Wall clock time and date at job start Tue Mar 31 2020 23:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.02165 * 2 1 4 4 C 1.54276 * 110.03392 * 121.39312 * 2 1 3 5 5 C 1.54883 * 104.19623 * 142.89223 * 4 2 1 6 6 C 1.54890 * 102.75087 * 322.05986 * 5 4 2 7 7 C 1.53873 * 110.03403 * 238.55600 * 2 1 3 8 8 O 1.42908 * 110.03028 * 121.43092 * 7 2 1 9 9 C 1.52997 * 110.03453 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47540 * 184.99480 * 9 7 2 11 11 S 1.65599 * 119.99890 * 164.99642 * 10 9 7 12 12 O 1.42098 * 106.40105 * 178.54413 * 11 10 9 13 13 O 1.42100 * 106.40672 * 311.46375 * 11 10 9 14 14 C 1.76202 * 107.21992 * 65.00511 * 11 10 9 15 15 C 1.38654 * 119.87675 * 89.99536 * 14 11 10 16 16 C 1.38609 * 120.50156 * 179.97438 * 15 14 11 17 17 C 1.37635 * 120.24858 * 359.97438 * 16 15 14 18 18 C 1.40699 * 119.74388 * 0.02562 * 17 16 15 19 19 C 1.41396 * 120.24215 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00093 * 204.37994 * 19 18 17 21 21 C 1.39951 * 120.00394 * 24.37775 * 19 18 17 22 22 N 1.30821 * 119.99532 * 17.86691 * 21 19 18 23 23 Si 1.86799 * 120.00290 * 197.86286 * 21 19 18 24 24 H 1.48504 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46823 * 120.00091 * 23 21 19 26 26 H 1.48494 * 109.47161 * 239.99960 * 23 21 19 27 27 C 1.37591 * 119.87312 * 269.72558 * 14 11 10 28 28 H 1.09001 * 109.46806 * 300.06105 * 1 2 3 29 29 H 1.09000 * 109.46401 * 60.06238 * 1 2 3 30 30 H 1.08999 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.09000 * 110.48424 * 261.57642 * 4 2 1 32 32 H 1.08998 * 110.47924 * 24.21575 * 4 2 1 33 33 H 1.09002 * 110.75640 * 80.37571 * 5 4 2 34 34 H 1.08996 * 110.75494 * 203.74157 * 5 4 2 35 35 H 1.08996 * 110.48504 * 279.26384 * 6 5 4 36 36 H 1.09000 * 110.59361 * 156.67776 * 6 5 4 37 37 H 0.96700 * 113.99583 * 179.97438 * 8 7 2 38 38 H 1.09005 * 109.46705 * 305.00167 * 9 7 2 39 39 H 1.09001 * 109.47288 * 64.99525 * 9 7 2 40 40 H 0.96994 * 119.99887 * 345.00519 * 10 9 7 41 41 H 1.08004 * 119.74868 * 0.02562 * 15 14 11 42 42 H 1.08004 * 119.87616 * 180.02562 * 16 15 14 43 43 H 1.08007 * 120.12821 * 179.97438 * 17 16 15 44 44 H 0.97005 * 120.00007 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.13255 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0585 -0.7550 1.2372 5 6 3.3136 -1.5005 0.7198 6 6 2.8874 -1.9410 -0.7027 7 6 2.0571 -0.7541 -1.2333 8 8 2.8826 0.1085 -2.0187 9 6 0.8863 -1.2673 -2.0739 10 7 1.3981 -2.0832 -3.1777 11 16 0.3709 -3.0671 -4.0257 12 8 1.1533 -3.6886 -5.0360 13 8 -0.3739 -3.7970 -3.0604 14 6 -0.7805 -2.0251 -4.8585 15 6 -0.4971 -1.5645 -6.1352 16 6 -1.3938 -0.7447 -6.8025 17 6 -2.5776 -0.3792 -6.2029 18 6 -2.8756 -0.8406 -4.9076 19 6 -4.0889 -0.4721 -4.2820 20 1 -4.1629 -0.4731 -3.2045 21 6 -5.1939 -0.1061 -5.0588 22 7 -5.2380 -0.4281 -6.3260 23 14 -6.6058 0.8422 -4.2864 24 1 -6.3142 1.0815 -2.8501 25 1 -6.7667 2.1443 -4.9821 26 1 -7.8586 0.0552 -4.4132 27 6 -1.9598 -1.6762 -4.2415 28 1 -0.3633 0.5148 0.8895 29 1 -0.3632 0.5129 -0.8906 30 1 -0.3633 -1.0277 0.0005 31 1 2.3297 -0.0528 2.0255 32 1 1.3143 -1.4653 1.5972 33 1 4.1710 -0.8288 0.6755 34 1 3.5325 -2.3673 1.3433 35 1 2.2771 -2.8428 -0.6559 36 1 3.7625 -2.1058 -1.3313 37 1 3.2462 -0.3095 -2.8113 38 1 0.2285 -1.8721 -1.4496 39 1 0.3290 -0.4211 -2.4757 40 1 2.3387 -2.0473 -3.4118 41 1 0.4289 -1.8473 -6.6138 42 1 -1.1630 -0.3920 -7.7969 43 1 -3.2746 0.2600 -6.7245 44 1 -6.0037 -0.1741 -6.8647 45 1 -2.1807 -2.0400 -3.2489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590175567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:32 Heat of formation + Delta-G solvation = -123.505868 kcal Electronic energy + Delta-G solvation = -28287.520179 eV Core-core repulsion = 24395.714896 eV Total energy + Delta-G solvation = -3891.805282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.98608 -37.66497 -36.70336 -35.42654 -35.34348 -34.30962 -33.86280 -31.62662 -30.10177 -29.82050 -28.60536 -25.51069 -25.22982 -24.28984 -21.93019 -21.19140 -21.01975 -19.35724 -18.99710 -18.02966 -17.50401 -16.88044 -15.96166 -15.92792 -15.59619 -15.30571 -14.93417 -14.75529 -14.41553 -14.08430 -13.84513 -13.49394 -13.38197 -13.03389 -12.79232 -12.61385 -12.27374 -12.04326 -11.92466 -11.76717 -11.63693 -11.54662 -11.50272 -11.43191 -11.36995 -11.21265 -11.06179 -10.90361 -10.81482 -10.75570 -10.60357 -10.39964 -10.00352 -9.81286 -9.70065 -9.37387 -9.18490 -8.06430 -7.72764 -6.94361 -4.55600 0.96717 2.16773 2.60412 2.99077 3.02401 3.05368 3.49998 3.81359 3.97608 4.18854 4.32599 4.39872 4.44542 4.57670 4.94519 5.00714 5.15296 5.19076 5.32314 5.35252 5.38831 5.42292 5.53245 5.62057 5.69531 5.77156 5.83697 5.86622 5.94260 6.02873 6.06055 6.14354 6.16870 6.20084 6.30721 6.62346 6.73073 6.80812 7.00580 7.07738 7.19787 7.35517 7.55108 7.70383 7.77985 7.91796 8.37827 8.64966 8.69427 10.01280 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.003906 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.998188 B = 7166.718723 C = 8592.706202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.080 4.080 3 H 0.087 0.913 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.151 4.151 7 C 0.129 3.871 8 O -0.552 6.552 9 C 0.091 3.909 10 N -1.123 6.123 11 S 2.690 3.310 12 O -0.976 6.976 13 O -0.970 6.970 14 C -0.631 4.631 15 C -0.145 4.145 16 C -0.121 4.121 17 C -0.117 4.117 18 C 0.092 3.908 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.793 5.793 23 Si 0.911 3.089 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.128 4.128 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.373 0.627 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.407 0.593 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.125 0.875 44 H 0.283 0.717 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.824 1.865 10.075 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.099 4.099 3 H 0.106 0.894 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.189 4.189 7 C 0.087 3.913 8 O -0.358 6.358 9 C -0.035 4.035 10 N -0.881 5.881 11 S 2.786 3.214 12 O -0.966 6.966 13 O -0.960 6.960 14 C -0.723 4.723 15 C -0.167 4.167 16 C -0.141 4.141 17 C -0.136 4.136 18 C 0.088 3.912 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.418 5.418 23 Si 0.735 3.265 24 H -0.182 1.182 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.149 4.149 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.221 0.779 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.240 0.760 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.143 0.857 44 H 0.094 0.906 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.356 1.351 10.403 15.460 hybrid contribution -0.558 0.671 -0.758 1.156 sum 10.798 2.022 9.645 14.619 Atomic orbital electron populations 1.22091 0.93933 1.02849 1.02792 1.21668 0.96081 1.00267 0.91926 0.89447 1.22478 0.97428 0.99061 0.96860 1.22436 0.97886 0.99863 0.95724 1.23078 1.00048 0.98474 0.97299 1.22065 0.89040 0.89494 0.90670 1.86581 1.67723 1.41482 1.40026 1.22297 0.97097 0.95807 0.88299 1.55619 1.22007 1.63486 1.46986 1.01643 0.73258 0.73550 0.72950 1.93522 1.70291 1.74130 1.58687 1.93527 1.72029 1.69022 1.61436 1.29694 1.13245 1.21568 1.07820 1.20078 1.00091 1.02717 0.93766 1.20817 0.95328 0.99458 0.98472 1.21659 0.95190 1.00054 0.96746 1.17679 0.92303 0.89170 0.92022 1.19629 0.94781 1.39597 0.94914 0.89886 1.25941 0.99983 0.93776 0.94632 1.69789 1.30114 1.34299 1.07597 0.86212 0.79969 0.79659 0.80682 1.18202 1.19606 1.19833 1.20737 0.94357 0.99775 1.00077 0.92091 0.91387 0.91596 0.91366 0.91005 0.91330 0.91494 0.90141 0.91058 0.77894 0.88886 0.90030 0.75995 0.87627 0.88370 0.85732 0.90581 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.88 37.16 0.29 -1.40 16 2 C -0.08 -0.83 3.31 -89.50 -0.30 -1.13 16 3 H 0.09 0.95 7.96 -51.93 -0.41 0.54 16 4 C -0.12 -1.06 6.36 -25.07 -0.16 -1.22 16 5 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 6 C -0.15 -1.46 5.53 -25.07 -0.14 -1.60 16 7 C 0.13 1.41 1.04 -89.51 -0.09 1.32 16 8 O -0.55 -6.21 12.90 -35.23 -0.45 -6.66 16 9 C 0.09 1.18 4.06 -4.04 -0.02 1.16 16 10 N -1.12 -14.90 5.53 -10.61 -0.06 -14.96 16 11 S 2.69 48.72 5.73 -107.50 -0.62 48.11 16 12 O -0.98 -19.44 17.27 -57.17 -0.99 -20.43 16 13 O -0.97 -19.84 16.73 -57.17 -0.96 -20.80 16 14 C -0.63 -13.49 5.94 -39.66 -0.24 -13.73 16 15 C -0.15 -3.13 9.53 -39.29 -0.37 -3.50 16 16 C -0.12 -2.71 10.02 -39.66 -0.40 -3.10 16 17 C -0.12 -2.87 8.70 -38.87 -0.34 -3.21 16 18 C 0.09 2.32 5.58 -106.82 -0.60 1.73 16 19 C -0.46 -11.56 9.05 -37.74 -0.34 -11.90 16 20 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 21 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 22 N -0.79 -19.60 10.95 55.55 0.61 -19.00 16 23 Si 0.91 17.79 29.60 -169.99 -5.03 12.76 16 24 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 27 C -0.13 -2.99 9.26 -38.88 -0.36 -3.35 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.79 6.97 -51.93 -0.36 0.43 16 30 H 0.07 0.70 6.52 -51.93 -0.34 0.36 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 36 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 37 H 0.37 3.15 7.87 45.56 0.36 3.51 16 38 H 0.09 1.23 6.00 -51.93 -0.31 0.92 16 39 H 0.08 1.14 7.08 -51.93 -0.37 0.77 16 40 H 0.41 4.20 7.41 -34.47 -0.26 3.95 16 41 H 0.11 2.05 7.60 -52.48 -0.40 1.66 16 42 H 0.10 1.92 8.06 -52.48 -0.42 1.49 16 43 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 44 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 45 H 0.11 2.46 7.60 -52.49 -0.40 2.07 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -30.81 370.10 -10.94 -41.75 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -5.71 Total: 13.10 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: -3.31 Total: -39.45 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.55 Total: -33.95 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -2.40 Total: -47.89 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: 48.72 SS G_CDS: -0.62 Total: 48.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.81 -10.94 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590175567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.758 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds