Wall clock time and date at job start Tue Mar 31 2020 23:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00212 * 2 1 4 4 H 1.08999 * 109.46004 * 30.02037 * 3 2 1 5 5 C 1.53360 * 109.40465 * 270.11988 * 3 2 1 6 6 C 1.53186 * 109.14584 * 178.67881 * 5 3 2 7 7 N 1.46925 * 108.89447 * 54.57773 * 6 5 3 8 8 S 1.65605 * 120.63112 * 126.29794 * 7 6 5 9 9 O 1.42101 * 106.40196 * 203.54140 * 8 7 6 10 10 O 1.42102 * 106.39805 * 336.45957 * 8 7 6 11 11 C 1.76198 * 107.22010 * 89.99836 * 8 7 6 12 12 C 1.38651 * 119.87699 * 90.00023 * 11 8 7 13 13 C 1.38610 * 120.50680 * 179.97438 * 12 11 8 14 14 C 1.37644 * 120.24370 * 0.02977 * 13 12 11 15 15 C 1.40696 * 119.74469 * 359.97438 * 14 13 12 16 16 C 1.41398 * 120.24195 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00252 * 155.26826 * 16 15 14 18 18 C 1.39942 * 119.99998 * 335.25662 * 16 15 14 19 19 N 1.30827 * 120.00068 * 342.26482 * 18 16 15 20 20 Si 1.86803 * 120.00109 * 162.25883 * 18 16 15 21 21 H 1.48496 * 109.46717 * 90.00329 * 20 18 16 22 22 H 1.48497 * 109.46972 * 210.00282 * 20 18 16 23 23 H 1.48500 * 109.46993 * 330.00614 * 20 18 16 24 24 C 1.37593 * 119.87520 * 269.72513 * 11 8 7 25 25 C 1.46919 * 118.74295 * 306.31806 * 7 6 5 26 26 C 1.53039 * 109.46279 * 149.99891 * 3 2 1 27 27 H 1.09003 * 109.49499 * 61.42123 * 26 3 2 28 28 C 1.52996 * 109.49581 * 301.32090 * 26 3 2 29 29 H 1.08999 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47037 * 300.00659 * 1 2 3 31 31 H 1.09003 * 109.46838 * 60.00629 * 1 2 3 32 32 H 1.08997 * 109.68507 * 58.71230 * 5 3 2 33 33 H 1.08995 * 109.46920 * 298.51493 * 5 3 2 34 34 H 1.09000 * 109.59239 * 294.71657 * 6 5 3 35 35 H 1.09010 * 109.58420 * 174.43576 * 6 5 3 36 36 H 1.08007 * 119.74727 * 359.97438 * 12 11 8 37 37 H 1.08001 * 119.87830 * 180.02562 * 13 12 11 38 38 H 1.08004 * 120.12500 * 180.02562 * 14 13 12 39 39 H 0.97000 * 120.00238 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.13175 * 0.02562 * 24 11 8 41 41 H 1.08995 * 109.59206 * 173.39847 * 25 7 6 42 42 H 1.09002 * 109.58571 * 293.68384 * 25 7 6 43 43 H 1.09000 * 109.47406 * 300.16618 * 28 26 3 44 44 H 1.09005 * 109.47234 * 60.16212 * 28 26 3 45 45 H 1.09002 * 109.47073 * 180.16104 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9992 0.5142 5 6 2.2147 1.7722 -1.4465 6 6 2.8072 3.1848 -1.4396 7 7 4.0303 3.1838 -0.6255 8 16 5.4575 3.7500 -1.2461 9 8 6.4943 3.1336 -0.4949 10 8 5.3516 3.6416 -2.6590 11 6 5.5369 5.4725 -0.8838 12 6 6.1177 5.9033 0.2992 13 6 6.1876 7.2552 0.5971 14 6 5.6793 8.1858 -0.2805 15 6 5.0877 7.7601 -1.4839 16 6 4.5617 8.7070 -2.3929 17 1 4.4790 8.4611 -3.4413 18 6 4.1480 9.9626 -1.9339 19 7 3.9166 10.1498 -0.6600 20 14 3.9263 11.3715 -3.1403 21 1 2.5309 11.3732 -3.6482 22 1 4.2051 12.6588 -2.4546 23 1 4.8667 11.2023 -4.2771 24 6 5.0275 6.3852 -1.7785 25 6 3.9634 2.6705 0.7495 26 6 3.3592 1.2630 0.7215 27 1 4.0331 0.5883 0.1934 28 6 3.1566 0.7656 2.1541 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.2577 1.7815 -1.9680 33 1 2.8996 1.0928 -1.9540 34 1 2.0855 3.8818 -1.0138 35 1 3.0474 3.4852 -2.4596 36 1 6.5187 5.1800 0.9939 37 1 6.6426 7.5796 1.5214 38 1 5.7352 9.2387 -0.0466 39 1 3.6302 11.0202 -0.3418 40 1 4.5792 6.0478 -2.7013 41 1 4.9667 2.6292 1.1734 42 1 3.3378 3.3269 1.3545 43 1 2.4815 1.4401 2.6808 44 1 2.7267 -0.2359 2.1337 45 1 4.1172 0.7383 2.6685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590762056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:58 Heat of formation + Delta-G solvation = -128.748910 kcal Electronic energy + Delta-G solvation = -28120.882516 eV Core-core repulsion = 24228.849879 eV Total energy + Delta-G solvation = -3892.032637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.40102 -39.44955 -38.36914 -37.72252 -36.93363 -35.67298 -34.11048 -32.30066 -31.91865 -31.58563 -27.93054 -27.38093 -27.31039 -24.82421 -23.63934 -23.23946 -22.78039 -21.30166 -20.29252 -19.41013 -18.67879 -17.74946 -17.46051 -17.20668 -16.86750 -16.52662 -16.32224 -15.96649 -15.85436 -15.24484 -15.16808 -14.98339 -14.58084 -14.31751 -14.24402 -13.94366 -13.69045 -13.55357 -13.33577 -13.29959 -13.10232 -13.04256 -12.88794 -12.83007 -12.79796 -12.61808 -12.56102 -12.22597 -12.11233 -11.91473 -11.77170 -11.57665 -11.41019 -11.28640 -11.13994 -10.40593 -10.09461 -9.82145 -9.56514 -8.73866 -6.45639 -0.57476 0.39561 0.83927 1.37371 1.44200 1.52184 2.01409 2.17312 2.55917 2.73614 2.82532 3.31754 3.49000 3.60717 3.81674 3.97779 4.03935 4.16790 4.29528 4.33261 4.42606 4.45074 4.53573 4.58152 4.60127 4.70711 4.71443 4.80752 4.83151 4.88010 4.91102 4.93257 5.04862 5.06596 5.14640 5.17854 5.19954 5.31561 5.39946 5.44403 5.55357 5.63659 5.88002 5.93105 6.09534 6.32240 6.51806 6.79141 6.83981 8.24109 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.003279 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.664458 B = 8537.065367 C = 9158.668387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.097 3.903 4 H 0.077 0.923 5 C -0.148 4.148 6 C 0.114 3.886 7 N -0.994 5.994 8 S 2.710 3.290 9 O -0.983 6.983 10 O -0.991 6.991 11 C -0.638 4.638 12 C -0.149 4.149 13 C -0.122 4.122 14 C -0.142 4.142 15 C 0.064 3.936 16 C -0.498 4.498 17 H 0.078 0.922 18 C 0.039 3.961 19 N -0.820 5.820 20 Si 0.981 3.019 21 H -0.260 1.260 22 H -0.264 1.264 23 H -0.262 1.262 24 C -0.145 4.145 25 C 0.118 3.882 26 C -0.098 4.098 27 H 0.069 0.931 28 C -0.137 4.137 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.292 0.708 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 -12.789 4.919 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.039 3.961 4 H 0.095 0.905 5 C -0.187 4.187 6 C -0.011 4.011 7 N -0.833 5.833 8 S 2.806 3.194 9 O -0.973 6.973 10 O -0.981 6.981 11 C -0.726 4.726 12 C -0.170 4.170 13 C -0.141 4.141 14 C -0.162 4.162 15 C 0.061 3.939 16 C -0.527 4.527 17 H 0.097 0.903 18 C -0.176 4.176 19 N -0.446 5.446 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.188 1.188 23 H -0.186 1.186 24 C -0.166 4.166 25 C -0.006 4.006 26 C -0.119 4.119 27 H 0.088 0.912 28 C -0.195 4.195 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.325 -13.276 4.642 15.857 hybrid contribution -0.388 1.760 -0.357 1.837 sum -7.713 -11.516 4.285 14.507 Atomic orbital electron populations 1.22956 0.79892 1.03608 1.00730 1.87881 1.21007 1.27812 1.95074 1.22156 0.94524 0.84753 0.94627 0.90493 1.22413 1.02363 0.95647 0.98274 1.21580 0.85709 0.98164 0.95605 1.57553 1.25237 1.76800 1.23737 1.01056 0.72605 0.73419 0.72370 1.93473 1.55134 1.75709 1.73016 1.93478 1.86474 1.87168 1.30973 1.30301 1.14000 1.23653 1.04689 1.20450 1.04140 0.96344 0.96067 1.21144 1.00243 0.93337 0.99357 1.21640 0.99146 0.99239 0.96151 1.18031 0.90485 0.92052 0.93337 1.19848 1.38268 0.98650 0.95938 0.90339 1.26716 0.91651 1.01746 0.97524 1.69810 1.32019 1.25932 1.16806 0.85209 0.79736 0.76333 0.78549 1.18452 1.18826 1.18551 1.20838 1.03823 0.93164 0.98816 1.21754 1.03506 0.94458 0.80905 1.21519 0.95947 0.96033 0.98380 0.91241 1.21680 1.02525 1.01858 0.93455 0.88663 0.93143 0.93481 0.88575 0.91756 0.89671 0.89455 0.85101 0.85492 0.86905 0.89711 0.87217 0.88549 0.89346 0.91577 0.91572 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.55 16 2 O -0.40 -7.92 9.62 -148.98 -1.43 -9.36 16 3 C 0.10 1.92 2.03 30.73 0.06 1.98 16 4 H 0.08 1.32 7.79 -2.39 -0.02 1.30 16 5 C -0.15 -3.15 5.72 30.78 0.18 -2.98 16 6 C 0.11 2.93 6.46 86.36 0.56 3.49 16 7 N -0.99 -29.18 3.29 -513.08 -1.69 -30.86 16 8 S 2.71 102.16 5.73 -56.49 -0.32 101.83 16 9 O -0.98 -39.03 15.86 -128.00 -2.03 -41.05 16 10 O -0.99 -41.86 15.85 -128.00 -2.03 -43.88 16 11 C -0.64 -27.85 5.97 22.22 0.13 -27.71 16 12 C -0.15 -6.33 9.53 22.46 0.21 -6.12 16 13 C -0.12 -5.39 10.02 22.22 0.22 -5.16 16 14 C -0.14 -7.18 8.69 22.73 0.20 -6.98 16 15 C 0.06 3.39 5.57 -21.29 -0.12 3.28 16 16 C -0.50 -26.16 9.05 23.46 0.21 -25.95 16 17 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 18 C 0.04 1.90 5.14 85.26 0.44 2.34 16 19 N -0.82 -40.56 10.97 21.83 0.24 -40.32 16 20 Si 0.98 36.66 29.60 68.60 2.03 38.69 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 22 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 C -0.15 -7.11 9.26 22.73 0.21 -6.90 16 25 C 0.12 2.85 5.76 86.37 0.50 3.35 16 26 C -0.10 -2.09 2.62 -10.72 -0.03 -2.11 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 C -0.14 -2.31 9.04 71.98 0.65 -1.66 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.05 0.57 7.85 -2.39 -0.02 0.55 16 32 H 0.10 1.66 7.85 -2.39 -0.02 1.64 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.09 2.45 6.92 -2.38 -0.02 2.43 16 36 H 0.13 4.81 7.60 -2.91 -0.02 4.79 16 37 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.11 5.85 6.18 -2.91 -0.02 5.83 16 39 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 40 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 41 H 0.10 2.39 6.91 -2.39 -0.02 2.37 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.12 7.65 -2.38 -0.02 1.10 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -64.70 373.61 0.40 -64.30 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.98 Total: 30.24 kcal Atomic # 6 Polarization: -74.24 SS G_CDS: 4.65 Total: -69.58 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.45 Total: -71.19 kcal Atomic # 8 Polarization: -88.80 SS G_CDS: -5.49 Total: -94.29 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 16 Polarization: 102.16 SS G_CDS: -0.32 Total: 101.83 kcal Total: -64.70 0.40 -64.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590762056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.444 kcal (2) G-P(sol) polarization free energy of solvation -64.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds