Wall clock time and date at job start Tue Mar 31 2020 22:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46490 * 2 1 4 4 C 1.50696 * 109.47201 * 240.00435 * 2 1 3 5 5 H 1.07997 * 120.00212 * 239.99469 * 4 2 1 6 6 C 1.37882 * 120.00076 * 59.99585 * 4 2 1 7 7 N 1.31513 * 119.99984 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99757 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47597 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47112 * 120.00129 * 8 6 4 11 11 H 1.48505 * 109.47103 * 240.00122 * 8 6 4 12 12 C 1.52998 * 109.46936 * 120.00077 * 2 1 3 13 13 S 1.81394 * 109.47350 * 300.00055 * 12 2 1 14 14 O 1.42101 * 110.54395 * 68.37772 * 13 12 2 15 15 O 1.42106 * 110.54494 * 291.62935 * 13 12 2 16 16 N 1.65594 * 104.44899 * 180.02562 * 13 12 2 17 17 C 1.46390 * 119.80946 * 90.00414 * 16 13 12 18 18 C 1.52167 * 111.23685 * 116.49854 * 17 16 13 19 19 O 1.43213 * 110.19880 * 61.39104 * 18 17 16 20 20 C 1.35668 * 115.84252 * 270.62210 * 19 18 17 21 21 C 1.38809 * 120.31713 * 251.21244 * 20 19 18 22 22 C 1.38134 * 119.84587 * 177.32132 * 21 20 19 23 23 C 1.38284 * 120.30720 * 359.51219 * 22 21 20 24 24 C 1.38435 * 120.00266 * 0.94470 * 23 22 21 25 25 C 1.37724 * 119.69033 * 0.22735 * 24 23 22 26 26 C 1.46656 * 119.81464 * 270.02255 * 16 13 12 27 27 H 1.08994 * 109.47560 * 299.99521 * 1 2 3 28 28 H 1.08998 * 109.47565 * 60.00345 * 1 2 3 29 29 H 1.09004 * 109.46678 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46646 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47655 * 299.99855 * 3 2 1 32 32 H 1.09007 * 109.47370 * 60.00292 * 3 2 1 33 33 H 0.96997 * 119.99988 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46492 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47036 * 60.00504 * 12 2 1 36 36 H 1.08996 * 109.12642 * 356.04780 * 17 16 13 37 37 H 1.09000 * 109.07755 * 236.91801 * 17 16 13 38 38 H 1.08995 * 109.35356 * 301.16957 * 18 17 16 39 39 H 1.08998 * 109.23087 * 181.53427 * 18 17 16 40 40 H 1.08006 * 120.07714 * 357.34871 * 21 20 19 41 41 H 1.07997 * 119.84622 * 179.52786 * 22 21 20 42 42 H 1.07999 * 120.00124 * 180.92671 * 23 22 21 43 43 H 1.08001 * 120.15704 * 179.97438 * 24 23 22 44 44 H 1.08999 * 109.59348 * 19.89660 * 26 16 13 45 45 H 1.09001 * 109.59839 * 140.19013 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5883 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1467 -0.1871 -4.8165 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7303 14 8 0.0280 -0.0185 2.8544 15 8 2.0479 1.4100 2.8544 16 7 2.0541 -0.7401 3.9935 17 6 3.3629 -0.3904 4.5484 18 6 3.2448 0.0602 5.9970 19 8 2.7156 -0.9990 6.8027 20 6 1.3637 -1.0432 6.9077 21 6 0.7423 -0.7065 8.1024 22 6 -0.6367 -0.7014 8.1824 23 6 -1.4012 -1.0203 7.0751 24 6 -0.7848 -1.3658 5.8846 25 6 0.5902 -1.3943 5.8115 26 6 1.2881 -1.8603 4.5497 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8901 33 1 0.7095 1.1620 -3.4843 34 1 3.1300 -0.7208 1.2494 35 1 1.6767 -1.7489 1.2491 36 1 3.7972 0.4162 3.9578 37 1 4.0158 -1.2618 4.4975 38 1 2.5815 0.9231 6.0539 39 1 4.2313 0.3378 6.3682 40 1 1.3356 -0.4487 8.9673 41 1 -1.1201 -0.4468 9.1140 42 1 -2.4791 -1.0002 7.1390 43 1 -1.3794 -1.6157 5.0184 44 1 0.5464 -2.1923 3.8232 45 1 1.9628 -2.6834 4.7853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590744787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:19 Heat of formation + Delta-G solvation = -73.541247 kcal Electronic energy + Delta-G solvation = -28939.342117 eV Core-core repulsion = 25049.703463 eV Total energy + Delta-G solvation = -3889.638653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50373 -37.62583 -36.65676 -36.33356 -36.03784 -35.27817 -32.10069 -31.69780 -30.67213 -28.54314 -26.73539 -26.04894 -25.75960 -25.26342 -23.23451 -21.99811 -21.42552 -19.52063 -18.79061 -17.88177 -17.50453 -16.33099 -16.17752 -15.91816 -15.61354 -15.42631 -15.22095 -14.76229 -14.68337 -14.44064 -13.95944 -13.62206 -13.22318 -13.06423 -12.87148 -12.55510 -12.46805 -12.21241 -12.13339 -12.07736 -11.90458 -11.45924 -11.32337 -11.16858 -11.09576 -10.97977 -10.93404 -10.74334 -10.38488 -10.32089 -10.19718 -10.13452 -9.69734 -9.64404 -9.09391 -8.95137 -8.68778 -8.58201 -8.43864 -6.06880 -4.19008 0.70296 1.10547 1.27206 2.98152 3.22686 3.31321 3.32727 3.33921 3.91071 4.28995 4.36444 4.52498 4.64941 4.66948 4.78519 4.93511 4.96813 5.07413 5.15920 5.18814 5.24938 5.37012 5.44299 5.48727 5.58665 5.64907 5.67316 5.72355 5.86514 6.02323 6.23723 6.32990 6.39279 6.49071 6.57052 6.64693 6.65948 6.75229 6.86230 6.99720 7.26990 7.39177 7.45966 7.64593 7.93964 8.05792 8.29146 8.79845 9.46713 10.94466 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.003341 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.615722 B = 8378.496120 C = 8766.653781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.580 4.580 13 S 2.587 3.413 14 O -0.955 6.955 15 O -0.962 6.962 16 N -1.005 6.005 17 C 0.088 3.912 18 C 0.052 3.948 19 O -0.327 6.327 20 C 0.107 3.893 21 C -0.141 4.141 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.079 4.079 25 C -0.133 4.133 26 C 0.167 3.833 27 H 0.028 0.972 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.262 0.738 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.096 0.904 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 -4.240 18.619 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.714 4.714 13 S 2.686 3.314 14 O -0.946 6.946 15 O -0.952 6.952 16 N -0.839 5.839 17 C -0.038 4.038 18 C -0.024 4.024 19 O -0.244 6.244 20 C 0.063 3.937 21 C -0.159 4.159 22 C -0.124 4.124 23 C -0.150 4.150 24 C -0.098 4.098 25 C -0.136 4.136 26 C 0.042 3.958 27 H 0.046 0.954 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.153 0.847 44 H 0.114 0.886 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.677 -3.480 18.679 19.012 hybrid contribution 0.630 -0.860 -1.225 1.624 sum 1.308 -4.340 17.454 18.033 Atomic orbital electron populations 1.22269 0.96850 1.00616 1.02340 1.17947 0.92884 0.92201 0.89058 1.22275 0.99686 0.97822 1.02324 1.20979 1.31709 1.12107 0.89356 0.92237 1.24945 0.94869 0.94980 0.98964 1.69809 1.36331 1.22579 1.23418 0.86476 0.78658 0.79632 0.82865 1.19816 1.20912 1.20929 1.30571 1.11276 1.12809 1.16750 1.05985 0.74848 0.75133 0.75394 1.93535 1.29121 1.86369 1.85548 1.93528 1.78155 1.37798 1.85729 1.57879 1.28882 1.47173 1.49986 1.21697 0.84627 1.02349 0.95153 1.23107 0.99964 0.88856 0.90454 1.86087 1.17121 1.51157 1.69999 1.18578 0.83108 0.98942 0.93100 1.21206 0.94876 1.01846 0.97995 1.21019 0.93116 0.99517 0.98759 1.21243 1.00149 1.00595 0.92980 1.21048 0.93310 0.97383 0.98077 1.20805 0.94430 1.02219 0.96126 1.20322 0.94474 0.88492 0.92558 0.95358 0.88654 0.94474 0.94496 0.88607 0.95434 0.92767 0.86424 0.86392 0.87659 0.90259 0.91718 0.87366 0.85495 0.85715 0.85612 0.84658 0.88579 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 7.77 37.16 0.29 -3.67 16 2 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 3 C -0.16 -3.98 7.77 37.16 0.29 -3.69 16 4 C -0.50 -13.04 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -23.90 9.35 55.43 0.52 -23.38 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C -0.58 -11.14 5.12 37.16 0.19 -10.95 16 13 S 2.59 47.50 4.38 -107.50 -0.47 47.03 16 14 O -0.96 -19.37 14.50 -57.54 -0.83 -20.20 16 15 O -0.96 -19.72 14.20 -57.54 -0.82 -20.54 16 16 N -1.00 -14.44 2.93 -115.64 -0.34 -14.78 16 17 C 0.09 1.05 6.15 -4.53 -0.03 1.02 16 18 C 0.05 0.59 6.67 36.73 0.24 0.84 16 19 O -0.33 -4.13 9.91 -18.71 -0.19 -4.32 16 20 C 0.11 1.41 5.62 -39.21 -0.22 1.18 16 21 C -0.14 -1.60 10.00 -39.41 -0.39 -1.99 16 22 C -0.11 -1.09 10.03 -39.60 -0.40 -1.48 16 23 C -0.13 -1.45 10.06 -39.49 -0.40 -1.84 16 24 C -0.08 -1.02 9.71 -39.70 -0.39 -1.41 16 25 C -0.13 -1.82 5.48 -104.23 -0.57 -2.39 16 26 C 0.17 2.18 5.46 -4.69 -0.03 2.15 16 27 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 28 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 32 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 33 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 35 H 0.12 2.05 8.14 -51.93 -0.42 1.62 16 36 H 0.11 1.25 6.90 -51.93 -0.36 0.89 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.14 1.67 8.00 -52.49 -0.42 1.25 16 44 H 0.10 1.20 7.23 -51.93 -0.38 0.82 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -31.76 359.94 -10.11 -41.87 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.53 Total: 5.56 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: -1.85 Total: -32.08 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.18 Total: -38.16 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.84 Total: -45.06 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 47.50 SS G_CDS: -0.47 Total: 47.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.76 -10.11 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590744787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.676 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds