Wall clock time and date at job start Tue Mar 31 2020 22:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46490 * 2 1 4 4 C 1.50696 * 109.47201 * 240.00435 * 2 1 3 5 5 H 1.07997 * 120.00212 * 239.99469 * 4 2 1 6 6 C 1.37882 * 120.00076 * 59.99585 * 4 2 1 7 7 N 1.31513 * 119.99984 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99757 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47597 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47112 * 120.00129 * 8 6 4 11 11 H 1.48505 * 109.47103 * 240.00122 * 8 6 4 12 12 C 1.52998 * 109.46936 * 120.00077 * 2 1 3 13 13 S 1.81394 * 109.47350 * 300.00055 * 12 2 1 14 14 O 1.42101 * 110.54395 * 68.37772 * 13 12 2 15 15 O 1.42106 * 110.54494 * 291.62935 * 13 12 2 16 16 N 1.65594 * 104.44899 * 180.02562 * 13 12 2 17 17 C 1.46390 * 119.80946 * 90.00414 * 16 13 12 18 18 C 1.52167 * 111.23685 * 116.49854 * 17 16 13 19 19 O 1.43213 * 110.19880 * 61.39104 * 18 17 16 20 20 C 1.35668 * 115.84252 * 270.62210 * 19 18 17 21 21 C 1.38809 * 120.31713 * 251.21244 * 20 19 18 22 22 C 1.38134 * 119.84587 * 177.32132 * 21 20 19 23 23 C 1.38284 * 120.30720 * 359.51219 * 22 21 20 24 24 C 1.38435 * 120.00266 * 0.94470 * 23 22 21 25 25 C 1.37724 * 119.69033 * 0.22735 * 24 23 22 26 26 C 1.46656 * 119.81464 * 270.02255 * 16 13 12 27 27 H 1.08994 * 109.47560 * 299.99521 * 1 2 3 28 28 H 1.08998 * 109.47565 * 60.00345 * 1 2 3 29 29 H 1.09004 * 109.46678 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46646 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47655 * 299.99855 * 3 2 1 32 32 H 1.09007 * 109.47370 * 60.00292 * 3 2 1 33 33 H 0.96997 * 119.99988 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46492 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47036 * 60.00504 * 12 2 1 36 36 H 1.08996 * 109.12642 * 356.04780 * 17 16 13 37 37 H 1.09000 * 109.07755 * 236.91801 * 17 16 13 38 38 H 1.08995 * 109.35356 * 301.16957 * 18 17 16 39 39 H 1.08998 * 109.23087 * 181.53427 * 18 17 16 40 40 H 1.08006 * 120.07714 * 357.34871 * 21 20 19 41 41 H 1.07997 * 119.84622 * 179.52786 * 22 21 20 42 42 H 1.07999 * 120.00124 * 180.92671 * 23 22 21 43 43 H 1.08001 * 120.15704 * 179.97438 * 24 23 22 44 44 H 1.08999 * 109.59348 * 19.89660 * 26 16 13 45 45 H 1.09001 * 109.59839 * 140.19013 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5883 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1467 -0.1871 -4.8165 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7303 14 8 0.0280 -0.0185 2.8544 15 8 2.0479 1.4100 2.8544 16 7 2.0541 -0.7401 3.9935 17 6 3.3629 -0.3904 4.5484 18 6 3.2448 0.0602 5.9970 19 8 2.7156 -0.9990 6.8027 20 6 1.3637 -1.0432 6.9077 21 6 0.7423 -0.7065 8.1024 22 6 -0.6367 -0.7014 8.1824 23 6 -1.4012 -1.0203 7.0751 24 6 -0.7848 -1.3658 5.8846 25 6 0.5902 -1.3943 5.8115 26 6 1.2881 -1.8603 4.5497 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8901 33 1 0.7095 1.1620 -3.4843 34 1 3.1300 -0.7208 1.2494 35 1 1.6767 -1.7489 1.2491 36 1 3.7972 0.4162 3.9578 37 1 4.0158 -1.2618 4.4975 38 1 2.5815 0.9231 6.0539 39 1 4.2313 0.3378 6.3682 40 1 1.3356 -0.4487 8.9673 41 1 -1.1201 -0.4468 9.1140 42 1 -2.4791 -1.0002 7.1390 43 1 -1.3794 -1.6157 5.0184 44 1 0.5464 -2.1923 3.8232 45 1 1.9628 -2.6834 4.7853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590744787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:18 Heat of formation + Delta-G solvation = -92.824961 kcal Electronic energy + Delta-G solvation = -28940.178321 eV Core-core repulsion = 25049.703463 eV Total energy + Delta-G solvation = -3890.474858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40330 -38.55478 -38.16667 -38.11699 -37.15927 -36.76383 -33.64597 -33.00009 -31.56212 -29.49749 -28.33350 -27.71386 -27.27176 -27.04573 -24.17561 -22.93312 -22.32527 -21.33375 -20.02108 -19.10663 -18.65962 -17.93817 -17.45637 -17.12284 -16.92237 -16.58073 -16.49824 -16.22993 -15.82868 -15.47432 -15.02971 -14.87491 -14.69264 -14.46295 -14.44278 -13.96358 -13.87253 -13.59745 -13.26532 -13.13350 -12.99910 -12.92506 -12.91630 -12.76794 -12.68032 -12.49857 -12.28680 -12.19995 -12.12705 -11.96748 -11.89879 -11.59004 -11.39209 -11.09466 -10.66125 -10.43549 -10.11772 -9.83090 -9.48573 -8.04547 -6.23312 -0.71814 0.20282 0.37684 1.42316 1.45566 1.55014 1.73939 2.43144 2.44422 2.86931 3.01912 3.16356 3.20598 3.61337 3.73523 3.86977 4.00888 4.06462 4.11025 4.17776 4.21796 4.29720 4.46013 4.52452 4.57317 4.57884 4.61658 4.73105 4.81646 4.83968 4.84858 4.95661 4.97823 5.05465 5.09566 5.36297 5.39413 5.46262 5.53372 5.55207 5.58276 5.63450 5.80553 5.95374 6.09624 6.32443 6.49262 6.81708 7.45261 8.95462 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.003341 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.615722 B = 8378.496120 C = 8766.653781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.069 3.931 3 C -0.159 4.159 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.584 4.584 13 S 2.604 3.396 14 O -0.979 6.979 15 O -0.987 6.987 16 N -0.997 5.997 17 C 0.076 3.924 18 C 0.051 3.949 19 O -0.330 6.330 20 C 0.088 3.912 21 C -0.146 4.146 22 C -0.102 4.102 23 C -0.136 4.136 24 C -0.101 4.101 25 C -0.155 4.155 26 C 0.161 3.839 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.047 0.953 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 -5.404 20.372 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.556 4.556 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.189 1.189 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.717 4.717 13 S 2.703 3.297 14 O -0.969 6.969 15 O -0.977 6.977 16 N -0.833 5.833 17 C -0.049 4.049 18 C -0.025 4.025 19 O -0.247 6.247 20 C 0.044 3.956 21 C -0.164 4.164 22 C -0.120 4.120 23 C -0.154 4.154 24 C -0.120 4.120 25 C -0.157 4.157 26 C 0.036 3.964 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.065 0.935 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.166 0.834 43 H 0.149 0.851 44 H 0.114 0.886 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.639 -4.647 20.423 21.009 hybrid contribution 0.312 -0.493 -1.661 1.761 sum 1.950 -5.140 18.762 19.551 Atomic orbital electron populations 1.22189 0.97646 1.00488 1.01284 1.17936 0.92425 0.92130 0.90850 1.22198 0.99846 0.98369 1.01257 1.21322 1.31627 1.12289 0.90369 0.91874 1.25681 0.95164 0.95651 1.01689 1.69949 1.37209 1.23685 1.23815 0.85560 0.78060 0.78750 0.79587 1.18917 1.20941 1.20941 1.30502 1.12505 1.13317 1.15355 1.05182 0.74140 0.74760 0.75600 1.93496 1.30798 1.86692 1.85956 1.93487 1.78474 1.39544 1.86180 1.57531 1.29941 1.47243 1.48633 1.22032 0.83648 1.03700 0.95479 1.23254 1.01221 0.87905 0.90103 1.86079 1.16925 1.51565 1.70114 1.18822 0.83413 0.99689 0.93683 1.21520 0.95658 1.01252 0.98016 1.21407 0.92811 0.98081 0.99706 1.21570 1.01496 0.99758 0.92537 1.21213 0.93404 0.98423 0.98920 1.20931 0.94876 1.03367 0.96557 1.20539 0.94913 0.88409 0.92535 0.94911 0.91151 0.94068 0.94038 0.91078 0.95045 0.92914 0.84582 0.84650 0.87678 0.87457 0.93464 0.83912 0.83677 0.82563 0.83440 0.85135 0.88629 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.80 7.77 71.98 0.56 -7.24 16 2 C 0.07 3.28 0.52 -52.93 -0.03 3.26 16 3 C -0.16 -7.84 7.77 71.98 0.56 -7.28 16 4 C -0.52 -26.69 8.01 25.60 0.21 -26.48 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 0.92 5.15 84.66 0.44 1.36 16 7 N -0.91 -50.03 9.35 21.45 0.20 -49.83 16 8 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 C -0.58 -21.81 5.12 71.98 0.37 -21.45 16 13 S 2.60 94.22 4.38 -56.49 -0.25 93.98 16 14 O -0.98 -39.81 14.50 -127.65 -1.85 -41.66 16 15 O -0.99 -40.22 14.20 -127.65 -1.81 -42.04 16 16 N -1.00 -27.28 2.93 -519.77 -1.53 -28.80 16 17 C 0.08 1.67 6.15 86.12 0.53 2.19 16 18 C 0.05 1.05 6.67 71.71 0.48 1.52 16 19 O -0.33 -7.66 9.91 -89.85 -0.89 -8.55 16 20 C 0.09 2.18 5.62 22.51 0.13 2.31 16 21 C -0.15 -3.01 10.00 22.38 0.22 -2.79 16 22 C -0.10 -1.84 10.03 22.26 0.22 -1.62 16 23 C -0.14 -2.76 10.06 22.33 0.22 -2.54 16 24 C -0.10 -2.54 9.71 22.19 0.22 -2.32 16 25 C -0.15 -4.08 5.48 -19.61 -0.11 -4.18 16 26 C 0.16 4.00 5.46 85.87 0.47 4.47 16 27 H 0.03 1.54 5.46 -2.39 -0.01 1.52 16 28 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 29 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 32 H 0.03 1.48 5.46 -2.38 -0.01 1.47 16 33 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 34 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 35 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 36 H 0.11 2.31 6.90 -2.39 -0.02 2.29 16 37 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.13 7.88 -2.39 -0.02 1.11 16 39 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 42 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.13 3.26 8.00 -2.91 -0.02 3.24 16 44 H 0.10 2.33 7.23 -2.39 -0.02 2.31 16 45 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -68.37 359.94 1.37 -66.99 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.99 Total: 26.86 kcal Atomic # 6 Polarization: -65.27 SS G_CDS: 4.48 Total: -60.79 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -1.32 Total: -78.64 kcal Atomic # 8 Polarization: -87.69 SS G_CDS: -4.55 Total: -92.24 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 94.22 SS G_CDS: -0.25 Total: 93.98 kcal Total: -68.37 1.37 -66.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590744787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.830 kcal (2) G-P(sol) polarization free energy of solvation -68.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds