Wall clock time and date at job start Tue Mar 31 2020 23:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.05895 * 2 1 4 4 C 1.54266 * 110.02884 * 238.57948 * 2 1 3 5 5 C 1.54892 * 104.19703 * 264.32438 * 4 2 1 6 6 C 1.54886 * 102.74773 * 322.06336 * 5 4 2 7 7 C 1.53882 * 110.03295 * 121.41773 * 2 1 3 8 8 O 1.42906 * 110.06846 * 359.97130 * 7 2 1 9 9 C 1.53004 * 110.02820 * 238.57073 * 7 2 1 10 10 N 1.46500 * 109.46708 * 186.37935 * 9 7 2 11 11 S 1.65604 * 120.00002 * 164.99587 * 10 9 7 12 12 O 1.42102 * 106.40141 * 311.46014 * 11 10 9 13 13 O 1.42093 * 106.40081 * 178.53771 * 11 10 9 14 14 C 1.76204 * 107.21459 * 64.99683 * 11 10 9 15 15 C 1.38653 * 119.87828 * 269.72296 * 14 11 10 16 16 C 1.38613 * 120.50460 * 180.28151 * 15 14 11 17 17 C 1.37636 * 120.24599 * 359.97438 * 16 15 14 18 18 C 1.40703 * 119.74597 * 0.02562 * 17 16 15 19 19 C 1.41392 * 120.24538 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00340 * 150.20964 * 19 18 17 21 21 C 1.39947 * 120.00040 * 330.20724 * 19 18 17 22 22 N 1.30824 * 120.00660 * 161.73627 * 21 19 18 23 23 Si 1.86805 * 119.99658 * 341.73475 * 21 19 18 24 24 H 1.48506 * 109.46935 * 95.41330 * 23 21 19 25 25 H 1.48503 * 109.46912 * 215.40975 * 23 21 19 26 26 H 1.48497 * 109.47560 * 335.41065 * 23 21 19 27 27 C 1.37595 * 119.87237 * 90.00126 * 14 11 10 28 28 H 1.09007 * 109.47114 * 298.58247 * 1 2 3 29 29 H 1.08997 * 109.47176 * 58.58240 * 1 2 3 30 30 H 1.08999 * 109.47291 * 178.59058 * 1 2 3 31 31 H 1.09005 * 110.48191 * 145.64994 * 4 2 1 32 32 H 1.08997 * 110.48789 * 23.00677 * 4 2 1 33 33 H 1.08996 * 110.75775 * 203.74554 * 5 4 2 34 34 H 1.09005 * 110.75285 * 80.37363 * 5 4 2 35 35 H 1.09006 * 110.48345 * 279.25832 * 6 5 4 36 36 H 1.08999 * 110.48538 * 156.62541 * 6 5 4 37 37 H 0.96703 * 113.99370 * 179.28791 * 8 7 2 38 38 H 1.08995 * 109.47503 * 66.38080 * 9 7 2 39 39 H 1.08996 * 109.46572 * 306.37279 * 9 7 2 40 40 H 0.97005 * 119.99981 * 344.99198 * 10 9 7 41 41 H 1.08002 * 119.74667 * 0.28328 * 15 14 11 42 42 H 1.07996 * 119.87700 * 179.97438 * 16 15 14 43 43 H 1.08002 * 120.12887 * 179.97438 * 17 16 15 44 44 H 0.96987 * 120.00357 * 179.97438 * 22 21 19 45 45 H 1.08005 * 120.13170 * 359.74602 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 2.3280 -2.1903 -0.7190 6 6 2.8873 -1.9407 0.7036 7 6 2.0571 -0.7536 1.2338 8 8 0.9641 -1.2329 2.0197 9 6 2.9409 0.1704 2.0741 10 7 3.5574 -0.5974 3.1589 11 16 4.8379 0.0352 3.9972 12 8 5.7590 0.5096 3.0247 13 8 5.1799 -0.9223 4.9898 14 6 4.2476 1.4550 4.8577 15 6 4.3000 2.7011 4.2520 16 6 3.8446 3.8275 4.9192 17 6 3.3340 3.7198 6.1928 18 6 3.2758 2.4603 6.8174 19 6 2.7528 2.3374 8.1253 20 1 2.2647 1.4228 8.4279 21 6 2.8677 3.4009 9.0276 22 7 2.0997 3.4470 10.0857 23 14 4.1178 4.7548 8.7212 24 1 3.4578 5.8903 8.0282 25 1 4.6709 5.2205 10.0183 26 1 5.2184 4.2298 7.8738 27 6 3.7415 1.3237 6.1304 28 1 -0.3634 0.4917 0.9025 29 1 -0.3633 0.5357 -0.8770 30 1 -0.3634 -1.0273 -0.0253 31 1 2.9811 -0.3002 -1.5966 32 1 1.3060 -0.7697 -2.0254 33 1 3.0674 -2.6932 -1.3421 34 1 1.4030 -2.7652 -0.6750 35 1 3.9439 -1.6767 0.6571 36 1 2.7401 -2.8197 1.3310 37 1 1.2323 -1.7265 2.8068 38 1 2.3326 0.9706 2.4956 39 1 3.7201 0.5994 1.4443 40 1 3.2155 -1.4763 3.3862 41 1 4.6988 2.7948 3.2526 42 1 3.8906 4.7932 4.4380 43 1 2.9800 4.5987 6.7111 44 1 2.1796 4.1838 10.7113 45 1 3.7019 0.3522 6.6006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590175566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:27 Heat of formation + Delta-G solvation = -146.744905 kcal Electronic energy + Delta-G solvation = -28040.512005 eV Core-core repulsion = 24147.699003 eV Total energy + Delta-G solvation = -3892.813002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.72629 -39.69851 -38.31640 -36.96204 -36.27509 -35.65720 -35.33251 -32.55861 -31.94631 -31.89497 -29.59995 -27.26952 -26.86261 -24.48494 -24.11127 -22.70217 -21.77805 -20.88270 -20.29386 -19.67206 -18.79002 -18.09778 -17.69294 -17.09116 -16.99043 -16.69483 -16.42795 -16.32057 -15.74898 -15.37348 -14.97624 -14.83834 -14.69914 -14.36146 -14.05734 -13.88627 -13.60516 -13.50486 -13.41300 -13.31498 -13.25662 -13.21750 -13.11347 -12.94729 -12.87554 -12.56208 -12.12917 -12.05914 -11.82984 -11.81127 -11.59160 -11.46490 -11.41750 -11.27977 -11.10972 -10.86957 -10.46442 -10.01947 -9.70370 -8.98567 -6.61301 -0.58087 0.16378 0.63411 1.19299 1.34368 1.41409 1.99977 2.05500 2.39677 2.71930 3.23935 3.28019 3.37835 3.57152 3.66795 3.75275 4.15609 4.24633 4.31601 4.35356 4.38578 4.42379 4.45848 4.48947 4.67082 4.72019 4.74401 4.79289 4.85264 4.92289 5.02862 5.05271 5.09804 5.11485 5.21462 5.29965 5.32081 5.39132 5.41587 5.46856 5.61208 5.61681 5.74682 5.97067 5.99520 6.22683 6.56299 6.68005 6.83686 8.09710 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.003268 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.465566 B = 8564.965698 C = 9022.355048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 H 0.086 0.914 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.153 4.153 7 C 0.132 3.868 8 O -0.558 6.558 9 C 0.089 3.911 10 N -1.102 6.102 11 S 2.722 3.278 12 O -0.978 6.978 13 O -0.993 6.993 14 C -0.634 4.634 15 C -0.143 4.143 16 C -0.096 4.096 17 C -0.206 4.206 18 C 0.055 3.945 19 C -0.484 4.484 20 H 0.062 0.938 21 C 0.049 3.951 22 N -0.841 5.841 23 Si 0.956 3.044 24 H -0.248 1.248 25 H -0.274 1.274 26 H -0.256 1.256 27 C -0.122 4.122 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.381 0.619 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.424 0.576 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.108 0.892 44 H 0.296 0.704 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -5.834 -20.915 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.108 4.108 3 H 0.104 0.896 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.191 4.191 7 C 0.090 3.910 8 O -0.365 6.365 9 C -0.037 4.037 10 N -0.865 5.865 11 S 2.813 3.187 12 O -0.968 6.968 13 O -0.983 6.983 14 C -0.722 4.722 15 C -0.163 4.163 16 C -0.115 4.115 17 C -0.225 4.225 18 C 0.051 3.949 19 C -0.513 4.513 20 H 0.080 0.920 21 C -0.166 4.166 22 N -0.467 5.467 23 Si 0.778 3.222 24 H -0.173 1.173 25 H -0.200 1.200 26 H -0.180 1.180 27 C -0.143 4.143 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.230 0.770 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.261 0.739 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.015 -5.617 -21.142 21.876 hybrid contribution -0.212 0.349 1.771 1.817 sum -0.228 -5.268 -19.371 20.076 Atomic orbital electron populations 1.21469 0.93990 1.01766 1.00949 1.21845 0.97159 0.99439 0.92364 0.89551 1.22479 1.01576 0.95142 0.96452 1.22437 1.00987 0.97031 0.95195 1.23111 1.00028 0.97853 0.98133 1.22037 0.85559 0.92900 0.90516 1.86612 1.33433 1.75404 1.41061 1.22291 0.97889 0.94932 0.88592 1.55136 1.54084 1.29705 1.47559 1.00801 0.72950 0.72641 0.72264 1.93511 1.60334 1.82207 1.60781 1.93527 1.82652 1.61183 1.60954 1.30459 1.16913 1.17462 1.07370 1.20624 1.04098 0.90896 1.00677 1.21173 0.97021 0.99225 0.94046 1.21511 1.07122 0.97117 0.96754 1.17945 0.90817 0.92665 0.93463 1.19494 1.33856 1.01463 0.96506 0.92005 1.26795 0.96196 0.99795 0.93852 1.69697 1.32919 1.32166 1.11896 0.85631 0.79838 0.78390 0.78300 1.17290 1.20002 1.17973 1.20892 1.00355 0.98848 0.94201 0.93730 0.92129 0.92818 0.90554 0.90332 0.90507 0.91514 0.90403 0.90249 0.76953 0.91004 0.88582 0.73896 0.83806 0.83880 0.87421 0.89305 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.08 71.98 0.58 -1.56 16 2 C -0.09 -1.42 3.16 -10.07 -0.03 -1.45 16 3 H 0.09 1.31 7.67 -2.39 -0.02 1.29 16 4 C -0.12 -1.52 6.37 31.67 0.20 -1.32 16 5 C -0.12 -1.56 6.91 31.89 0.22 -1.34 16 6 C -0.15 -2.30 5.45 31.66 0.17 -2.13 16 7 C 0.13 2.30 1.02 -10.07 -0.01 2.29 16 8 O -0.56 -10.58 11.13 -148.98 -1.66 -12.24 16 9 C 0.09 1.82 5.02 86.38 0.43 2.25 16 10 N -1.10 -24.78 5.51 -187.49 -1.03 -25.81 16 11 S 2.72 87.21 5.74 -56.49 -0.32 86.88 16 12 O -0.98 -33.50 16.73 -128.00 -2.14 -35.64 16 13 O -0.99 -37.77 17.27 -128.00 -2.21 -39.98 16 14 C -0.63 -24.50 5.94 22.22 0.13 -24.37 16 15 C -0.14 -5.16 9.53 22.46 0.21 -4.95 16 16 C -0.10 -3.62 10.02 22.22 0.22 -3.40 16 17 C -0.21 -9.23 7.18 22.73 0.16 -9.06 16 18 C 0.05 2.72 5.10 -21.29 -0.11 2.61 16 19 C -0.48 -26.67 9.57 23.46 0.22 -26.44 16 20 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 21 C 0.05 2.58 5.40 85.26 0.46 3.05 16 22 N -0.84 -45.13 13.93 21.83 0.30 -44.82 16 23 Si 0.96 41.26 24.52 68.60 1.68 42.94 16 24 H -0.25 -9.81 6.71 99.48 0.67 -9.14 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.26 -11.42 6.86 99.48 0.68 -10.74 16 27 C -0.12 -5.57 9.26 22.73 0.21 -5.36 16 28 H 0.04 0.91 7.87 -2.38 -0.02 0.89 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.97 7.87 -2.39 -0.02 0.95 16 31 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 0.88 7.84 -2.39 -0.02 0.86 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.08 1.22 7.86 -2.38 -0.02 1.20 16 36 H 0.08 1.07 8.05 -2.39 -0.02 1.05 16 37 H 0.38 5.48 7.96 -74.06 -0.59 4.89 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 1.84 7.75 -2.39 -0.02 1.82 16 40 H 0.42 7.44 7.45 -96.74 -0.72 6.71 16 41 H 0.14 4.30 7.60 -2.91 -0.02 4.28 16 42 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.11 4.74 4.73 -2.91 -0.01 4.72 16 44 H 0.30 14.20 8.30 -92.72 -0.77 13.43 16 45 H 0.11 5.18 7.61 -2.91 -0.02 5.15 16 Total: -1.00 -67.40 368.89 -2.65 -70.05 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.36 Total: 29.82 kcal Atomic # 6 Polarization: -74.28 SS G_CDS: 3.09 Total: -71.19 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -0.73 Total: -70.64 kcal Atomic # 8 Polarization: -81.85 SS G_CDS: -6.01 Total: -87.86 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.68 Total: 42.94 kcal Atomic # 16 Polarization: 87.21 SS G_CDS: -0.32 Total: 86.88 kcal Total: -67.40 -2.65 -70.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590175566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.699 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds