Wall clock time and date at job start Tue Mar 31 2020 23:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00474 * 2 1 4 4 H 1.09007 * 109.46053 * 330.03045 * 3 2 1 5 5 C 1.53042 * 109.45953 * 89.99475 * 3 2 1 6 6 C 1.53194 * 109.31205 * 181.37348 * 5 3 2 7 7 N 1.46925 * 108.77941 * 305.37133 * 6 5 3 8 8 S 1.65597 * 120.63113 * 233.33663 * 7 6 5 9 9 O 1.42101 * 106.40315 * 203.53762 * 8 7 6 10 10 O 1.42105 * 106.40295 * 336.45518 * 8 7 6 11 11 C 1.76197 * 107.22288 * 89.99530 * 8 7 6 12 12 C 1.38657 * 119.87226 * 89.99726 * 11 8 7 13 13 C 1.38623 * 120.49976 * 179.97438 * 12 11 8 14 14 C 1.37644 * 120.24638 * 359.97438 * 13 12 11 15 15 C 1.40698 * 119.74439 * 0.02562 * 14 13 12 16 16 C 1.41393 * 120.24096 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00122 * 155.23171 * 16 15 14 18 18 C 1.39944 * 119.99997 * 335.22772 * 16 15 14 19 19 N 1.30824 * 119.99803 * 342.28757 * 18 16 15 20 20 Si 1.86799 * 119.99977 * 162.29264 * 18 16 15 21 21 H 1.48502 * 109.47176 * 60.00006 * 20 18 16 22 22 H 1.48502 * 109.47256 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47143 * 299.99721 * 20 18 16 24 24 C 1.37600 * 119.87823 * 269.72635 * 11 8 7 25 25 C 1.46922 * 118.73736 * 53.60323 * 7 6 5 26 26 C 1.53036 * 109.45267 * 210.06202 * 3 2 1 27 27 H 1.08999 * 109.49878 * 298.57143 * 26 3 2 28 28 C 1.52999 * 109.49931 * 58.67147 * 26 3 2 29 29 H 1.08996 * 109.47555 * 59.99942 * 1 2 3 30 30 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47476 * 300.00009 * 1 2 3 32 32 H 1.09005 * 109.49175 * 61.42992 * 5 3 2 33 33 H 1.08995 * 109.50528 * 301.32976 * 5 3 2 34 34 H 1.09006 * 109.58558 * 185.57957 * 6 5 3 35 35 H 1.09000 * 109.58462 * 65.15884 * 6 5 3 36 36 H 1.08000 * 119.75290 * 359.96060 * 12 11 8 37 37 H 1.07996 * 119.87337 * 180.02562 * 13 12 11 38 38 H 1.07993 * 120.12217 * 180.02562 * 14 13 12 39 39 H 0.97006 * 119.99637 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.12424 * 0.02562 * 24 11 8 41 41 H 1.09002 * 109.58220 * 66.18517 * 25 7 6 42 42 H 1.09008 * 109.58566 * 186.60365 * 25 7 6 43 43 H 1.09000 * 109.47204 * 59.99727 * 28 26 3 44 44 H 1.08992 * 109.47376 * 180.02562 * 28 26 3 45 45 H 1.09002 * 109.46705 * 299.99949 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3446 1.9994 -0.5134 5 6 2.2175 1.7712 1.4430 6 6 2.8089 3.1844 1.4392 7 7 4.0312 3.1834 0.6239 8 16 5.4574 3.7559 1.2407 9 8 6.2527 4.1363 0.1262 10 8 5.1108 4.6500 2.2895 11 6 6.2814 2.3955 1.9988 12 6 7.1536 1.6150 1.2553 13 6 7.8092 0.5420 1.8387 14 6 7.6006 0.2401 3.1653 15 6 6.7177 1.0251 3.9294 16 6 6.4961 0.7248 5.2932 17 1 6.1686 1.4997 5.9705 18 6 6.7010 -0.5765 5.7654 19 7 6.7549 -1.5768 4.9239 20 14 6.8975 -0.8854 7.5971 21 1 5.6751 -0.4337 8.3092 22 1 7.1007 -2.3370 7.8354 23 1 8.0723 -0.1311 8.1031 24 6 6.0612 2.1148 3.3278 25 6 3.9627 2.6703 -0.7512 26 6 3.3585 1.2629 -0.7229 27 1 4.0328 0.5880 -0.1957 28 6 3.1544 0.7659 -2.1554 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.9027 1.0915 1.9497 33 1 1.2602 1.7789 1.9640 34 1 3.0505 3.4821 2.4596 35 1 2.0868 3.8815 1.0142 36 1 7.3234 1.8448 0.2138 37 1 8.4867 -0.0589 1.2503 38 1 8.1127 -0.5961 3.6179 39 1 6.8966 -2.4789 5.2512 40 1 5.3844 2.7264 3.9060 41 1 3.3346 3.3256 -1.3547 42 1 4.9657 2.6290 -1.1761 43 1 2.4811 1.4422 -2.6822 44 1 4.1149 0.7354 -2.6697 45 1 2.7218 -0.2344 -2.1348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590762058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:06 Heat of formation + Delta-G solvation = -110.122465 kcal Electronic energy + Delta-G solvation = -28682.385811 eV Core-core repulsion = 24791.160877 eV Total energy + Delta-G solvation = -3891.224934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.41192 -37.62113 -36.76898 -36.71008 -35.32359 -33.83526 -33.09160 -31.22059 -30.06497 -29.77684 -27.09861 -26.44148 -25.47145 -23.77154 -22.22740 -21.82425 -20.97242 -20.18585 -18.67959 -17.97896 -17.22141 -16.51066 -15.95332 -15.86836 -15.39992 -15.23206 -15.00502 -14.69152 -14.44070 -14.02682 -13.64891 -13.46169 -13.33042 -13.27947 -12.81667 -12.57536 -12.48422 -12.16889 -11.92453 -11.86750 -11.63146 -11.58787 -11.45983 -11.40342 -11.35340 -11.14927 -11.00946 -10.94029 -10.89436 -10.76440 -10.61641 -10.34314 -9.77254 -9.60903 -9.48359 -9.33877 -8.83713 -8.01292 -7.69087 -6.91728 -4.52753 0.96115 2.20704 2.65210 2.99838 3.01916 3.08878 3.42227 3.70545 3.83253 4.27042 4.42495 4.62411 4.68664 4.89045 4.97767 5.09966 5.18666 5.23602 5.27238 5.34392 5.41127 5.42217 5.53580 5.56764 5.66109 5.68099 5.77866 5.86038 5.97361 6.05191 6.13095 6.18454 6.28193 6.33383 6.41429 6.64752 6.68172 6.77805 6.93392 7.05384 7.20881 7.23104 7.39266 7.73914 7.81459 7.95279 8.40909 8.67898 8.72793 10.03767 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.004407 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.255026 B = 6352.144187 C = 7501.015436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.101 3.899 4 H 0.058 0.942 5 C -0.160 4.160 6 C 0.128 3.872 7 N -1.001 6.001 8 S 2.686 3.314 9 O -0.973 6.973 10 O -0.970 6.970 11 C -0.630 4.630 12 C -0.147 4.147 13 C -0.120 4.120 14 C -0.118 4.118 15 C 0.093 3.907 16 C -0.461 4.461 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.911 3.089 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.125 4.125 25 C 0.132 3.868 26 C -0.106 4.106 27 H 0.091 0.909 28 C -0.142 4.142 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.284 0.716 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 2.140 -9.188 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.043 3.957 4 H 0.076 0.924 5 C -0.199 4.199 6 C 0.002 3.998 7 N -0.837 5.837 8 S 2.783 3.217 9 O -0.963 6.963 10 O -0.960 6.960 11 C -0.722 4.722 12 C -0.168 4.168 13 C -0.140 4.140 14 C -0.137 4.137 15 C 0.090 3.910 16 C -0.491 4.491 17 H 0.100 0.900 18 C -0.142 4.142 19 N -0.419 5.419 20 Si 0.735 3.265 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.147 4.147 25 C 0.006 3.994 26 C -0.127 4.127 27 H 0.109 0.891 28 C -0.200 4.200 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.802 2.627 -9.263 13.740 hybrid contribution -0.089 -0.961 1.126 1.483 sum -9.891 1.666 -8.136 12.916 Atomic orbital electron populations 1.22744 0.81661 1.02459 0.99627 1.87950 1.19060 1.27865 1.94959 1.22060 0.94284 0.84202 0.95165 0.92351 1.22460 1.02194 0.97672 0.97594 1.21325 0.86032 0.96344 0.96065 1.57843 1.24314 1.80161 1.21401 1.01830 0.72107 0.74689 0.73033 1.93501 1.67940 1.82087 1.52807 1.93517 1.83323 1.62088 1.57091 1.29779 1.15520 1.21328 1.05594 1.20049 1.01254 0.97597 0.97902 1.20803 1.00154 0.97127 0.95870 1.21622 0.97906 1.00986 0.93224 1.17660 0.89519 0.90461 0.93378 1.19576 1.40344 0.95091 0.94059 0.89997 1.25921 0.92116 0.95672 1.00521 1.69777 1.34365 1.00622 1.37088 0.86312 0.80201 0.77902 0.82072 1.18840 1.20247 1.18685 1.20739 1.01444 1.00662 0.91818 1.21435 1.02703 0.93293 0.81943 1.21624 0.96338 0.97656 0.97034 0.89052 1.21706 1.01714 1.01721 0.94818 0.94395 0.89911 0.94185 0.89524 0.90841 0.88588 0.91390 0.87745 0.88435 0.85835 0.90534 0.87224 0.91251 0.88562 0.93056 0.92282 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -4.96 9.62 -35.23 -0.34 -5.29 16 3 C 0.10 1.23 2.02 -26.69 -0.05 1.17 16 4 H 0.06 0.61 7.79 -51.93 -0.40 0.20 16 5 C -0.16 -2.09 5.70 -26.61 -0.15 -2.25 16 6 C 0.13 1.70 6.37 -3.71 -0.02 1.68 16 7 N -1.00 -15.16 3.29 -113.52 -0.37 -15.54 16 8 S 2.69 51.02 5.69 -107.50 -0.61 50.41 16 9 O -0.97 -19.71 15.98 -57.17 -0.91 -20.62 16 10 O -0.97 -20.27 15.98 -57.17 -0.91 -21.18 16 11 C -0.63 -13.78 5.97 -39.66 -0.24 -14.02 16 12 C -0.15 -3.19 9.53 -39.28 -0.37 -3.57 16 13 C -0.12 -2.71 10.02 -39.66 -0.40 -3.10 16 14 C -0.12 -2.93 8.70 -38.87 -0.34 -3.27 16 15 C 0.09 2.40 5.57 -106.83 -0.60 1.81 16 16 C -0.46 -11.81 9.05 -37.74 -0.34 -12.15 16 17 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 18 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -19.65 10.97 55.55 0.61 -19.04 16 20 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.13 -2.99 9.26 -38.87 -0.36 -3.35 16 25 C 0.13 1.71 5.66 -3.71 -0.02 1.69 16 26 C -0.11 -1.36 2.62 -90.50 -0.24 -1.59 16 27 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 28 C -0.14 -1.49 9.04 37.16 0.34 -1.16 16 29 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.35 7.85 -51.93 -0.41 -0.06 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 34 H 0.10 1.36 7.13 -51.93 -0.37 0.99 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 2.04 7.60 -52.49 -0.40 1.65 16 37 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.14 6.18 -52.49 -0.32 2.81 16 39 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 40 H 0.11 2.51 7.60 -52.49 -0.40 2.11 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.28 7.12 -51.92 -0.37 0.91 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.73 7.65 -51.93 -0.40 0.33 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -30.10 374.00 -10.56 -40.66 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.83 Total: 6.90 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: -1.79 Total: -34.98 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.24 Total: -34.58 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -2.17 Total: -47.10 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 51.02 SS G_CDS: -0.61 Total: 50.41 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.10 -10.56 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590762058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.465 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds