Wall clock time and date at job start Tue Mar 31 2020 23:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.67963 * 2 1 4 4 C 1.54995 * 110.62030 * 237.03151 * 2 1 3 5 5 C 1.54807 * 102.09406 * 204.47712 * 4 2 1 6 6 H 1.09001 * 110.48912 * 262.06816 * 5 4 2 7 7 C 1.53000 * 110.48903 * 139.55885 * 5 4 2 8 8 N 1.46499 * 109.47350 * 66.45138 * 7 5 4 9 9 S 1.65600 * 119.99971 * 165.00165 * 8 7 5 10 10 O 1.42100 * 106.40444 * 311.45906 * 9 8 7 11 11 O 1.42099 * 106.39839 * 178.54189 * 9 8 7 12 12 C 1.76201 * 107.21975 * 65.00230 * 9 8 7 13 13 C 1.38654 * 119.87637 * 269.97839 * 12 9 8 14 14 C 1.38603 * 120.50217 * 179.97438 * 13 12 9 15 15 C 1.37646 * 120.24781 * 359.71528 * 14 13 12 16 16 C 1.40694 * 119.74426 * 0.58183 * 15 14 13 17 17 C 1.41394 * 120.24401 * 179.69772 * 16 15 14 18 18 H 1.08002 * 119.99919 * 154.94020 * 17 16 15 19 19 C 1.39941 * 119.99692 * 334.65463 * 17 16 15 20 20 N 1.30817 * 120.00726 * 342.49147 * 19 17 16 21 21 Si 1.86809 * 119.99481 * 162.49013 * 19 17 16 22 22 H 1.48505 * 109.46705 * 94.52152 * 21 19 17 23 23 H 1.48498 * 109.47008 * 214.52102 * 21 19 17 24 24 H 1.48497 * 109.47302 * 334.52278 * 21 19 17 25 25 C 1.37596 * 119.87381 * 89.99689 * 12 9 8 26 26 C 1.54096 * 104.18805 * 20.88236 * 5 4 2 27 27 H 1.09001 * 109.87708 * 242.60314 * 26 5 4 28 28 C 1.53002 * 109.87949 * 121.45405 * 26 5 4 29 29 O 1.43746 * 107.29595 * 2.02681 * 26 5 4 30 30 H 1.09000 * 109.47116 * 182.96269 * 1 2 3 31 31 H 1.09002 * 109.47054 * 302.96552 * 1 2 3 32 32 H 1.08997 * 109.46833 * 62.96719 * 1 2 3 33 33 H 1.09003 * 110.90806 * 86.27867 * 4 2 1 34 34 H 1.08998 * 110.90700 * 322.67569 * 4 2 1 35 35 H 1.09000 * 109.47204 * 306.45376 * 7 5 4 36 36 H 1.09000 * 109.47541 * 186.45575 * 7 5 4 37 37 H 0.97001 * 120.00244 * 345.00468 * 8 7 5 38 38 H 1.08001 * 119.74408 * 359.97438 * 13 12 9 39 39 H 1.07999 * 119.87807 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.12555 * 180.30009 * 15 14 13 41 41 H 0.96995 * 120.00446 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.13168 * 359.97438 * 25 12 9 43 43 H 1.09004 * 109.47045 * 60.00108 * 28 26 5 44 44 H 1.09002 * 109.47083 * 180.02562 * 28 26 5 45 45 H 1.08998 * 109.47075 * 299.99708 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 6 2.0759 -0.7894 -1.2171 5 6 3.4795 -1.2168 -0.7234 6 1 4.2410 -0.5347 -1.1016 7 6 3.7855 -2.6519 -1.1565 8 7 3.9002 -2.7077 -2.6159 9 16 4.5842 -4.0292 -3.3427 10 8 5.8016 -4.2807 -2.6543 11 8 4.5170 -3.7965 -4.7429 12 6 3.5342 -5.4060 -3.0161 13 6 3.7408 -6.1788 -1.8836 14 6 2.9223 -7.2643 -1.6138 15 6 1.8901 -7.5833 -2.4666 16 6 1.6750 -6.8100 -3.6222 17 6 0.6217 -7.1321 -4.5088 18 1 0.1936 -6.3670 -5.1394 19 6 0.1380 -8.4437 -4.5734 20 7 0.8526 -9.4290 -4.0940 21 14 -1.5285 -8.7875 -5.3444 22 1 -1.3475 -9.1499 -6.7732 23 1 -2.1830 -9.9114 -4.6277 24 1 -2.3795 -7.5747 -5.2453 25 6 2.5126 -5.7104 -3.8862 26 6 3.3839 -1.1254 0.8119 27 1 4.0854 -0.3783 1.1831 28 6 3.6934 -2.4884 1.4344 29 8 2.0384 -0.7352 1.1339 30 1 -0.3633 -1.0263 0.0531 31 1 -0.3633 0.5592 0.8622 32 1 -0.3633 0.4671 -0.9154 33 1 2.1510 -0.1477 -2.0950 34 1 1.4550 -1.6606 -1.4258 35 1 2.9799 -3.3096 -0.8300 36 1 4.7237 -2.9754 -0.7056 37 1 3.5756 -1.9707 -3.1565 38 1 4.5455 -5.9329 -1.2066 39 1 3.0926 -7.8597 -0.7290 40 1 1.2506 -8.4267 -2.2519 41 1 0.5175 -10.3380 -4.1391 42 1 2.3534 -5.1071 -4.7677 43 1 4.7012 -2.7953 1.1544 44 1 3.6235 -2.4164 2.5198 45 1 2.9757 -3.2245 1.0726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591331897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:33 Heat of formation + Delta-G solvation = -115.614490 kcal Electronic energy + Delta-G solvation = -27876.956238 eV Core-core repulsion = 23985.493151 eV Total energy + Delta-G solvation = -3891.463086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.14637 -37.65746 -36.70721 -35.73422 -35.31434 -33.85581 -32.96728 -31.90537 -30.09485 -29.81270 -28.88353 -25.77594 -25.48483 -23.79915 -21.92251 -21.49066 -21.01392 -20.02648 -19.09481 -17.99427 -17.16298 -16.92128 -15.99067 -15.93745 -15.81427 -15.19723 -15.04220 -14.74198 -14.54556 -14.28902 -13.52657 -13.47105 -13.31648 -13.13093 -12.83219 -12.60061 -12.40499 -12.22800 -12.02632 -11.96189 -11.76971 -11.59601 -11.55585 -11.41116 -11.37120 -11.31100 -11.06606 -10.98474 -10.89281 -10.88293 -10.68179 -10.61806 -9.84005 -9.77928 -9.67638 -9.36035 -9.16053 -8.05714 -7.71400 -6.93643 -4.54970 0.99946 2.17757 2.61930 2.99163 3.00899 3.06929 3.50059 3.63414 3.81960 4.20733 4.31531 4.37387 4.43811 4.64292 4.77489 4.93193 5.03981 5.07148 5.20577 5.23460 5.32164 5.37681 5.41730 5.47901 5.53558 5.68683 5.71667 5.77222 5.92139 5.97973 6.00735 6.03348 6.10220 6.15940 6.16944 6.63697 6.74165 6.82175 6.83208 7.01391 7.15599 7.21373 7.36392 7.70505 7.78777 7.92594 8.38363 8.65530 8.70154 10.02309 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.003559 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.857527 B = 7866.201602 C = 8922.789291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.126 4.126 6 H 0.091 0.909 7 C 0.126 3.874 8 N -1.122 6.122 9 S 2.689 3.311 10 O -0.975 6.975 11 O -0.972 6.972 12 C -0.631 4.631 13 C -0.149 4.149 14 C -0.120 4.120 15 C -0.117 4.117 16 C 0.092 3.908 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.793 5.793 21 Si 0.911 3.089 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.125 4.125 26 C 0.083 3.917 27 H 0.070 0.930 28 C -0.164 4.164 29 O -0.371 6.371 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.412 0.588 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.284 0.716 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 14.416 8.015 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.085 0.915 4 C -0.188 4.188 5 C -0.146 4.146 6 H 0.109 0.891 7 C 0.000 4.000 8 N -0.880 5.880 9 S 2.785 3.215 10 O -0.965 6.965 11 O -0.963 6.963 12 C -0.723 4.723 13 C -0.170 4.170 14 C -0.140 4.140 15 C -0.137 4.137 16 C 0.089 3.911 17 C -0.491 4.491 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.418 5.418 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.146 4.146 26 C 0.024 3.976 27 H 0.088 0.912 28 C -0.221 4.221 29 O -0.290 6.290 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.245 0.755 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.236 13.975 7.865 16.084 hybrid contribution -1.326 -0.382 -0.533 1.479 sum -0.090 13.593 7.332 15.444 Atomic orbital electron populations 1.21776 0.93114 1.03309 1.02234 1.23085 0.95259 0.95009 0.85142 0.91477 1.23339 0.95677 1.01403 0.98401 1.22775 0.98494 0.97487 0.95868 0.89105 1.21511 1.02642 0.96552 0.79272 1.55621 1.81307 1.36344 1.14766 1.01654 0.74005 0.73230 0.72625 1.93507 1.42474 1.85214 1.75324 1.93540 1.87266 1.85382 1.30093 1.29715 1.16322 1.19938 1.06312 1.20079 1.01390 0.98379 0.97141 1.20807 0.96907 0.97099 0.99148 1.21620 0.97890 1.00825 0.93350 1.17676 0.91198 0.90601 0.91646 1.19600 1.14977 0.94795 1.19685 0.89971 1.25928 0.98467 0.95799 0.94082 1.69776 1.35632 1.00882 1.35557 0.86252 0.81597 0.79108 0.79569 1.19389 1.19928 1.18296 1.20750 0.94723 1.01447 0.97682 1.22652 0.84851 0.97149 0.92937 0.91223 1.22121 1.02648 0.95866 1.01466 1.88912 1.27761 1.73463 1.38910 0.91443 0.92058 0.91110 0.90084 0.89364 0.90649 0.89811 0.75473 0.87617 0.88376 0.85876 0.90543 0.87096 0.90520 0.91896 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.66 37.16 0.36 -0.90 16 2 C 0.07 0.68 3.98 -25.68 -0.10 0.58 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -1.41 5.63 -24.73 -0.14 -1.55 16 5 C -0.13 -1.23 3.18 -89.10 -0.28 -1.51 16 6 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 7 C 0.13 1.52 4.34 -4.04 -0.02 1.50 16 8 N -1.12 -15.11 5.91 -10.61 -0.06 -15.17 16 9 S 2.69 49.12 5.73 -107.50 -0.62 48.50 16 10 O -0.98 -19.45 16.74 -57.17 -0.96 -20.40 16 11 O -0.97 -20.23 17.27 -57.17 -0.99 -21.22 16 12 C -0.63 -13.48 5.94 -39.66 -0.24 -13.71 16 13 C -0.15 -3.14 9.53 -39.29 -0.37 -3.52 16 14 C -0.12 -2.65 10.02 -39.66 -0.40 -3.04 16 15 C -0.12 -2.87 8.69 -38.87 -0.34 -3.21 16 16 C 0.09 2.36 5.56 -106.83 -0.59 1.76 16 17 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 18 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 19 C 0.08 1.82 5.14 -17.35 -0.09 1.73 16 20 N -0.79 -19.71 11.00 55.55 0.61 -19.10 16 21 Si 0.91 17.92 29.60 -169.99 -5.03 12.89 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 25 C -0.12 -2.95 9.26 -38.87 -0.36 -3.32 16 26 C 0.08 0.82 4.05 -26.16 -0.11 0.72 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 C -0.16 -1.62 8.40 37.16 0.31 -1.31 16 29 O -0.37 -4.31 10.89 -35.23 -0.38 -4.69 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.94 7.74 -51.93 -0.40 0.54 16 35 H 0.08 0.96 6.85 -51.93 -0.36 0.61 16 36 H 0.08 0.99 6.26 -51.93 -0.32 0.67 16 37 H 0.41 4.60 8.28 -34.47 -0.29 4.31 16 38 H 0.11 2.00 7.60 -52.49 -0.40 1.60 16 39 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.08 6.22 -52.49 -0.33 2.76 16 41 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 42 H 0.11 2.53 7.60 -52.49 -0.40 2.13 16 43 H 0.08 0.69 6.80 -51.93 -0.35 0.33 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.79 6.75 -51.93 -0.35 0.44 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -30.86 374.37 -11.04 -41.90 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.55 Total: 9.51 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: -2.71 Total: -37.86 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.55 Total: -34.27 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -2.33 Total: -46.31 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.62 Total: 48.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.86 -11.04 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.711 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds