352 3.9972 12 8 5.7590 0.5096 3.0247 13 8 5.1799 -0.9223 4.9898 14 6 4.2476 1.4550 4.8577 15 6 4.3000 2.7011 4.2520 16 6 3.8446 3.8275 4.9192 17 6 3.3340 3.7198 6.1928 18 6 3.2758 2.4603 6.8174 19 6 2.7528 2.3374 8.1253 20 1 2.2647 1.4228 8.4279 21 6 2.8677 3.4009 9.0276 22 7 2.0997 3.4470 10.0857 23 14 4.1178 4.7548 8.7212 24 1 3.4578 5.8903 8.0282 25 1 4.6709 5.2205 10.0183 26 1 5.2184 4.2298 7.8738 27 6 3.7415 1.3237 6.1304 28 1 -0.3634 0.4917 0.9025 29 1 -0.3633 0.5357 -0.8770 30 1 -0.3634 -1.0273 -0.0253 31 1 2.9811 -0.3002 -1.5966 32 1 1.3060 -0.7697 -2.0254 33 1 3.0674 -2.6932 -1.3421 34 1 1.4030 -2.7652 -0.6750 35 1 3.9439 -1.6767 0.6571 36 1 2.7401 -2.8197 1.3310 37 1 1.2323 -1.7265 2.8068 38 1 2.3326 0.9706 2.4956 39 1 3.7201 0.5994 1.4443 40 1 3.2155 -1.4763 3.3862 41 1 4.6988 2.7948 3.2526 42 1 3.8906 4.7932 4.4380 43 1 2.9800 4.5987 6.7111 44 1 2.1796 4.1838 10.7113 45 1 3.7019 0.3522 6.6006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590175566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:28 Heat of formation + Delta-G solvation = -124.113769 kcal Electronic energy + Delta-G solvation = -28039.530646 eV Core-core repulsion = 24147.699003 eV Total energy + Delta-G solvation = -3891.831643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.97252 -37.96414 -36.83268 -35.49244 -35.45079 -34.37736 -33.81697 -31.25161 -30.76850 -30.21068 -28.75680 -26.15442 -25.42851 -23.65758 -22.43918 -21.08633 -20.94377 -19.83812 -19.16921 -18.13152 -17.55031 -16.57164 -16.32446 -16.27238 -15.62413 -15.38970 -15.26459 -14.87247 -14.45447 -14.12487 -13.81820 -13.61509 -13.23451 -13.13469 -12.91287 -12.76944 -12.56984 -12.31017 -12.20827 -12.00998 -11.90381 -11.75096 -11.68648 -11.53175 -11.43773 -11.19624 -11.07968 -10.83157 -10.79290 -10.75340 -10.56179 -10.39147 -10.07801 -10.04190 -9.82722 -9.48749 -9.22280 -8.32446 -7.92143 -7.12051 -4.67796 0.82322 1.85946 2.37524 2.96675 3.08994 3.17823 3.34350 3.82490 3.96085 4.03691 4.23931 4.28237 4.36146 4.49993 4.82905 4.93239 5.09551 5.11149 5.14931 5.18961 5.35758 5.37564 5.39851 5.60817 5.66711 5.73022 5.76186 5.77089 5.78592 5.89670 5.95750 6.00086 6.09425 6.11294 6.16154 6.34075 6.41184 6.52494 6.82304 6.92987 7.05396 7.14997 7.34635 7.52326 7.57831 7.73350 8.14465 8.38402 8.57858 9.89777 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.003268 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.465566 B = 8564.965698 C = 9022.355048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 H 0.082 0.918 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.151 4.151 7 C 0.130 3.870 8 O -0.546 6.546 9 C 0.095 3.905 10 N -1.120 6.120 11 S 2.691 3.309 12 O -0.971 6.971 13 O -0.968 6.968 14 C -0.625 4.625 15 C -0.159 4.159 16 C -0.092 4.092 17 C -0.197 4.197 18 C 0.074 3.926 19 C -0.443 4.443 20 H 0.096 0.904 21 C 0.084 3.916 22 N -0.799 5.799 23 Si 0.906 3.094 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.243 1.243 27 C -0.102 4.102 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.373 0.627 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.410 0.590 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.288 0.712 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 -6.481 -17.599 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.102 4.102 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.158 4.158 6 C -0.189 4.189 7 C 0.087 3.913 8 O -0.352 6.352 9 C -0.031 4.031 10 N -0.879 5.879 11 S 2.786 3.214 12 O -0.961 6.961 13 O -0.958 6.958 14 C -0.716 4.716 15 C -0.180 4.180 16 C -0.111 4.111 17 C -0.217 4.217 18 C 0.070 3.930 19 C -0.471 4.471 20 H 0.114 0.886 21 C -0.136 4.136 22 N -0.422 5.422 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.166 1.166 27 C -0.123 4.123 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.221 0.779 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.244 0.756 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.059 -6.280 -17.850 18.952 hybrid contribution 0.112 0.667 1.010 1.216 sum -0.947 -5.613 -16.840 17.776 Atomic orbital electron populations 1.21519 0.93623 1.02195 1.01247 1.21755 0.97464 0.99009 0.92021 0.89938 1.22475 1.01040 0.95483 0.96944 1.22435 1.00838 0.96862 0.95674 1.23086 1.00403 0.98080 0.97346 1.22006 0.85849 0.92720 0.90696 1.86616 1.32891 1.75228 1.40468 1.22080 0.97500 0.94687 0.88876 1.55550 1.54842 1.29267 1.48219 1.01675 0.72754 0.73968 0.72996 1.93522 1.59478 1.82060 1.61004 1.93559 1.81747 1.60950 1.59565 1.29906 1.18424 1.15283 1.08001 1.20054 1.06871 0.91429 0.99688 1.20702 0.98284 0.97036 0.95058 1.21314 1.07045 0.97779 0.95551 1.17787 0.90338 0.91109 0.93811 1.19523 1.31057 1.01800 0.94694 0.88649 1.26163 0.95079 0.98136 0.94241 1.69671 1.31238 1.30666 1.10650 0.86377 0.82273 0.80190 0.77966 1.19391 1.21273 1.16643 1.20840 0.99222 0.99323 0.92920 0.91998 0.93383 0.92257 0.91287 0.91178 0.91560 0.91287 0.90198 0.90971 0.77919 0.90277 0.89434 0.75612 0.87100 0.87878 0.87597 0.90133 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.08 37.16 0.30 -0.91 16 2 C -0.08 -0.76 3.16 -89.50 -0.28 -1.05 16 3 H 0.08 0.73 7.67 -51.93 -0.40 0.33 16 4 C -0.12 -0.95 6.37 -25.07 -0.16 -1.11 16 5 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 6 C -0.15 -1.33 5.45 -25.08 -0.14 -1.47 16 7 C 0.13 1.27 1.02 -89.50 -0.09 1.18 16 8 O -0.55 -5.59 11.13 -35.23 -0.39 -5.99 16 9 C 0.10 1.09 5.02 -4.04 -0.02 1.07 16 10 N -1.12 -13.79 5.51 -10.61 -0.06 -13.85 16 11 S 2.69 45.76 5.74 -107.50 -0.62 45.14 16 12 O -0.97 -18.12 16.73 -57.17 -0.96 -19.08 16 13 O -0.97 -18.88 17.27 -57.17 -0.99 -19.87 16 14 C -0.62 -12.56 5.94 -39.66 -0.24 -12.80 16 15 C -0.16 -3.15 9.53 -39.29 -0.37 -3.53 16 16 C -0.09 -1.88 10.02 -39.66 -0.40 -2.27 16 17 C -0.20 -4.53 7.18 -38.87 -0.28 -4.81 16 18 C 0.07 1.80 5.10 -106.82 -0.55 1.25 16 19 C -0.44 -11.53 9.57 -37.74 -0.36 -11.89 16 20 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 22 N -0.80 -20.53 13.93 55.55 0.77 -19.76 16 23 Si 0.91 20.01 24.52 -169.99 -4.17 15.84 16 24 H -0.27 -5.66 6.71 56.52 0.38 -5.28 16 25 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.24 -5.56 6.86 56.52 0.39 -5.17 16 27 C -0.10 -2.30 9.26 -38.87 -0.36 -2.66 16 28 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.50 7.84 -51.93 -0.41 0.09 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.74 7.86 -51.93 -0.41 0.34 16 36 H 0.07 0.57 8.05 -51.93 -0.42 0.16 16 37 H 0.37 2.95 7.96 45.56 0.36 3.31 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 0.99 7.75 -51.93 -0.40 0.58 16 40 H 0.41 4.00 7.45 -34.48 -0.26 3.74 16 41 H 0.11 1.94 7.60 -52.49 -0.40 1.54 16 42 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.11 2.39 4.73 -52.49 -0.25 2.15 16 44 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 45 H 0.12 2.57 7.61 -52.48 -0.40 2.17 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -30.77 368.89 -9.98 -40.75 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.92 Total: 9.33 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: -3.21 Total: -38.09 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.72 Total: -33.61 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -2.34 Total: -44.93 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.17 Total: 15.84 kcal Atomic # 16 Polarization: 45.76 SS G_CDS: -0.62 Total: 45.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.77 -9.98 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590175566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.368 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds