Wall clock time and date at job start Tue Mar 31 2020 23:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.02165 * 2 1 4 4 C 1.54276 * 110.03392 * 121.39312 * 2 1 3 5 5 C 1.54883 * 104.19623 * 142.89223 * 4 2 1 6 6 C 1.54890 * 102.75087 * 322.05986 * 5 4 2 7 7 C 1.53873 * 110.03403 * 238.55600 * 2 1 3 8 8 O 1.42908 * 110.03028 * 121.43092 * 7 2 1 9 9 C 1.52997 * 110.03453 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47540 * 184.99480 * 9 7 2 11 11 S 1.65599 * 119.99890 * 164.99642 * 10 9 7 12 12 O 1.42098 * 106.40105 * 178.54413 * 11 10 9 13 13 O 1.42100 * 106.40672 * 311.46375 * 11 10 9 14 14 C 1.76202 * 107.21992 * 65.00511 * 11 10 9 15 15 C 1.38654 * 119.87675 * 89.99536 * 14 11 10 16 16 C 1.38609 * 120.50156 * 179.97438 * 15 14 11 17 17 C 1.37635 * 120.24858 * 359.97438 * 16 15 14 18 18 C 1.40699 * 119.74388 * 0.02562 * 17 16 15 19 19 C 1.41396 * 120.24215 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00093 * 204.37994 * 19 18 17 21 21 C 1.39951 * 120.00394 * 24.37775 * 19 18 17 22 22 N 1.30821 * 119.99532 * 17.86691 * 21 19 18 23 23 Si 1.86799 * 120.00290 * 197.86286 * 21 19 18 24 24 H 1.48504 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46823 * 120.00091 * 23 21 19 26 26 H 1.48494 * 109.47161 * 239.99960 * 23 21 19 27 27 C 1.37591 * 119.87312 * 269.72558 * 14 11 10 28 28 H 1.09001 * 109.46806 * 300.06105 * 1 2 3 29 29 H 1.09000 * 109.46401 * 60.06238 * 1 2 3 30 30 H 1.08999 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.09000 * 110.48424 * 261.57642 * 4 2 1 32 32 H 1.08998 * 110.47924 * 24.21575 * 4 2 1 33 33 H 1.09002 * 110.75640 * 80.37571 * 5 4 2 34 34 H 1.08996 * 110.75494 * 203.74157 * 5 4 2 35 35 H 1.08996 * 110.48504 * 279.26384 * 6 5 4 36 36 H 1.09000 * 110.59361 * 156.67776 * 6 5 4 37 37 H 0.96700 * 113.99583 * 179.97438 * 8 7 2 38 38 H 1.09005 * 109.46705 * 305.00167 * 9 7 2 39 39 H 1.09001 * 109.47288 * 64.99525 * 9 7 2 40 40 H 0.96994 * 119.99887 * 345.00519 * 10 9 7 41 41 H 1.08004 * 119.74868 * 0.02562 * 15 14 11 42 42 H 1.08004 * 119.87616 * 180.02562 * 16 15 14 43 43 H 1.08007 * 120.12821 * 179.97438 * 17 16 15 44 44 H 0.97005 * 120.00007 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.13255 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0585 -0.7550 1.2372 5 6 3.3136 -1.5005 0.7198 6 6 2.8874 -1.9410 -0.7027 7 6 2.0571 -0.7541 -1.2333 8 8 2.8826 0.1085 -2.0187 9 6 0.8863 -1.2673 -2.0739 10 7 1.3981 -2.0832 -3.1777 11 16 0.3709 -3.0671 -4.0257 12 8 1.1533 -3.6886 -5.0360 13 8 -0.3739 -3.7970 -3.0604 14 6 -0.7805 -2.0251 -4.8585 15 6 -0.4971 -1.5645 -6.1352 16 6 -1.3938 -0.7447 -6.8025 17 6 -2.5776 -0.3792 -6.2029 18 6 -2.8756 -0.8406 -4.9076 19 6 -4.0889 -0.4721 -4.2820 20 1 -4.1629 -0.4731 -3.2045 21 6 -5.1939 -0.1061 -5.0588 22 7 -5.2380 -0.4281 -6.3260 23 14 -6.6058 0.8422 -4.2864 24 1 -6.3142 1.0815 -2.8501 25 1 -6.7667 2.1443 -4.9821 26 1 -7.8586 0.0552 -4.4132 27 6 -1.9598 -1.6762 -4.2415 28 1 -0.3633 0.5148 0.8895 29 1 -0.3632 0.5129 -0.8906 30 1 -0.3633 -1.0277 0.0005 31 1 2.3297 -0.0528 2.0255 32 1 1.3143 -1.4653 1.5972 33 1 4.1710 -0.8288 0.6755 34 1 3.5325 -2.3673 1.3433 35 1 2.2771 -2.8428 -0.6559 36 1 3.7625 -2.1058 -1.3313 37 1 3.2462 -0.3095 -2.8113 38 1 0.2285 -1.8721 -1.4496 39 1 0.3290 -0.4211 -2.4757 40 1 2.3387 -2.0473 -3.4118 41 1 0.4289 -1.8473 -6.6138 42 1 -1.1630 -0.3920 -7.7969 43 1 -3.2746 0.2600 -6.7245 44 1 -6.0037 -0.1741 -6.8647 45 1 -2.1807 -2.0400 -3.2489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590175567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:31 Heat of formation + Delta-G solvation = -145.071434 kcal Electronic energy + Delta-G solvation = -28288.455332 eV Core-core repulsion = 24395.714896 eV Total energy + Delta-G solvation = -3892.740435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.84427 -39.45212 -38.28371 -36.93721 -36.28807 -35.67791 -35.39385 -32.42220 -31.92178 -31.59808 -29.51058 -27.34923 -26.08370 -25.21640 -23.67893 -22.81190 -21.94448 -20.72170 -20.00698 -19.65778 -18.71060 -18.10263 -17.68411 -17.10502 -16.85267 -16.49502 -16.48626 -16.14776 -15.59063 -15.23777 -15.15092 -14.98786 -14.65049 -14.32890 -13.92555 -13.73169 -13.67062 -13.30159 -13.27631 -13.15902 -13.08764 -13.05373 -12.98821 -12.87108 -12.79820 -12.60322 -12.30856 -12.19025 -11.90262 -11.60026 -11.55582 -11.46052 -11.42538 -11.21514 -11.15031 -10.90802 -10.43863 -9.86110 -9.56670 -8.73570 -6.45197 -0.53217 0.39744 0.83380 1.37555 1.44543 1.52844 2.08605 2.17748 2.54027 2.76448 3.17298 3.38945 3.49921 3.57241 3.65307 3.73285 4.21916 4.28060 4.32882 4.36923 4.40943 4.43452 4.47031 4.55514 4.64620 4.81213 4.83637 4.88950 4.90469 4.98239 5.02360 5.05774 5.07302 5.20390 5.22768 5.28358 5.32695 5.38275 5.40524 5.53688 5.55410 5.88274 5.93499 6.02729 6.09814 6.52378 6.79820 6.80879 6.84325 8.24763 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.003906 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.998188 B = 7166.718723 C = 8592.706202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.082 4.082 3 H 0.082 0.918 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.153 4.153 7 C 0.134 3.866 8 O -0.562 6.562 9 C 0.088 3.912 10 N -1.101 6.101 11 S 2.723 3.277 12 O -0.988 6.988 13 O -0.991 6.991 14 C -0.640 4.640 15 C -0.149 4.149 16 C -0.124 4.124 17 C -0.142 4.142 18 C 0.063 3.937 19 C -0.495 4.495 20 H 0.082 0.918 21 C 0.036 3.964 22 N -0.825 5.825 23 Si 0.983 3.017 24 H -0.255 1.255 25 H -0.263 1.263 26 H -0.267 1.267 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.385 0.615 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.424 0.576 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.291 0.709 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.206 2.000 11.094 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.191 4.191 7 C 0.091 3.909 8 O -0.370 6.370 9 C -0.038 4.038 10 N -0.864 5.864 11 S 2.815 3.185 12 O -0.978 6.978 13 O -0.981 6.981 14 C -0.728 4.728 15 C -0.170 4.170 16 C -0.144 4.144 17 C -0.161 4.161 18 C 0.060 3.940 19 C -0.524 4.524 20 H 0.100 0.900 21 C -0.179 4.179 22 N -0.451 5.451 23 Si 0.803 3.197 24 H -0.179 1.179 25 H -0.187 1.187 26 H -0.192 1.192 27 C -0.164 4.164 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.234 0.766 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.262 0.738 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.130 0.870 44 H 0.102 0.898 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.744 1.494 11.382 17.152 hybrid contribution -0.858 0.594 -1.090 1.509 sum 11.887 2.088 10.292 15.861 Atomic orbital electron populations 1.22094 0.94521 1.02564 1.02613 1.21704 0.95619 1.00217 0.92582 0.89939 1.22489 0.97577 0.99232 0.96323 1.22440 0.97737 1.00346 0.95055 1.23109 1.00207 0.97450 0.98357 1.22063 0.88355 0.90094 0.90351 1.86571 1.67628 1.42051 1.40758 1.22421 0.98195 0.95115 0.88116 1.55124 1.22238 1.62854 1.46162 1.00697 0.72556 0.72938 0.72293 1.93500 1.70118 1.74573 1.59612 1.93501 1.73059 1.69727 1.61786 1.30247 1.13491 1.20921 1.08168 1.20461 1.00747 1.01953 0.93793 1.21142 0.94537 0.99081 0.99593 1.21659 0.96248 1.01197 0.97032 1.18040 0.93158 0.89984 0.92823 1.19896 0.95757 1.41559 0.95196 0.89950 1.26778 1.02225 0.93964 0.94964 1.69832 1.31321 1.35036 1.08866 0.85140 0.76477 0.78283 0.79774 1.17862 1.18718 1.19199 1.20830 0.95105 1.00114 1.00362 0.90822 0.93075 0.91914 0.90122 0.90753 0.91019 0.90242 0.90697 0.89689 0.76576 0.89195 0.91378 0.73843 0.85102 0.85718 0.86983 0.89797 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 7.88 71.98 0.57 -2.79 16 2 C -0.08 -1.60 3.31 -10.07 -0.03 -1.63 16 3 H 0.08 1.70 7.96 -2.39 -0.02 1.68 16 4 C -0.12 -1.83 6.36 31.67 0.20 -1.63 16 5 C -0.12 -1.73 6.91 31.88 0.22 -1.51 16 6 C -0.15 -2.61 5.53 31.67 0.17 -2.44 16 7 C 0.13 2.72 1.04 -10.07 -0.01 2.71 16 8 O -0.56 -11.62 12.90 -148.98 -1.92 -13.55 16 9 C 0.09 2.20 4.06 86.38 0.35 2.55 16 10 N -1.10 -27.53 5.53 -187.49 -1.04 -28.56 16 11 S 2.72 95.70 5.73 -56.49 -0.32 95.37 16 12 O -0.99 -37.48 17.27 -128.00 -2.21 -39.69 16 13 O -0.99 -39.93 16.73 -128.00 -2.14 -42.07 16 14 C -0.64 -27.27 5.94 22.22 0.13 -27.14 16 15 C -0.15 -6.29 9.53 22.46 0.21 -6.07 16 16 C -0.12 -5.54 10.02 22.22 0.22 -5.32 16 17 C -0.14 -7.18 8.70 22.73 0.20 -6.98 16 18 C 0.06 3.32 5.58 -21.29 -0.12 3.20 16 19 C -0.50 -25.80 9.05 23.46 0.21 -25.59 16 20 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 21 C 0.04 1.75 5.14 85.26 0.44 2.19 16 22 N -0.82 -41.80 10.95 21.83 0.24 -41.57 16 23 Si 0.98 36.81 29.60 68.60 2.03 38.84 16 24 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 25 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 26 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 27 C -0.14 -6.86 9.26 22.73 0.21 -6.65 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.22 6.97 -2.39 -0.02 1.20 16 30 H 0.06 1.33 6.52 -2.39 -0.02 1.31 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.11 7.85 -2.39 -0.02 1.10 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.38 7.85 -2.39 -0.02 1.36 16 36 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 37 H 0.38 5.62 7.87 -74.06 -0.58 5.04 16 38 H 0.09 2.35 6.00 -2.38 -0.01 2.33 16 39 H 0.07 1.92 7.08 -2.39 -0.02 1.90 16 40 H 0.42 7.74 7.41 -96.75 -0.72 7.02 16 41 H 0.13 4.81 7.60 -2.91 -0.02 4.78 16 42 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 43 H 0.11 5.86 6.16 -2.91 -0.02 5.84 16 44 H 0.29 13.25 8.30 -92.70 -0.77 12.48 16 45 H 0.11 5.18 7.60 -2.91 -0.02 5.16 16 Total: -1.00 -66.44 370.10 -2.66 -69.09 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.27 Total: 39.22 kcal Atomic # 6 Polarization: -80.08 SS G_CDS: 2.98 Total: -77.10 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -0.80 Total: -70.13 kcal Atomic # 8 Polarization: -89.03 SS G_CDS: -6.27 Total: -95.31 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Atomic # 16 Polarization: 95.70 SS G_CDS: -0.32 Total: 95.37 kcal Total: -66.44 -2.66 -69.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590175567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.977 kcal (2) G-P(sol) polarization free energy of solvation -66.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds