Wall clock time and date at job start Tue Mar 31 2020 23:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00212 * 2 1 4 4 H 1.08999 * 109.46004 * 30.02037 * 3 2 1 5 5 C 1.53360 * 109.40465 * 270.11988 * 3 2 1 6 6 C 1.53186 * 109.14584 * 178.67881 * 5 3 2 7 7 N 1.46925 * 108.89447 * 54.57773 * 6 5 3 8 8 S 1.65605 * 120.63112 * 126.29794 * 7 6 5 9 9 O 1.42101 * 106.40196 * 203.54140 * 8 7 6 10 10 O 1.42102 * 106.39805 * 336.45957 * 8 7 6 11 11 C 1.76198 * 107.22010 * 89.99836 * 8 7 6 12 12 C 1.38651 * 119.87699 * 90.00023 * 11 8 7 13 13 C 1.38610 * 120.50680 * 179.97438 * 12 11 8 14 14 C 1.37644 * 120.24370 * 0.02977 * 13 12 11 15 15 C 1.40696 * 119.74469 * 359.97438 * 14 13 12 16 16 C 1.41398 * 120.24195 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00252 * 155.26826 * 16 15 14 18 18 C 1.39942 * 119.99998 * 335.25662 * 16 15 14 19 19 N 1.30827 * 120.00068 * 342.26482 * 18 16 15 20 20 Si 1.86803 * 120.00109 * 162.25883 * 18 16 15 21 21 H 1.48496 * 109.46717 * 90.00329 * 20 18 16 22 22 H 1.48497 * 109.46972 * 210.00282 * 20 18 16 23 23 H 1.48500 * 109.46993 * 330.00614 * 20 18 16 24 24 C 1.37593 * 119.87520 * 269.72513 * 11 8 7 25 25 C 1.46919 * 118.74295 * 306.31806 * 7 6 5 26 26 C 1.53039 * 109.46279 * 149.99891 * 3 2 1 27 27 H 1.09003 * 109.49499 * 61.42123 * 26 3 2 28 28 C 1.52996 * 109.49581 * 301.32090 * 26 3 2 29 29 H 1.08999 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47037 * 300.00659 * 1 2 3 31 31 H 1.09003 * 109.46838 * 60.00629 * 1 2 3 32 32 H 1.08997 * 109.68507 * 58.71230 * 5 3 2 33 33 H 1.08995 * 109.46920 * 298.51493 * 5 3 2 34 34 H 1.09000 * 109.59239 * 294.71657 * 6 5 3 35 35 H 1.09010 * 109.58420 * 174.43576 * 6 5 3 36 36 H 1.08007 * 119.74727 * 359.97438 * 12 11 8 37 37 H 1.08001 * 119.87830 * 180.02562 * 13 12 11 38 38 H 1.08004 * 120.12500 * 180.02562 * 14 13 12 39 39 H 0.97000 * 120.00238 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.13175 * 0.02562 * 24 11 8 41 41 H 1.08995 * 109.59206 * 173.39847 * 25 7 6 42 42 H 1.09002 * 109.58571 * 293.68384 * 25 7 6 43 43 H 1.09000 * 109.47406 * 300.16618 * 28 26 3 44 44 H 1.09005 * 109.47234 * 60.16212 * 28 26 3 45 45 H 1.09002 * 109.47073 * 180.16104 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9992 0.5142 5 6 2.2147 1.7722 -1.4465 6 6 2.8072 3.1848 -1.4396 7 7 4.0303 3.1838 -0.6255 8 16 5.4575 3.7500 -1.2461 9 8 6.4943 3.1336 -0.4949 10 8 5.3516 3.6416 -2.6590 11 6 5.5369 5.4725 -0.8838 12 6 6.1177 5.9033 0.2992 13 6 6.1876 7.2552 0.5971 14 6 5.6793 8.1858 -0.2805 15 6 5.0877 7.7601 -1.4839 16 6 4.5617 8.7070 -2.3929 17 1 4.4790 8.4611 -3.4413 18 6 4.1480 9.9626 -1.9339 19 7 3.9166 10.1498 -0.6600 20 14 3.9263 11.3715 -3.1403 21 1 2.5309 11.3732 -3.6482 22 1 4.2051 12.6588 -2.4546 23 1 4.8667 11.2023 -4.2771 24 6 5.0275 6.3852 -1.7785 25 6 3.9634 2.6705 0.7495 26 6 3.3592 1.2630 0.7215 27 1 4.0331 0.5883 0.1934 28 6 3.1566 0.7656 2.1541 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.2577 1.7815 -1.9680 33 1 2.8996 1.0928 -1.9540 34 1 2.0855 3.8818 -1.0138 35 1 3.0474 3.4852 -2.4596 36 1 6.5187 5.1800 0.9939 37 1 6.6426 7.5796 1.5214 38 1 5.7352 9.2387 -0.0466 39 1 3.6302 11.0202 -0.3418 40 1 4.5792 6.0478 -2.7013 41 1 4.9667 2.6292 1.1734 42 1 3.3378 3.3269 1.3545 43 1 2.4815 1.4401 2.6808 44 1 2.7267 -0.2359 2.1337 45 1 4.1172 0.7383 2.6685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590762056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:59 Heat of formation + Delta-G solvation = -110.681441 kcal Electronic energy + Delta-G solvation = -28120.099052 eV Core-core repulsion = 24228.849879 eV Total energy + Delta-G solvation = -3891.249173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.48930 -37.65188 -36.80632 -36.75082 -35.31758 -33.86586 -33.15810 -31.29123 -30.09560 -29.80101 -27.18827 -26.50074 -25.50215 -23.81595 -22.30623 -21.83738 -20.99664 -20.33664 -18.72389 -17.92786 -17.26753 -16.56127 -15.96227 -15.90079 -15.49016 -15.27847 -15.07625 -14.78106 -14.47748 -14.10179 -13.70115 -13.46047 -13.41038 -13.33791 -12.87133 -12.62046 -12.50946 -12.22675 -11.95786 -11.92908 -11.68237 -11.61805 -11.52568 -11.42387 -11.37164 -11.15869 -11.06255 -11.01882 -10.92027 -10.79782 -10.64257 -10.46127 -9.80075 -9.63465 -9.60187 -9.36604 -8.84292 -8.04759 -7.72235 -6.95103 -4.55694 0.94746 2.17767 2.61550 2.98335 3.00079 3.07087 3.39954 3.60719 3.80948 4.25360 4.38587 4.54724 4.62302 4.81541 4.92088 5.06411 5.12070 5.16407 5.17868 5.29090 5.33993 5.39167 5.44550 5.49311 5.61264 5.69423 5.77554 5.79024 5.89674 6.02161 6.04576 6.09902 6.15637 6.23885 6.29840 6.62187 6.66237 6.74825 6.91202 7.02487 7.06416 7.20078 7.36423 7.70822 7.78729 7.92212 8.38091 8.64851 8.69759 10.00451 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.003279 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.664458 B = 8537.065367 C = 9158.668387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.095 3.905 4 H 0.064 0.936 5 C -0.152 4.152 6 C 0.122 3.878 7 N -1.001 6.001 8 S 2.687 3.313 9 O -0.972 6.972 10 O -0.969 6.969 11 C -0.631 4.631 12 C -0.148 4.148 13 C -0.120 4.120 14 C -0.119 4.119 15 C 0.092 3.908 16 C -0.461 4.461 17 H 0.083 0.917 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.126 4.126 25 C 0.126 3.874 26 C -0.099 4.099 27 H 0.083 0.917 28 C -0.143 4.143 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.283 0.717 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 -12.182 3.999 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.038 3.962 4 H 0.082 0.918 5 C -0.192 4.192 6 C -0.004 4.004 7 N -0.837 5.837 8 S 2.784 3.216 9 O -0.963 6.963 10 O -0.959 6.959 11 C -0.723 4.723 12 C -0.169 4.169 13 C -0.140 4.140 14 C -0.138 4.138 15 C 0.089 3.911 16 C -0.490 4.490 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.419 5.419 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.147 4.147 25 C 0.001 3.999 26 C -0.120 4.120 27 H 0.102 0.898 28 C -0.201 4.201 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.141 -12.688 3.706 14.575 hybrid contribution -0.725 1.725 -0.142 1.877 sum -6.865 -10.963 3.564 13.417 Atomic orbital electron populations 1.22759 0.81449 1.02422 0.99929 1.87899 1.19274 1.28006 1.95020 1.22203 0.94539 0.84246 0.95236 0.91838 1.22440 1.01883 0.97441 0.97397 1.21371 0.86312 0.96383 0.96329 1.57787 1.25848 1.77649 1.22428 1.01785 0.71993 0.74747 0.73027 1.93496 1.53696 1.76186 1.72878 1.93511 1.85788 1.87331 1.29312 1.29808 1.15412 1.21832 1.05276 1.20066 1.05012 0.96031 0.95800 1.20810 1.01092 0.93280 0.98808 1.21630 0.97567 0.99210 0.95418 1.17678 0.89815 0.91048 0.92574 1.19609 1.36392 0.97050 0.95954 0.89920 1.25931 0.92573 0.99974 0.95780 1.69780 1.31942 1.24889 1.15334 0.86265 0.79694 0.79503 0.81091 1.19331 1.19992 1.18273 1.20761 1.02627 0.93225 0.98099 1.21479 1.02992 0.93185 0.82275 1.21547 0.95879 0.97464 0.97078 0.89821 1.21717 1.01909 1.01680 0.94755 0.89918 0.94158 0.94105 0.90616 0.90520 0.91111 0.88307 0.87662 0.88374 0.85792 0.90585 0.87123 0.88264 0.91102 0.92750 0.91651 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.24 9.62 -35.23 -0.34 -4.58 16 3 C 0.10 1.05 2.03 -26.52 -0.05 1.00 16 4 H 0.06 0.65 7.79 -51.93 -0.40 0.24 16 5 C -0.15 -1.75 5.72 -26.45 -0.15 -1.90 16 6 C 0.12 1.62 6.46 -3.71 -0.02 1.60 16 7 N -1.00 -15.20 3.29 -113.53 -0.37 -15.57 16 8 S 2.69 51.08 5.73 -107.50 -0.62 50.46 16 9 O -0.97 -19.74 15.86 -57.17 -0.91 -20.64 16 10 O -0.97 -20.29 15.85 -57.17 -0.91 -21.20 16 11 C -0.63 -13.77 5.97 -39.66 -0.24 -14.01 16 12 C -0.15 -3.20 9.53 -39.29 -0.37 -3.58 16 13 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 14 C -0.12 -2.93 8.69 -38.87 -0.34 -3.27 16 15 C 0.09 2.37 5.57 -106.82 -0.60 1.77 16 16 C -0.46 -11.70 9.05 -37.74 -0.34 -12.04 16 17 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 18 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 19 N -0.79 -19.39 10.97 55.55 0.61 -18.78 16 20 Si 0.91 17.84 29.60 -169.99 -5.03 12.80 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 C -0.13 -2.99 9.26 -38.87 -0.36 -3.35 16 25 C 0.13 1.64 5.76 -3.71 -0.02 1.62 16 26 C -0.10 -1.15 2.62 -90.50 -0.24 -1.38 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 C -0.14 -1.37 9.04 37.16 0.34 -1.04 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.04 0.30 7.85 -51.93 -0.41 -0.11 16 32 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.39 6.92 -51.92 -0.36 1.03 16 36 H 0.11 2.04 7.60 -52.48 -0.40 1.65 16 37 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.11 6.18 -52.48 -0.32 2.79 16 39 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 40 H 0.11 2.51 7.60 -52.49 -0.40 2.11 16 41 H 0.10 1.31 6.91 -51.93 -0.36 0.95 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -29.86 373.61 -10.53 -40.40 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.81 Total: 6.10 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: -1.79 Total: -34.62 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.24 Total: -34.35 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -2.15 Total: -46.42 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 16 Polarization: 51.08 SS G_CDS: -0.62 Total: 50.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.86 -10.53 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590762056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.285 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds