Wall clock time and date at job start Tue Mar 31 2020 23:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42906 * 114.00048 * 2 1 4 4 H 1.09007 * 109.44307 * 330.03382 * 3 2 1 5 5 C 1.53034 * 109.46313 * 89.99643 * 3 2 1 6 6 C 1.53195 * 109.31361 * 181.38425 * 5 3 2 7 7 N 1.46920 * 108.77578 * 305.36891 * 6 5 3 8 8 S 1.65608 * 120.62876 * 233.57913 * 7 6 5 9 9 O 1.42101 * 106.40048 * 336.46526 * 8 7 6 10 10 O 1.42102 * 106.40028 * 203.54363 * 8 7 6 11 11 C 1.76203 * 107.21210 * 90.00491 * 8 7 6 12 12 C 1.38661 * 119.87411 * 269.72275 * 11 8 7 13 13 C 1.38609 * 120.49910 * 179.72501 * 12 11 8 14 14 C 1.37640 * 120.24913 * 0.55389 * 13 12 11 15 15 C 1.40691 * 119.74253 * 359.72737 * 14 13 12 16 16 C 1.41398 * 120.24551 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00475 * 204.37638 * 16 15 14 18 18 C 1.39949 * 119.99881 * 24.37050 * 16 15 14 19 19 N 1.30825 * 119.99890 * 17.87704 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 197.87153 * 18 16 15 21 21 H 1.48508 * 109.46996 * 90.00162 * 20 18 16 22 22 H 1.48500 * 109.47309 * 210.00004 * 20 18 16 23 23 H 1.48502 * 109.47493 * 330.00302 * 20 18 16 24 24 C 1.37589 * 119.87624 * 90.00457 * 11 8 7 25 25 C 1.46922 * 118.74164 * 53.86277 * 7 6 5 26 26 C 1.53042 * 109.46207 * 210.07156 * 3 2 1 27 27 H 1.09001 * 109.50029 * 58.62402 * 26 3 2 28 28 C 1.53010 * 109.49206 * 298.56200 * 26 3 2 29 29 H 1.09003 * 109.47117 * 300.00012 * 1 2 3 30 30 H 1.09000 * 109.47488 * 59.99876 * 1 2 3 31 31 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.49653 * 61.43673 * 5 3 2 33 33 H 1.08998 * 109.52665 * 301.35498 * 5 3 2 34 34 H 1.08999 * 109.58715 * 185.57711 * 6 5 3 35 35 H 1.09007 * 109.58140 * 65.16046 * 6 5 3 36 36 H 1.08001 * 119.74693 * 0.02562 * 12 11 8 37 37 H 1.08003 * 119.87551 * 180.25865 * 13 12 11 38 38 H 1.08001 * 120.12535 * 179.74453 * 14 13 12 39 39 H 0.97002 * 119.99845 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.12809 * 0.02562 * 24 11 8 41 41 H 1.08996 * 109.58890 * 65.91920 * 25 7 6 42 42 H 1.08997 * 109.59122 * 186.34816 * 25 7 6 43 43 H 1.08994 * 109.47222 * 60.00017 * 28 26 3 44 44 H 1.09005 * 109.46319 * 179.97438 * 28 26 3 45 45 H 1.08999 * 109.46935 * 299.99754 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3443 1.9992 -0.5134 5 6 2.2175 1.7714 1.4429 6 6 2.8085 3.1847 1.4390 7 7 4.0307 3.1840 0.6236 8 16 5.4582 3.7513 1.2425 9 8 5.1135 4.6423 2.2945 10 8 6.2542 4.1340 0.1292 11 6 6.2792 2.3861 1.9955 12 6 6.0568 2.0990 3.3337 13 6 6.6914 1.0249 3.9376 14 6 7.5596 0.2374 3.2161 15 6 7.7974 0.5229 1.8592 16 6 8.6869 -0.2794 1.1078 17 1 9.1735 0.1271 0.2335 18 6 8.9367 -1.6002 1.4971 19 7 8.1165 -2.2070 2.3161 20 14 10.4410 -2.4969 0.8473 21 1 11.5864 -2.2719 1.7654 22 1 10.1524 -3.9511 0.7629 23 1 10.7802 -1.9804 -0.5031 24 6 7.1431 1.6126 1.2549 25 6 3.9610 2.6762 -0.7533 26 6 3.3584 1.2634 -0.7230 27 1 3.2131 0.9087 -1.7434 28 6 4.3052 0.3163 0.0170 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.9028 1.0918 1.9497 33 1 1.2604 1.7787 1.9644 34 1 3.0501 3.4825 2.4593 35 1 2.0861 3.8817 1.0141 36 1 5.3802 2.7141 3.9084 37 1 6.5075 0.8079 4.9795 38 1 8.0562 -0.5965 3.6898 39 1 8.2895 -3.1226 2.5857 40 1 7.3187 1.8410 0.2140 41 1 3.3307 3.3324 -1.3533 42 1 4.9633 2.6384 -1.1800 43 1 3.8738 -0.6844 0.0394 44 1 5.2651 0.2863 -0.4987 45 1 4.4511 0.6721 1.0369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590762055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:54 Heat of formation + Delta-G solvation = -123.329006 kcal Electronic energy + Delta-G solvation = -29182.777369 eV Core-core repulsion = 25290.979756 eV Total energy + Delta-G solvation = -3891.797613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.51663 -39.41755 -38.33529 -37.74248 -36.91113 -35.64643 -33.67996 -32.21348 -31.87829 -31.56233 -27.88821 -27.46048 -27.31650 -24.78157 -23.93179 -23.57447 -22.75513 -20.73897 -19.87837 -19.47561 -18.65929 -17.73484 -17.30281 -17.12327 -16.83038 -16.48827 -16.26396 -16.01166 -15.75938 -15.59368 -15.16434 -15.05499 -14.50228 -14.27654 -14.05660 -13.93542 -13.70916 -13.61867 -13.33630 -13.19792 -13.07200 -13.04108 -12.88297 -12.77810 -12.60553 -12.53954 -12.47681 -12.22011 -12.16111 -12.03318 -11.56841 -11.49934 -11.30925 -11.21288 -11.13228 -10.35869 -10.03379 -9.74983 -9.51836 -8.71190 -6.42212 -0.52040 0.44921 0.87608 1.36753 1.45911 1.49193 2.04608 2.17531 2.58294 2.75430 2.91534 3.35955 3.53766 3.65073 3.83090 4.06198 4.10101 4.23692 4.31611 4.33696 4.44696 4.48383 4.56339 4.61234 4.66325 4.72520 4.77426 4.86292 4.88521 4.92876 4.93054 4.94540 5.02437 5.08632 5.16114 5.22388 5.28644 5.37784 5.43698 5.56511 5.60293 5.70850 5.91928 5.96530 6.12914 6.40776 6.55479 6.82705 6.88010 8.26218 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.004708 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.102132 B = 5945.427046 C = 7155.596691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.101 3.899 4 H 0.090 0.910 5 C -0.158 4.158 6 C 0.122 3.878 7 N -0.990 5.990 8 S 2.708 3.292 9 O -0.984 6.984 10 O -0.990 6.990 11 C -0.635 4.635 12 C -0.147 4.147 13 C -0.123 4.123 14 C -0.142 4.142 15 C 0.068 3.932 16 C -0.496 4.496 17 H 0.077 0.923 18 C 0.040 3.960 19 N -0.820 5.820 20 Si 0.978 3.022 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.259 1.259 24 C -0.130 4.130 25 C 0.124 3.876 26 C -0.097 4.097 27 H 0.099 0.901 28 C -0.139 4.139 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.290 0.710 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.649 4.284 -4.282 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.044 3.956 4 H 0.108 0.892 5 C -0.197 4.197 6 C -0.003 4.003 7 N -0.830 5.830 8 S 2.802 3.198 9 O -0.975 6.975 10 O -0.980 6.980 11 C -0.724 4.724 12 C -0.168 4.168 13 C -0.142 4.142 14 C -0.162 4.162 15 C 0.065 3.935 16 C -0.525 4.525 17 H 0.095 0.905 18 C -0.175 4.175 19 N -0.446 5.446 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.183 1.183 24 C -0.151 4.151 25 C -0.001 4.001 26 C -0.117 4.117 27 H 0.117 0.883 28 C -0.196 4.196 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.311 4.774 -4.226 15.667 hybrid contribution 0.950 -1.472 0.316 1.780 sum -13.360 3.302 -3.910 14.307 Atomic orbital electron populations 1.22943 0.79913 1.03321 1.00938 1.87952 1.21081 1.28577 1.95136 1.22059 0.93926 0.84567 0.95063 0.89169 1.22454 1.02313 0.96742 0.98238 1.21623 0.85560 0.97349 0.95746 1.57558 1.23209 1.80070 1.22123 1.01195 0.72505 0.73762 0.72373 1.93479 1.83782 1.62465 1.57728 1.93487 1.69315 1.82108 1.53137 1.30270 1.15022 1.21648 1.05445 1.20368 1.03926 0.99387 0.93112 1.21085 0.98025 0.95715 0.99412 1.21595 1.00277 1.00128 0.94183 1.17955 0.91339 0.91781 0.92403 1.19820 1.23943 0.97020 1.11762 0.90528 1.26672 0.98977 0.97995 0.93900 1.69826 1.33716 1.13220 1.27830 0.85249 0.77772 0.77318 0.79727 1.18720 1.19151 1.18300 1.20712 0.98503 0.98157 0.97722 1.21785 1.03165 0.94067 0.81053 1.21650 0.94267 0.95115 1.00636 0.88319 1.21741 0.98084 0.99077 1.00701 0.93150 0.92647 0.89498 0.92660 0.88638 0.89271 0.87480 0.85504 0.86056 0.87231 0.89920 0.87622 0.87075 0.89818 0.93699 0.94402 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.41 -9.82 9.74 -148.98 -1.45 -11.27 16 3 C 0.10 2.14 2.25 30.62 0.07 2.21 16 4 H 0.09 1.36 7.78 -2.38 -0.02 1.34 16 5 C -0.16 -3.49 5.35 30.67 0.16 -3.32 16 6 C 0.12 2.66 6.37 86.36 0.55 3.21 16 7 N -0.99 -27.46 2.72 -512.30 -1.39 -28.85 16 8 S 2.71 99.64 5.69 -56.49 -0.32 99.32 16 9 O -0.98 -38.14 15.98 -128.00 -2.04 -40.19 16 10 O -0.99 -40.81 15.97 -128.00 -2.04 -42.85 16 11 C -0.64 -27.45 5.04 22.22 0.11 -27.34 16 12 C -0.15 -6.27 9.53 22.46 0.21 -6.06 16 13 C -0.12 -5.54 10.02 22.22 0.22 -5.32 16 14 C -0.14 -7.26 8.70 22.73 0.20 -7.06 16 15 C 0.07 3.62 5.58 -21.29 -0.12 3.50 16 16 C -0.50 -26.30 9.05 23.46 0.21 -26.09 16 17 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 18 C 0.04 1.98 5.14 85.26 0.44 2.42 16 19 N -0.82 -41.60 10.95 21.83 0.24 -41.36 16 20 Si 0.98 37.70 29.59 68.60 2.03 39.73 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 22 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 C -0.13 -6.29 8.87 22.73 0.20 -6.09 16 25 C 0.12 3.01 5.81 86.51 0.50 3.51 16 26 C -0.10 -2.41 2.94 -10.57 -0.03 -2.44 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 28 C -0.14 -4.79 8.35 71.99 0.60 -4.19 16 29 H 0.05 0.67 7.85 -2.39 -0.02 0.65 16 30 H 0.05 0.67 8.08 -2.39 -0.02 0.65 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.60 6.34 -2.38 -0.02 1.58 16 33 H 0.10 1.63 7.85 -2.39 -0.02 1.61 16 34 H 0.09 2.06 7.13 -2.39 -0.02 2.04 16 35 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.13 4.74 7.59 -2.91 -0.02 4.72 16 37 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.11 5.80 6.16 -2.91 -0.02 5.78 16 39 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 40 H 0.11 5.03 7.60 -2.91 -0.02 5.00 16 41 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 2.31 7.12 -2.39 -0.02 2.29 16 43 H 0.04 1.61 7.72 -2.39 -0.02 1.60 16 44 H 0.04 1.42 8.10 -2.38 -0.02 1.40 16 45 H 0.05 1.93 4.89 -2.39 -0.01 1.92 16 Total: -1.00 -66.26 366.83 0.57 -65.69 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.99 Total: 31.23 kcal Atomic # 6 Polarization: -76.00 SS G_CDS: 4.56 Total: -71.44 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -1.15 Total: -70.22 kcal Atomic # 8 Polarization: -88.77 SS G_CDS: -5.54 Total: -94.31 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 16 Polarization: 99.64 SS G_CDS: -0.32 Total: 99.32 kcal Total: -66.26 0.57 -65.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590762055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.636 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds