Wall clock time and date at job start Tue Mar 31 2020 23:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.33147 * 2 1 4 4 C 1.54473 * 110.46578 * 237.68156 * 2 1 3 5 5 C 1.54508 * 104.06285 * 217.14337 * 4 2 1 6 6 H 1.08998 * 110.62486 * 118.70480 * 5 4 2 7 7 C 1.53001 * 110.51271 * 241.35491 * 5 4 2 8 8 N 1.46503 * 109.47467 * 289.64625 * 7 5 4 9 9 S 1.65597 * 120.00365 * 164.99592 * 8 7 5 10 10 O 1.42100 * 106.40226 * 311.46224 * 9 8 7 11 11 O 1.42094 * 106.40220 * 178.53752 * 9 8 7 12 12 C 1.76205 * 107.21560 * 65.00033 * 9 8 7 13 13 C 1.38658 * 119.87538 * 270.02050 * 12 9 8 14 14 C 1.38609 * 120.50350 * 180.02562 * 13 12 9 15 15 C 1.37648 * 120.24493 * 359.67616 * 14 13 12 16 16 C 1.40694 * 119.74377 * 0.57717 * 15 14 13 17 17 C 1.41390 * 120.24574 * 179.72488 * 16 15 14 18 18 H 1.08002 * 120.00053 * 205.37188 * 17 16 15 19 19 C 1.39943 * 119.99907 * 25.35977 * 17 16 15 20 20 N 1.30829 * 120.00240 * 199.76766 * 19 17 16 21 21 Si 1.86801 * 119.99932 * 20.05086 * 19 17 16 22 22 H 1.48498 * 109.46864 * 264.47124 * 21 19 17 23 23 H 1.48490 * 109.47235 * 24.47053 * 21 19 17 24 24 H 1.48504 * 109.47284 * 144.47315 * 21 19 17 25 25 C 1.37592 * 119.87521 * 89.99780 * 12 9 8 26 26 C 1.54471 * 104.06454 * 0.02562 * 5 4 2 27 27 H 1.09002 * 110.37469 * 265.15158 * 26 5 4 28 28 C 1.53006 * 110.37488 * 142.91940 * 26 5 4 29 29 O 1.44426 * 104.80408 * 23.98019 * 26 5 4 30 30 H 1.09001 * 109.47082 * 299.20807 * 1 2 3 31 31 H 1.08995 * 109.47166 * 59.20198 * 1 2 3 32 32 H 1.08999 * 109.47017 * 179.20601 * 1 2 3 33 33 H 1.09007 * 110.50991 * 98.49853 * 4 2 1 34 34 H 1.09000 * 110.51359 * 335.78735 * 4 2 1 35 35 H 1.08991 * 109.47395 * 169.64096 * 7 5 4 36 36 H 1.09003 * 109.46805 * 49.64043 * 7 5 4 37 37 H 0.97006 * 119.99717 * 344.99705 * 8 7 5 38 38 H 1.08003 * 119.74671 * 0.02562 * 13 12 9 39 39 H 1.07993 * 119.87852 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.12815 * 180.32459 * 15 14 13 41 41 H 0.97003 * 119.99588 * 5.37829 * 20 19 17 42 42 H 1.07998 * 120.12753 * 359.97438 * 25 12 9 43 43 H 1.08994 * 109.46581 * 60.00142 * 28 26 5 44 44 H 1.08991 * 109.47015 * 180.02562 * 28 26 5 45 45 H 1.08997 * 109.46570 * 300.00314 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0702 -0.7737 -1.2230 5 6 3.3207 -1.5032 -0.6834 6 1 3.2026 -2.5833 -0.7705 7 6 4.5744 -1.0407 -1.4286 8 7 4.5430 -1.5513 -2.8014 9 16 5.5612 -0.9186 -3.9438 10 8 5.4448 0.4943 -3.8466 11 8 5.3144 -1.6381 -5.1439 12 6 7.2063 -1.3171 -3.4541 13 6 7.9138 -0.4478 -2.6378 14 6 9.2087 -0.7480 -2.2452 15 6 9.8045 -1.9184 -2.6575 16 6 9.0981 -2.8055 -3.4904 17 6 9.7019 -4.0079 -3.9249 18 1 9.3746 -4.4760 -4.8416 19 6 10.7238 -4.5913 -3.1675 20 7 11.5381 -5.4528 -3.7209 21 14 10.9203 -4.1459 -1.3640 22 1 11.9332 -3.0685 -1.2278 23 1 9.6194 -3.6730 -0.8263 24 1 11.3646 -5.3420 -0.6042 25 6 7.7839 -2.4900 -3.8829 26 6 3.3879 -1.0845 0.8019 27 1 4.0514 -0.2285 0.9253 28 6 3.8642 -2.2551 1.6644 29 8 2.0323 -0.7233 1.1451 30 1 -0.3633 0.5015 0.8970 31 1 -0.3633 0.5262 -0.8827 32 1 -0.3633 -1.0276 -0.0142 33 1 2.3451 -0.0835 -2.0207 34 1 1.3314 -1.4929 -1.5767 35 1 5.4604 -1.4205 -0.9198 36 1 4.6050 0.0487 -1.4468 37 1 3.9256 -2.2601 -3.0411 38 1 7.4522 0.4703 -2.3053 39 1 9.7503 -0.0639 -1.6089 40 1 10.8116 -2.1530 -2.3462 41 1 11.4837 -5.6288 -4.6733 42 1 7.2308 -3.1661 -4.5181 43 1 4.8564 -2.5666 1.3380 44 1 3.9057 -1.9441 2.7081 45 1 3.1694 -3.0886 1.5613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591331896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:29 Heat of formation + Delta-G solvation = -122.101941 kcal Electronic energy + Delta-G solvation = -27695.410433 eV Core-core repulsion = 23803.666030 eV Total energy + Delta-G solvation = -3891.744403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.09297 -37.98415 -36.85482 -35.75132 -35.46416 -33.96987 -32.99983 -31.96511 -30.62974 -30.21232 -29.07768 -26.05482 -25.10821 -23.10783 -22.49751 -21.75482 -20.82836 -20.62487 -19.33240 -18.49797 -17.32549 -16.76177 -16.35466 -16.07937 -15.78674 -15.54788 -15.37914 -14.77014 -14.24598 -14.07179 -13.94438 -13.64403 -13.40089 -13.32288 -12.84593 -12.79741 -12.61878 -12.30804 -12.15416 -12.13210 -12.04431 -11.92015 -11.74408 -11.72012 -11.62600 -11.52149 -10.98765 -10.91297 -10.83606 -10.82090 -10.65112 -10.25063 -10.01688 -9.92881 -9.63451 -9.43058 -9.24310 -8.32689 -7.98758 -7.51406 -4.75742 0.83694 1.85183 2.41062 3.04411 3.19343 3.34562 3.38133 3.57247 3.85612 4.04271 4.24377 4.32051 4.39225 4.53199 4.70310 4.85082 4.95732 5.04743 5.07687 5.10837 5.15896 5.27378 5.31015 5.39807 5.51517 5.54943 5.67077 5.76028 5.79896 5.81615 5.88146 5.88500 5.95380 5.98691 6.05947 6.13171 6.40007 6.57704 6.69171 6.88925 7.04214 7.11154 7.31783 7.35184 7.44016 7.61172 8.15205 8.24918 8.51249 9.79689 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.003413 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.891003 B = 8200.949388 C = 9298.619750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.124 4.124 6 H 0.093 0.907 7 C 0.127 3.873 8 N -1.119 6.119 9 S 2.690 3.310 10 O -0.971 6.971 11 O -0.970 6.970 12 C -0.621 4.621 13 C -0.166 4.166 14 C -0.087 4.087 15 C -0.207 4.207 16 C 0.078 3.922 17 C -0.507 4.507 18 H 0.082 0.918 19 C 0.042 3.958 20 N -0.804 5.804 21 Si 1.070 2.930 22 H -0.276 1.276 23 H -0.261 1.261 24 H -0.286 1.286 25 C -0.110 4.110 26 C 0.078 3.922 27 H 0.074 0.926 28 C -0.148 4.148 29 O -0.370 6.370 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.415 0.585 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.290 0.710 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.351 6.635 9.015 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.088 0.912 4 C -0.188 4.188 5 C -0.145 4.145 6 H 0.112 0.888 7 C 0.000 4.000 8 N -0.878 5.878 9 S 2.785 3.215 10 O -0.961 6.961 11 O -0.960 6.960 12 C -0.712 4.712 13 C -0.187 4.187 14 C -0.106 4.106 15 C -0.226 4.226 16 C 0.073 3.927 17 C -0.535 4.535 18 H 0.100 0.900 19 C -0.179 4.179 20 N -0.425 5.425 21 Si 0.896 3.104 22 H -0.203 1.203 23 H -0.185 1.185 24 H -0.214 1.214 25 C -0.131 4.131 26 C 0.019 3.981 27 H 0.092 0.908 28 C -0.205 4.205 29 O -0.289 6.289 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.249 0.751 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.134 0.866 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.714 6.762 9.779 18.917 hybrid contribution -0.245 -0.342 -1.492 1.551 sum -14.960 6.420 8.287 18.267 Atomic orbital electron populations 1.21799 0.93287 1.02823 1.02395 1.22990 0.95228 0.95600 0.85094 0.91230 1.23127 0.97092 1.00012 0.98542 1.22815 0.94666 1.01930 0.95043 0.88826 1.21294 0.97955 0.99348 0.81369 1.55543 1.55048 1.54230 1.22973 1.01685 0.73992 0.73370 0.72471 1.93521 1.86673 1.29592 1.86356 1.93554 1.85468 1.73906 1.43092 1.29919 1.22137 1.05293 1.13901 1.20035 0.96258 0.99184 1.03222 1.20688 0.94797 0.96358 0.98754 1.21260 0.99572 0.95937 1.05865 1.17808 0.90797 0.93167 0.90887 1.20743 1.16452 1.06990 1.09361 0.89978 1.27342 0.90304 0.92391 1.07890 1.70527 1.29929 1.26373 1.15710 0.83619 0.78309 0.75806 0.72686 1.20309 1.18528 1.21374 1.20829 0.95563 0.94927 1.01767 1.22943 0.84782 0.97737 0.92602 0.90810 1.21835 1.01719 0.97068 0.99919 1.89146 1.26951 1.74549 1.38279 0.91949 0.91141 0.91857 0.89758 0.90375 0.90828 0.90096 0.75148 0.87100 0.87772 0.87499 0.89882 0.86632 0.90559 0.91801 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.53 37.16 0.35 -0.74 16 2 C 0.07 0.63 3.92 -25.96 -0.10 0.52 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.15 -1.35 6.17 -25.17 -0.16 -1.50 16 5 C -0.12 -1.18 2.71 -89.06 -0.24 -1.42 16 6 H 0.09 0.84 7.87 -51.93 -0.41 0.44 16 7 C 0.13 1.43 5.31 -4.04 -0.02 1.40 16 8 N -1.12 -14.22 5.89 -10.61 -0.06 -14.29 16 9 S 2.69 46.32 5.73 -107.50 -0.62 45.71 16 10 O -0.97 -18.20 16.74 -57.17 -0.96 -19.15 16 11 O -0.97 -19.23 17.26 -57.17 -0.99 -20.22 16 12 C -0.62 -12.53 5.94 -39.66 -0.24 -12.76 16 13 C -0.17 -3.26 9.53 -39.29 -0.37 -3.64 16 14 C -0.09 -1.76 10.02 -39.66 -0.40 -2.15 16 15 C -0.21 -4.72 7.20 -38.87 -0.28 -5.00 16 16 C 0.08 1.90 5.20 -106.83 -0.56 1.34 16 17 C -0.51 -13.08 9.44 -37.74 -0.36 -13.44 16 18 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 19 C 0.04 1.04 5.40 -17.34 -0.09 0.95 16 20 N -0.80 -20.69 13.65 55.55 0.76 -19.93 16 21 Si 1.07 22.77 24.83 -169.99 -4.22 18.55 16 22 H -0.28 -5.57 6.65 56.52 0.38 -5.19 16 23 H -0.26 -5.42 6.82 56.52 0.39 -5.03 16 24 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 25 C -0.11 -2.49 9.26 -38.87 -0.36 -2.85 16 26 C 0.08 0.75 3.47 -25.96 -0.09 0.66 16 27 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 28 C -0.15 -1.31 9.52 37.16 0.35 -0.96 16 29 O -0.37 -4.06 11.04 -35.23 -0.39 -4.45 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.08 0.78 7.72 -51.93 -0.40 0.38 16 34 H 0.08 0.63 7.87 -51.93 -0.41 0.23 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.90 7.72 -51.93 -0.40 0.50 16 37 H 0.41 4.37 8.65 -34.47 -0.30 4.07 16 38 H 0.11 1.92 7.60 -52.48 -0.40 1.52 16 39 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.11 2.38 4.26 -52.49 -0.22 2.15 16 41 H 0.29 7.26 8.73 -40.82 -0.36 6.90 16 42 H 0.12 2.54 7.60 -52.49 -0.40 2.14 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -30.44 375.48 -10.14 -40.58 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.77 Total: 7.13 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: -2.55 Total: -39.59 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.70 Total: -34.22 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -2.33 Total: -43.82 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.22 Total: 18.55 kcal Atomic # 16 Polarization: 46.32 SS G_CDS: -0.62 Total: 45.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.44 -10.14 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.526 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds