Wall clock time and date at job start Tue Mar 31 2020 23:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42906 * 114.00048 * 2 1 4 4 H 1.09007 * 109.44307 * 330.03382 * 3 2 1 5 5 C 1.53034 * 109.46313 * 89.99643 * 3 2 1 6 6 C 1.53195 * 109.31361 * 181.38425 * 5 3 2 7 7 N 1.46920 * 108.77578 * 305.36891 * 6 5 3 8 8 S 1.65608 * 120.62876 * 233.57913 * 7 6 5 9 9 O 1.42101 * 106.40048 * 336.46526 * 8 7 6 10 10 O 1.42102 * 106.40028 * 203.54363 * 8 7 6 11 11 C 1.76203 * 107.21210 * 90.00491 * 8 7 6 12 12 C 1.38661 * 119.87411 * 269.72275 * 11 8 7 13 13 C 1.38609 * 120.49910 * 179.72501 * 12 11 8 14 14 C 1.37640 * 120.24913 * 0.55389 * 13 12 11 15 15 C 1.40691 * 119.74253 * 359.72737 * 14 13 12 16 16 C 1.41398 * 120.24551 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00475 * 204.37638 * 16 15 14 18 18 C 1.39949 * 119.99881 * 24.37050 * 16 15 14 19 19 N 1.30825 * 119.99890 * 17.87704 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 197.87153 * 18 16 15 21 21 H 1.48508 * 109.46996 * 90.00162 * 20 18 16 22 22 H 1.48500 * 109.47309 * 210.00004 * 20 18 16 23 23 H 1.48502 * 109.47493 * 330.00302 * 20 18 16 24 24 C 1.37589 * 119.87624 * 90.00457 * 11 8 7 25 25 C 1.46922 * 118.74164 * 53.86277 * 7 6 5 26 26 C 1.53042 * 109.46207 * 210.07156 * 3 2 1 27 27 H 1.09001 * 109.50029 * 58.62402 * 26 3 2 28 28 C 1.53010 * 109.49206 * 298.56200 * 26 3 2 29 29 H 1.09003 * 109.47117 * 300.00012 * 1 2 3 30 30 H 1.09000 * 109.47488 * 59.99876 * 1 2 3 31 31 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.49653 * 61.43673 * 5 3 2 33 33 H 1.08998 * 109.52665 * 301.35498 * 5 3 2 34 34 H 1.08999 * 109.58715 * 185.57711 * 6 5 3 35 35 H 1.09007 * 109.58140 * 65.16046 * 6 5 3 36 36 H 1.08001 * 119.74693 * 0.02562 * 12 11 8 37 37 H 1.08003 * 119.87551 * 180.25865 * 13 12 11 38 38 H 1.08001 * 120.12535 * 179.74453 * 14 13 12 39 39 H 0.97002 * 119.99845 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.12809 * 0.02562 * 24 11 8 41 41 H 1.08996 * 109.58890 * 65.91920 * 25 7 6 42 42 H 1.08997 * 109.59122 * 186.34816 * 25 7 6 43 43 H 1.08994 * 109.47222 * 60.00017 * 28 26 3 44 44 H 1.09005 * 109.46319 * 179.97438 * 28 26 3 45 45 H 1.08999 * 109.46935 * 299.99754 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3443 1.9992 -0.5134 5 6 2.2175 1.7714 1.4429 6 6 2.8085 3.1847 1.4390 7 7 4.0307 3.1840 0.6236 8 16 5.4582 3.7513 1.2425 9 8 5.1135 4.6423 2.2945 10 8 6.2542 4.1340 0.1292 11 6 6.2792 2.3861 1.9955 12 6 6.0568 2.0990 3.3337 13 6 6.6914 1.0249 3.9376 14 6 7.5596 0.2374 3.2161 15 6 7.7974 0.5229 1.8592 16 6 8.6869 -0.2794 1.1078 17 1 9.1735 0.1271 0.2335 18 6 8.9367 -1.6002 1.4971 19 7 8.1165 -2.2070 2.3161 20 14 10.4410 -2.4969 0.8473 21 1 11.5864 -2.2719 1.7654 22 1 10.1524 -3.9511 0.7629 23 1 10.7802 -1.9804 -0.5031 24 6 7.1431 1.6126 1.2549 25 6 3.9610 2.6762 -0.7533 26 6 3.3584 1.2634 -0.7230 27 1 3.2131 0.9087 -1.7434 28 6 4.3052 0.3163 0.0170 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.9028 1.0918 1.9497 33 1 1.2604 1.7787 1.9644 34 1 3.0501 3.4825 2.4593 35 1 2.0861 3.8817 1.0141 36 1 5.3802 2.7141 3.9084 37 1 6.5075 0.8079 4.9795 38 1 8.0562 -0.5965 3.6898 39 1 8.2895 -3.1226 2.5857 40 1 7.3187 1.8410 0.2140 41 1 3.3307 3.3324 -1.3533 42 1 4.9633 2.6384 -1.1800 43 1 3.8738 -0.6844 0.0394 44 1 5.2651 0.2863 -0.4987 45 1 4.4511 0.6721 1.0369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590762055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:54 Heat of formation + Delta-G solvation = -105.251584 kcal Electronic energy + Delta-G solvation = -29181.993473 eV Core-core repulsion = 25290.979756 eV Total energy + Delta-G solvation = -3891.013717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.50436 -37.63079 -36.78094 -36.73457 -35.31806 -33.82999 -32.53206 -31.18702 -30.05620 -29.78178 -26.93612 -26.42051 -25.46595 -23.74875 -22.88125 -21.83116 -20.95939 -19.42914 -18.48006 -18.05875 -17.21131 -16.38793 -15.96335 -15.73450 -15.26691 -15.21324 -15.06783 -14.81379 -14.48366 -14.28867 -13.50484 -13.45921 -13.33345 -13.07746 -12.73560 -12.59730 -12.56371 -11.92354 -11.81094 -11.71184 -11.59489 -11.44971 -11.37548 -11.31199 -11.27191 -11.07499 -11.05485 -10.97873 -10.85008 -10.59055 -10.46263 -10.18738 -9.74944 -9.58603 -9.46280 -9.33762 -8.79771 -7.99447 -7.67832 -6.90896 -4.51540 0.97280 2.21603 2.65190 3.01215 3.04983 3.07928 3.43864 3.72717 3.84220 4.27901 4.43373 4.68781 4.71213 4.90213 5.00435 5.17054 5.21316 5.26715 5.29155 5.33071 5.44042 5.47943 5.58047 5.65439 5.71776 5.77853 5.90778 6.03239 6.06697 6.17526 6.22828 6.27129 6.47995 6.58004 6.65582 6.70243 6.78866 6.93661 6.98673 7.06572 7.21902 7.23721 7.40264 7.74948 7.82714 7.96199 8.42339 8.69112 8.73911 10.04276 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.004708 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.102132 B = 5945.427046 C = 7155.596691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.100 3.900 4 H 0.057 0.943 5 C -0.161 4.161 6 C 0.129 3.871 7 N -0.999 5.999 8 S 2.684 3.316 9 O -0.974 6.974 10 O -0.970 6.970 11 C -0.629 4.629 12 C -0.147 4.147 13 C -0.120 4.120 14 C -0.118 4.118 15 C 0.094 3.906 16 C -0.460 4.460 17 H 0.082 0.918 18 C 0.077 3.923 19 N -0.792 5.792 20 Si 0.909 3.091 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.119 4.119 25 C 0.130 3.870 26 C -0.101 4.101 27 H 0.082 0.918 28 C -0.146 4.146 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.283 0.717 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 3.286 -3.584 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.042 3.958 4 H 0.075 0.925 5 C -0.200 4.200 6 C 0.003 3.997 7 N -0.835 5.835 8 S 2.782 3.218 9 O -0.965 6.965 10 O -0.960 6.960 11 C -0.721 4.721 12 C -0.169 4.169 13 C -0.140 4.140 14 C -0.138 4.138 15 C 0.091 3.909 16 C -0.489 4.489 17 H 0.100 0.900 18 C -0.142 4.142 19 N -0.417 5.417 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.184 1.184 24 C -0.140 4.140 25 C 0.004 3.996 26 C -0.121 4.121 27 H 0.100 0.900 28 C -0.203 4.203 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.057 3.794 -3.556 13.131 hybrid contribution 0.417 -1.203 0.083 1.276 sum -11.640 2.591 -3.473 12.421 Atomic orbital electron populations 1.22745 0.81828 1.02415 0.99555 1.87979 1.18877 1.27908 1.94987 1.22048 0.94367 0.84067 0.95324 0.92478 1.22486 1.01963 0.97710 0.97865 1.21294 0.86177 0.96303 0.95899 1.57797 1.24063 1.80327 1.21332 1.01878 0.72152 0.74722 0.73091 1.93499 1.83496 1.62458 1.57045 1.93517 1.67813 1.81968 1.52741 1.29739 1.15738 1.21406 1.05226 1.20026 1.04286 0.99668 0.92886 1.20784 0.98930 0.96005 0.98237 1.21620 0.98704 0.99473 0.93989 1.17639 0.90659 0.90826 0.91781 1.19609 1.22471 0.95780 1.11075 0.90000 1.25906 0.96602 0.97807 0.93858 1.69783 1.32388 1.12603 1.26952 0.86280 0.81596 0.78302 0.80452 1.19210 1.20249 1.18446 1.20706 0.97817 0.97876 0.97626 1.21543 1.02918 0.93351 0.81778 1.21672 0.94219 0.96134 1.00094 0.89955 1.21855 0.98212 0.98694 1.01501 0.94291 0.94410 0.89953 0.89349 0.91130 0.88848 0.91417 0.87870 0.88571 0.85873 0.90637 0.87304 0.91289 0.88363 0.92296 0.92112 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.38 -4.96 9.74 -35.23 -0.34 -5.30 16 3 C 0.10 1.21 2.25 -26.69 -0.06 1.15 16 4 H 0.06 0.58 7.78 -51.93 -0.40 0.18 16 5 C -0.16 -1.98 5.35 -26.61 -0.14 -2.12 16 6 C 0.13 1.62 6.37 -3.71 -0.02 1.60 16 7 N -1.00 -14.89 2.72 -113.28 -0.31 -15.20 16 8 S 2.68 50.52 5.69 -107.50 -0.61 49.91 16 9 O -0.97 -19.71 15.98 -57.17 -0.91 -20.62 16 10 O -0.97 -20.16 15.97 -57.17 -0.91 -21.07 16 11 C -0.63 -13.39 5.04 -39.66 -0.20 -13.59 16 12 C -0.15 -3.14 9.53 -39.29 -0.37 -3.51 16 13 C -0.12 -2.66 10.02 -39.66 -0.40 -3.05 16 14 C -0.12 -2.89 8.70 -38.87 -0.34 -3.23 16 15 C 0.09 2.37 5.58 -106.82 -0.60 1.78 16 16 C -0.46 -11.57 9.05 -37.74 -0.34 -11.91 16 17 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 18 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 19 N -0.79 -19.35 10.95 55.55 0.61 -18.74 16 20 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.12 -2.75 8.87 -38.87 -0.34 -3.09 16 25 C 0.13 1.72 5.81 -3.49 -0.02 1.70 16 26 C -0.10 -1.34 2.94 -90.27 -0.27 -1.61 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 C -0.15 -2.43 8.35 37.16 0.31 -2.12 16 29 H 0.04 0.32 7.85 -51.93 -0.41 -0.08 16 30 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.30 6.34 -51.92 -0.33 0.97 16 33 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 34 H 0.09 1.21 7.13 -51.93 -0.37 0.84 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.10 1.99 7.59 -52.49 -0.40 1.60 16 37 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 38 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 39 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 40 H 0.11 2.44 7.60 -52.48 -0.40 2.04 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.39 7.12 -51.93 -0.37 1.02 16 43 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 44 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 45 H 0.07 1.28 4.89 -51.93 -0.25 1.03 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -29.40 366.83 -10.34 -39.74 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.57 Total: 7.69 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: -1.79 Total: -34.90 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.30 Total: -33.94 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -2.17 Total: -46.99 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 50.52 SS G_CDS: -0.61 Total: 49.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.40 -10.34 -39.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590762055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.514 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds