Wall clock time and date at job start Tue Mar 31 2020 23:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.67595 * 2 1 4 4 C 1.55229 * 110.51770 * 237.07839 * 2 1 3 5 5 C 1.54810 * 101.98718 * 278.38501 * 4 2 1 6 6 H 1.08998 * 110.49166 * 98.00588 * 5 4 2 7 7 C 1.53006 * 110.48524 * 220.51947 * 5 4 2 8 8 N 1.46503 * 109.47071 * 291.75136 * 7 5 4 9 9 S 1.65592 * 119.99950 * 165.00313 * 8 7 5 10 10 O 1.42104 * 106.40369 * 311.45655 * 9 8 7 11 11 O 1.42098 * 106.40415 * 178.53898 * 9 8 7 12 12 C 1.76202 * 107.22079 * 64.99614 * 9 8 7 13 13 C 1.38647 * 119.87892 * 270.02320 * 12 9 8 14 14 C 1.38607 * 120.50445 * 179.97438 * 13 12 9 15 15 C 1.37641 * 120.24584 * 0.02562 * 14 13 12 16 16 C 1.40695 * 119.74695 * 359.97438 * 15 14 13 17 17 C 1.41394 * 120.24711 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00310 * 150.21911 * 17 16 15 19 19 C 1.39944 * 119.99688 * 330.21157 * 17 16 15 20 20 N 1.30830 * 119.99776 * 161.72481 * 19 17 16 21 21 Si 1.86799 * 120.00396 * 341.73605 * 19 17 16 22 22 H 1.48499 * 109.47431 * 95.40595 * 21 19 17 23 23 H 1.48497 * 109.47077 * 215.40978 * 21 19 17 24 24 H 1.48504 * 109.46648 * 335.40669 * 21 19 17 25 25 C 1.37592 * 119.87287 * 90.00082 * 12 9 8 26 26 C 1.54101 * 104.30521 * 339.25771 * 5 4 2 27 27 H 1.09001 * 109.87372 * 117.32842 * 26 5 4 28 28 C 1.53000 * 109.87987 * 238.48165 * 26 5 4 29 29 O 1.43745 * 107.29085 * 357.90802 * 26 5 4 30 30 H 1.08998 * 109.46652 * 298.47895 * 1 2 3 31 31 H 1.08995 * 109.47509 * 58.48424 * 1 2 3 32 32 H 1.09000 * 109.47092 * 178.48251 * 1 2 3 33 33 H 1.08994 * 110.89236 * 160.24656 * 4 2 1 34 34 H 1.09001 * 111.02152 * 36.57211 * 4 2 1 35 35 H 1.09006 * 109.47166 * 171.75361 * 7 5 4 36 36 H 1.08999 * 109.46887 * 51.75275 * 7 5 4 37 37 H 0.96997 * 119.99946 * 344.99651 * 8 7 5 38 38 H 1.08001 * 119.74855 * 359.95654 * 13 12 9 39 39 H 1.08007 * 119.88166 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.12579 * 179.97438 * 15 14 13 41 41 H 0.96997 * 120.00055 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.13102 * 359.74700 * 25 12 9 43 43 H 1.09004 * 109.47103 * 60.00304 * 28 26 5 44 44 H 1.09001 * 109.46839 * 180.02562 * 28 26 5 45 45 H 1.08996 * 109.47069 * 299.99987 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0741 -0.7901 -1.2204 5 6 1.9800 -2.2534 -0.7239 6 1 1.0728 -2.7263 -1.0999 7 6 3.2147 -3.0464 -1.1572 8 7 3.2021 -3.2129 -2.6126 9 16 4.5749 -3.6963 -3.4026 10 8 5.6266 -2.8706 -2.9214 11 8 4.2324 -3.7959 -4.7781 12 6 4.9396 -5.3328 -2.8609 13 6 5.7528 -5.5293 -1.7552 14 6 6.0477 -6.8109 -1.3176 15 6 5.5353 -7.9043 -1.9783 16 6 4.7089 -7.7170 -3.1015 17 6 4.1764 -8.8326 -3.7879 18 1 3.2260 -8.7518 -4.2943 19 6 4.8811 -10.0414 -3.8111 20 7 4.2632 -11.1530 -4.1183 21 14 6.7038 -10.0681 -3.4034 22 1 6.8854 -10.4087 -1.9694 23 1 7.3842 -11.0858 -4.2439 24 1 7.2908 -8.7309 -3.6728 25 6 4.4160 -6.4110 -3.5365 26 6 1.9284 -2.1320 0.8115 27 1 0.9817 -2.5245 1.1827 28 6 3.0943 -2.9030 1.4338 29 8 2.0385 -0.7355 1.1336 30 1 -0.3632 0.4900 0.9033 31 1 -0.3634 0.5372 -0.8760 32 1 -0.3633 -1.0273 -0.0272 33 1 3.1079 -0.5165 -1.4310 34 1 1.4458 -0.6359 -2.0977 35 1 3.2036 -4.0260 -0.6793 36 1 4.1148 -2.5077 -0.8608 37 1 2.3897 -3.0402 -3.1136 38 1 6.1598 -4.6771 -1.2312 39 1 6.6820 -6.9523 -0.4549 40 1 5.7667 -8.9021 -1.6359 41 1 4.7515 -11.9909 -4.1341 42 1 3.7791 -6.2557 -4.3949 43 1 4.0365 -2.4913 1.0719 44 1 3.0512 -2.8130 2.5192 45 1 3.0256 -3.9541 1.1536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591331895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:24 Heat of formation + Delta-G solvation = -133.885634 kcal Electronic energy + Delta-G solvation = -27851.707976 eV Core-core repulsion = 23959.452594 eV Total energy + Delta-G solvation = -3892.255382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.05133 -39.68767 -38.30695 -36.94516 -36.74859 -35.64118 -33.47570 -32.90303 -32.54102 -31.88830 -29.39574 -27.25677 -26.57009 -25.34759 -24.10059 -22.68880 -21.87022 -21.00113 -20.54874 -19.70868 -18.44989 -18.06852 -17.62463 -17.08621 -17.02371 -16.70355 -16.51306 -16.23526 -15.90236 -15.46258 -15.40906 -14.83008 -14.68577 -14.22899 -14.01933 -13.89876 -13.59602 -13.56628 -13.38535 -13.32617 -13.19954 -13.08752 -13.04445 -12.92483 -12.88067 -12.66506 -12.54869 -12.35662 -12.05003 -11.79663 -11.69475 -11.58002 -11.53175 -11.46949 -11.07919 -10.54204 -10.39498 -10.00352 -9.68979 -8.97616 -6.60085 -0.54917 0.17906 0.64743 1.20278 1.35402 1.42377 2.02308 2.08402 2.41395 2.74213 2.94063 3.29458 3.37727 3.58456 3.61801 3.87792 4.13244 4.17418 4.18356 4.31163 4.33989 4.40823 4.44665 4.47419 4.48766 4.61328 4.70999 4.76177 4.78879 4.81342 4.88990 4.92154 5.06500 5.09904 5.16093 5.16950 5.25803 5.33852 5.36961 5.38611 5.43368 5.62976 5.76114 5.98706 6.07266 6.11820 6.24088 6.57645 6.69244 8.10614 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.003083 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.755816 B = 9081.121206 C = 9459.779066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 H 0.107 0.893 4 C -0.148 4.148 5 C -0.120 4.120 6 H 0.107 0.893 7 C 0.117 3.883 8 N -1.103 6.103 9 S 2.718 3.282 10 O -0.982 6.982 11 O -0.995 6.995 12 C -0.633 4.633 13 C -0.141 4.141 14 C -0.095 4.095 15 C -0.205 4.205 16 C 0.055 3.945 17 C -0.483 4.483 18 H 0.062 0.938 19 C 0.050 3.950 20 N -0.842 5.842 21 Si 0.955 3.045 22 H -0.247 1.247 23 H -0.275 1.275 24 H -0.256 1.256 25 C -0.121 4.121 26 C 0.080 3.920 27 H 0.080 0.920 28 C -0.166 4.166 29 O -0.390 6.390 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.427 0.573 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.108 0.892 41 H 0.296 0.704 42 H 0.114 0.886 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 17.343 10.037 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 H 0.125 0.875 4 C -0.186 4.186 5 C -0.140 4.140 6 H 0.125 0.875 7 C -0.008 4.008 8 N -0.866 5.866 9 S 2.810 3.190 10 O -0.971 6.971 11 O -0.985 6.985 12 C -0.721 4.721 13 C -0.162 4.162 14 C -0.113 4.113 15 C -0.224 4.224 16 C 0.051 3.949 17 C -0.513 4.513 18 H 0.080 0.920 19 C -0.166 4.166 20 N -0.467 5.467 21 Si 0.778 3.222 22 H -0.172 1.172 23 H -0.201 1.201 24 H -0.180 1.180 25 C -0.142 4.142 26 C 0.022 3.978 27 H 0.097 0.903 28 C -0.223 4.223 29 O -0.310 6.310 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.264 0.736 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.226 17.600 9.658 20.516 hybrid contribution -0.143 -1.411 -0.297 1.449 sum -4.369 16.189 9.361 19.205 Atomic orbital electron populations 1.22224 0.94430 1.02886 1.03117 1.23327 0.94587 0.96767 0.84443 0.87528 1.23360 1.02791 0.93315 0.99087 1.22749 0.98733 0.96691 0.95802 0.87511 1.21773 0.99916 1.01221 0.77937 1.55189 1.29841 1.84432 1.17124 1.00856 0.72938 0.73218 0.72014 1.93511 1.55622 1.66203 1.81807 1.93523 1.84056 1.87660 1.33287 1.30437 1.11806 1.21337 1.08522 1.20609 1.00704 0.97874 0.96976 1.21164 0.98547 0.92181 0.99437 1.21509 1.04700 0.98639 0.97588 1.17938 0.92067 0.92955 0.91905 1.19489 1.06611 0.94374 1.30798 0.91984 1.26784 1.04589 0.93782 0.91451 1.69702 1.40219 1.00155 1.36655 0.85641 0.77561 0.79405 0.79621 1.17219 1.20137 1.17980 1.20883 1.02361 0.91944 0.99032 1.22725 0.99486 0.82693 0.92931 0.90254 1.22148 0.98019 1.00463 1.01691 1.88915 1.84491 1.17310 1.40257 0.92053 0.90072 0.92186 0.90822 0.88302 0.90210 0.89942 0.73620 0.83910 0.83877 0.87400 0.89334 0.86802 0.91759 0.91731 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.39 71.98 0.68 -1.29 16 2 C 0.07 0.97 4.30 31.36 0.13 1.11 16 3 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.15 -2.17 6.06 31.98 0.19 -1.98 16 5 C -0.12 -1.87 2.69 -9.80 -0.03 -1.89 16 6 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 7 C 0.12 2.32 4.34 86.38 0.38 2.70 16 8 N -1.10 -25.11 5.84 -187.47 -1.10 -26.20 16 9 S 2.72 88.35 5.73 -56.49 -0.32 88.03 16 10 O -0.98 -34.47 16.74 -128.00 -2.14 -36.61 16 11 O -0.99 -38.37 17.27 -128.00 -2.21 -40.58 16 12 C -0.63 -24.26 5.94 22.21 0.13 -24.13 16 13 C -0.14 -5.05 9.53 22.46 0.21 -4.83 16 14 C -0.09 -3.50 10.02 22.22 0.22 -3.28 16 15 C -0.20 -9.04 7.18 22.73 0.16 -8.88 16 16 C 0.05 2.70 5.10 -21.29 -0.11 2.59 16 17 C -0.48 -26.34 9.57 23.46 0.22 -26.11 16 18 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 19 C 0.05 2.57 5.40 85.26 0.46 3.04 16 20 N -0.84 -44.80 13.93 21.83 0.30 -44.49 16 21 Si 0.95 40.93 24.52 68.60 1.68 42.61 16 22 H -0.25 -9.68 6.71 99.48 0.67 -9.02 16 23 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 24 H -0.26 -11.36 6.86 99.48 0.68 -10.68 16 25 C -0.12 -5.48 9.26 22.73 0.21 -5.27 16 26 C 0.08 1.34 3.45 30.97 0.11 1.45 16 27 H 0.08 1.19 8.05 -2.39 -0.02 1.17 16 28 C -0.17 -2.80 8.39 71.98 0.60 -2.19 16 29 O -0.39 -7.71 10.95 -148.98 -1.63 -9.34 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.70 7.28 -2.39 -0.02 0.68 16 33 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 34 H 0.10 1.11 8.05 -2.39 -0.02 1.09 16 35 H 0.08 1.56 6.53 -2.38 -0.02 1.54 16 36 H 0.08 1.71 6.54 -2.39 -0.02 1.70 16 37 H 0.43 7.69 8.65 -96.75 -0.84 6.85 16 38 H 0.14 4.25 7.60 -2.91 -0.02 4.23 16 39 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 40 H 0.11 4.67 4.73 -2.91 -0.01 4.65 16 41 H 0.30 14.09 8.30 -92.71 -0.77 13.32 16 42 H 0.11 5.11 7.61 -2.91 -0.02 5.09 16 43 H 0.06 1.15 6.81 -2.38 -0.02 1.13 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.29 6.76 -2.39 -0.02 1.28 16 Total: -1.00 -67.11 367.81 -1.72 -68.83 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.11 Total: 26.74 kcal Atomic # 6 Polarization: -72.56 SS G_CDS: 3.58 Total: -68.98 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.79 Total: -70.69 kcal Atomic # 8 Polarization: -80.55 SS G_CDS: -5.98 Total: -86.54 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.68 Total: 42.61 kcal Atomic # 16 Polarization: 88.35 SS G_CDS: -0.32 Total: 88.03 kcal Total: -67.11 -1.72 -68.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.053 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds