Wall clock time and date at job start Tue Mar 31 2020 23:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.67595 * 2 1 4 4 C 1.55229 * 110.51770 * 237.07839 * 2 1 3 5 5 C 1.54810 * 101.98718 * 278.38501 * 4 2 1 6 6 H 1.08998 * 110.49166 * 98.00588 * 5 4 2 7 7 C 1.53006 * 110.48524 * 220.51947 * 5 4 2 8 8 N 1.46503 * 109.47071 * 291.75136 * 7 5 4 9 9 S 1.65592 * 119.99950 * 165.00313 * 8 7 5 10 10 O 1.42104 * 106.40369 * 311.45655 * 9 8 7 11 11 O 1.42098 * 106.40415 * 178.53898 * 9 8 7 12 12 C 1.76202 * 107.22079 * 64.99614 * 9 8 7 13 13 C 1.38647 * 119.87892 * 270.02320 * 12 9 8 14 14 C 1.38607 * 120.50445 * 179.97438 * 13 12 9 15 15 C 1.37641 * 120.24584 * 0.02562 * 14 13 12 16 16 C 1.40695 * 119.74695 * 359.97438 * 15 14 13 17 17 C 1.41394 * 120.24711 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00310 * 150.21911 * 17 16 15 19 19 C 1.39944 * 119.99688 * 330.21157 * 17 16 15 20 20 N 1.30830 * 119.99776 * 161.72481 * 19 17 16 21 21 Si 1.86799 * 120.00396 * 341.73605 * 19 17 16 22 22 H 1.48499 * 109.47431 * 95.40595 * 21 19 17 23 23 H 1.48497 * 109.47077 * 215.40978 * 21 19 17 24 24 H 1.48504 * 109.46648 * 335.40669 * 21 19 17 25 25 C 1.37592 * 119.87287 * 90.00082 * 12 9 8 26 26 C 1.54101 * 104.30521 * 339.25771 * 5 4 2 27 27 H 1.09001 * 109.87372 * 117.32842 * 26 5 4 28 28 C 1.53000 * 109.87987 * 238.48165 * 26 5 4 29 29 O 1.43745 * 107.29085 * 357.90802 * 26 5 4 30 30 H 1.08998 * 109.46652 * 298.47895 * 1 2 3 31 31 H 1.08995 * 109.47509 * 58.48424 * 1 2 3 32 32 H 1.09000 * 109.47092 * 178.48251 * 1 2 3 33 33 H 1.08994 * 110.89236 * 160.24656 * 4 2 1 34 34 H 1.09001 * 111.02152 * 36.57211 * 4 2 1 35 35 H 1.09006 * 109.47166 * 171.75361 * 7 5 4 36 36 H 1.08999 * 109.46887 * 51.75275 * 7 5 4 37 37 H 0.96997 * 119.99946 * 344.99651 * 8 7 5 38 38 H 1.08001 * 119.74855 * 359.95654 * 13 12 9 39 39 H 1.08007 * 119.88166 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.12579 * 179.97438 * 15 14 13 41 41 H 0.96997 * 120.00055 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.13102 * 359.74700 * 25 12 9 43 43 H 1.09004 * 109.47103 * 60.00304 * 28 26 5 44 44 H 1.09001 * 109.46839 * 180.02562 * 28 26 5 45 45 H 1.08996 * 109.47069 * 299.99987 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0741 -0.7901 -1.2204 5 6 1.9800 -2.2534 -0.7239 6 1 1.0728 -2.7263 -1.0999 7 6 3.2147 -3.0464 -1.1572 8 7 3.2021 -3.2129 -2.6126 9 16 4.5749 -3.6963 -3.4026 10 8 5.6266 -2.8706 -2.9214 11 8 4.2324 -3.7959 -4.7781 12 6 4.9396 -5.3328 -2.8609 13 6 5.7528 -5.5293 -1.7552 14 6 6.0477 -6.8109 -1.3176 15 6 5.5353 -7.9043 -1.9783 16 6 4.7089 -7.7170 -3.1015 17 6 4.1764 -8.8326 -3.7879 18 1 3.2260 -8.7518 -4.2943 19 6 4.8811 -10.0414 -3.8111 20 7 4.2632 -11.1530 -4.1183 21 14 6.7038 -10.0681 -3.4034 22 1 6.8854 -10.4087 -1.9694 23 1 7.3842 -11.0858 -4.2439 24 1 7.2908 -8.7309 -3.6728 25 6 4.4160 -6.4110 -3.5365 26 6 1.9284 -2.1320 0.8115 27 1 0.9817 -2.5245 1.1827 28 6 3.0943 -2.9030 1.4338 29 8 2.0385 -0.7355 1.1336 30 1 -0.3632 0.4900 0.9033 31 1 -0.3634 0.5372 -0.8760 32 1 -0.3633 -1.0273 -0.0272 33 1 3.1079 -0.5165 -1.4310 34 1 1.4458 -0.6359 -2.0977 35 1 3.2036 -4.0260 -0.6793 36 1 4.1148 -2.5077 -0.8608 37 1 2.3897 -3.0402 -3.1136 38 1 6.1598 -4.6771 -1.2312 39 1 6.6820 -6.9523 -0.4549 40 1 5.7667 -8.9021 -1.6359 41 1 4.7515 -11.9909 -4.1341 42 1 3.7791 -6.2557 -4.3949 43 1 4.0365 -2.4913 1.0719 44 1 3.0512 -2.8130 2.5192 45 1 3.0256 -3.9541 1.1536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591331895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:25 Heat of formation + Delta-G solvation = -112.249950 kcal Electronic energy + Delta-G solvation = -27850.769783 eV Core-core repulsion = 23959.452594 eV Total energy + Delta-G solvation = -3891.317189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.33124 -37.96700 -36.82371 -35.80324 -35.43050 -33.82146 -32.78555 -32.04903 -30.76997 -30.20799 -28.73803 -25.77419 -25.42246 -24.58843 -22.43489 -21.21257 -20.95954 -20.09716 -19.21218 -18.12614 -17.12036 -16.72071 -16.34388 -16.23123 -15.60155 -15.55336 -15.35154 -14.90986 -14.68686 -14.45789 -13.86907 -13.36830 -13.24069 -13.10469 -12.91834 -12.86476 -12.65248 -12.29339 -12.23202 -12.12387 -11.91292 -11.88887 -11.72475 -11.67340 -11.51378 -11.47047 -11.08878 -10.98673 -10.89974 -10.83114 -10.74829 -10.38535 -10.05528 -9.84495 -9.80506 -9.44453 -9.19271 -8.32375 -7.92416 -7.12529 -4.68271 0.86119 1.86386 2.37268 2.96411 3.08891 3.17838 3.37961 3.61782 3.82239 4.05546 4.22258 4.26785 4.40698 4.54558 4.77709 4.82870 4.88593 5.00885 5.09065 5.13647 5.17904 5.24362 5.34214 5.44074 5.48634 5.57755 5.68523 5.72701 5.77457 5.79839 5.92449 5.92901 5.96424 6.05952 6.11243 6.16075 6.41405 6.53417 6.75836 6.82195 6.99895 7.10367 7.15100 7.34703 7.57547 7.73173 8.14009 8.38120 8.57471 9.89304 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.003083 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.755816 B = 9081.121206 C = 9459.779066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.070 3.930 3 H 0.101 0.899 4 C -0.147 4.147 5 C -0.125 4.125 6 H 0.091 0.909 7 C 0.125 3.875 8 N -1.121 6.121 9 S 2.690 3.310 10 O -0.971 6.971 11 O -0.969 6.969 12 C -0.625 4.625 13 C -0.159 4.159 14 C -0.092 4.092 15 C -0.198 4.198 16 C 0.073 3.927 17 C -0.443 4.443 18 H 0.095 0.905 19 C 0.084 3.916 20 N -0.800 5.800 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.243 1.243 25 C -0.102 4.102 26 C 0.082 3.918 27 H 0.070 0.930 28 C -0.164 4.164 29 O -0.368 6.368 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.414 0.586 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.288 0.712 42 H 0.119 0.881 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 15.355 8.272 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 H 0.119 0.881 4 C -0.185 4.185 5 C -0.145 4.145 6 H 0.110 0.890 7 C -0.001 4.001 8 N -0.879 5.879 9 S 2.785 3.215 10 O -0.961 6.961 11 O -0.959 6.959 12 C -0.716 4.716 13 C -0.180 4.180 14 C -0.111 4.111 15 C -0.217 4.217 16 C 0.069 3.931 17 C -0.471 4.471 18 H 0.113 0.887 19 C -0.136 4.136 20 N -0.423 5.423 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.213 1.213 24 H -0.166 1.166 25 C -0.123 4.123 26 C 0.023 3.977 27 H 0.088 0.912 28 C -0.221 4.221 29 O -0.288 6.288 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.247 0.753 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.137 0.863 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.959 15.638 7.886 18.203 hybrid contribution 0.121 -1.088 0.133 1.103 sum -4.838 14.550 8.020 17.304 Atomic orbital electron populations 1.22252 0.95609 1.02684 1.02488 1.23173 0.93647 0.96698 0.85225 0.88105 1.23333 1.03020 0.93769 0.98341 1.22765 0.99266 0.96573 0.95869 0.89040 1.21551 0.98707 1.00534 0.79314 1.55585 1.30482 1.85545 1.16313 1.01691 0.72504 0.74574 0.72776 1.93523 1.54192 1.66737 1.81659 1.93557 1.83486 1.87688 1.31200 1.29940 1.12610 1.20165 1.08915 1.20063 1.02982 0.96862 0.98101 1.20706 0.98797 0.92890 0.98689 1.21313 1.05069 0.97421 0.97945 1.17788 0.91224 0.92782 0.91282 1.19519 1.06647 0.92553 1.28394 0.88680 1.26163 1.01436 0.94389 0.91629 1.69677 1.38768 0.99503 1.34338 0.86374 0.81893 0.80014 0.78521 1.19392 1.21292 1.16617 1.20846 1.01429 0.91682 0.98358 1.22663 0.99103 0.83046 0.92872 0.91170 1.22122 0.98247 1.00213 1.01494 1.88936 1.84066 1.16621 1.39131 0.91887 0.91499 0.92150 0.89734 0.89966 0.90579 0.89766 0.75291 0.87046 0.87871 0.87607 0.90143 0.86284 0.91132 0.91885 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.39 37.16 0.35 -0.87 16 2 C 0.07 0.60 4.30 -25.55 -0.11 0.49 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 4 C -0.15 -1.27 6.06 -24.60 -0.15 -1.42 16 5 C -0.12 -1.14 2.69 -89.09 -0.24 -1.38 16 6 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 7 C 0.12 1.41 4.34 -4.04 -0.02 1.39 16 8 N -1.12 -14.10 5.84 -10.61 -0.06 -14.17 16 9 S 2.69 46.32 5.73 -107.50 -0.62 45.70 16 10 O -0.97 -18.37 16.74 -57.17 -0.96 -19.32 16 11 O -0.97 -19.16 17.27 -57.17 -0.99 -20.15 16 12 C -0.63 -12.52 5.94 -39.67 -0.24 -12.75 16 13 C -0.16 -3.11 9.53 -39.29 -0.37 -3.49 16 14 C -0.09 -1.85 10.02 -39.66 -0.40 -2.25 16 15 C -0.20 -4.50 7.18 -38.87 -0.28 -4.78 16 16 C 0.07 1.78 5.10 -106.83 -0.55 1.23 16 17 C -0.44 -11.47 9.57 -37.74 -0.36 -11.83 16 18 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 19 C 0.08 2.11 5.40 -17.34 -0.09 2.02 16 20 N -0.80 -20.46 13.93 55.55 0.77 -19.68 16 21 Si 0.91 19.93 24.52 -169.99 -4.17 15.76 16 22 H -0.27 -5.63 6.71 56.52 0.38 -5.25 16 23 H -0.29 -6.08 7.11 56.52 0.40 -5.67 16 24 H -0.24 -5.54 6.86 56.52 0.39 -5.15 16 25 C -0.10 -2.29 9.26 -38.87 -0.36 -2.65 16 26 C 0.08 0.78 3.45 -26.16 -0.09 0.68 16 27 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 28 C -0.16 -1.55 8.39 37.16 0.31 -1.24 16 29 O -0.37 -3.99 10.95 -35.23 -0.39 -4.37 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.43 7.28 -51.93 -0.38 0.05 16 33 H 0.08 0.82 7.80 -51.93 -0.41 0.41 16 34 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 35 H 0.08 0.85 6.53 -51.93 -0.34 0.51 16 36 H 0.08 0.99 6.54 -51.93 -0.34 0.65 16 37 H 0.41 4.25 8.65 -34.46 -0.30 3.95 16 38 H 0.11 1.93 7.60 -52.49 -0.40 1.53 16 39 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 40 H 0.11 2.37 4.73 -52.49 -0.25 2.12 16 41 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 42 H 0.12 2.57 7.61 -52.48 -0.40 2.17 16 43 H 0.07 0.70 6.81 -51.93 -0.35 0.35 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.70 6.76 -51.93 -0.35 0.35 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -30.65 367.81 -9.93 -40.57 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.48 Total: 6.95 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: -2.59 Total: -36.83 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.71 Total: -33.85 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -2.33 Total: -43.84 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.17 Total: 15.76 kcal Atomic # 16 Polarization: 46.32 SS G_CDS: -0.62 Total: 45.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.65 -9.93 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.676 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds