Wall clock time and date at job start Tue Mar 31 2020 23:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.67963 * 2 1 4 4 C 1.54995 * 110.62030 * 237.03151 * 2 1 3 5 5 C 1.54807 * 102.09406 * 204.47712 * 4 2 1 6 6 H 1.09001 * 110.48912 * 262.06816 * 5 4 2 7 7 C 1.53000 * 110.48903 * 139.55885 * 5 4 2 8 8 N 1.46499 * 109.47350 * 66.45138 * 7 5 4 9 9 S 1.65600 * 119.99971 * 165.00165 * 8 7 5 10 10 O 1.42100 * 106.40444 * 311.45906 * 9 8 7 11 11 O 1.42099 * 106.39839 * 178.54189 * 9 8 7 12 12 C 1.76201 * 107.21975 * 65.00230 * 9 8 7 13 13 C 1.38654 * 119.87637 * 269.97839 * 12 9 8 14 14 C 1.38603 * 120.50217 * 179.97438 * 13 12 9 15 15 C 1.37646 * 120.24781 * 359.71528 * 14 13 12 16 16 C 1.40694 * 119.74426 * 0.58183 * 15 14 13 17 17 C 1.41394 * 120.24401 * 179.69772 * 16 15 14 18 18 H 1.08002 * 119.99919 * 154.94020 * 17 16 15 19 19 C 1.39941 * 119.99692 * 334.65463 * 17 16 15 20 20 N 1.30817 * 120.00726 * 342.49147 * 19 17 16 21 21 Si 1.86809 * 119.99481 * 162.49013 * 19 17 16 22 22 H 1.48505 * 109.46705 * 94.52152 * 21 19 17 23 23 H 1.48498 * 109.47008 * 214.52102 * 21 19 17 24 24 H 1.48497 * 109.47302 * 334.52278 * 21 19 17 25 25 C 1.37596 * 119.87381 * 89.99689 * 12 9 8 26 26 C 1.54096 * 104.18805 * 20.88236 * 5 4 2 27 27 H 1.09001 * 109.87708 * 242.60314 * 26 5 4 28 28 C 1.53002 * 109.87949 * 121.45405 * 26 5 4 29 29 O 1.43746 * 107.29595 * 2.02681 * 26 5 4 30 30 H 1.09000 * 109.47116 * 182.96269 * 1 2 3 31 31 H 1.09002 * 109.47054 * 302.96552 * 1 2 3 32 32 H 1.08997 * 109.46833 * 62.96719 * 1 2 3 33 33 H 1.09003 * 110.90806 * 86.27867 * 4 2 1 34 34 H 1.08998 * 110.90700 * 322.67569 * 4 2 1 35 35 H 1.09000 * 109.47204 * 306.45376 * 7 5 4 36 36 H 1.09000 * 109.47541 * 186.45575 * 7 5 4 37 37 H 0.97001 * 120.00244 * 345.00468 * 8 7 5 38 38 H 1.08001 * 119.74408 * 359.97438 * 13 12 9 39 39 H 1.07999 * 119.87807 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.12555 * 180.30009 * 15 14 13 41 41 H 0.96995 * 120.00446 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.13168 * 359.97438 * 25 12 9 43 43 H 1.09004 * 109.47045 * 60.00108 * 28 26 5 44 44 H 1.09002 * 109.47083 * 180.02562 * 28 26 5 45 45 H 1.08998 * 109.47075 * 299.99708 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 6 2.0759 -0.7894 -1.2171 5 6 3.4795 -1.2168 -0.7234 6 1 4.2410 -0.5347 -1.1016 7 6 3.7855 -2.6519 -1.1565 8 7 3.9002 -2.7077 -2.6159 9 16 4.5842 -4.0292 -3.3427 10 8 5.8016 -4.2807 -2.6543 11 8 4.5170 -3.7965 -4.7429 12 6 3.5342 -5.4060 -3.0161 13 6 3.7408 -6.1788 -1.8836 14 6 2.9223 -7.2643 -1.6138 15 6 1.8901 -7.5833 -2.4666 16 6 1.6750 -6.8100 -3.6222 17 6 0.6217 -7.1321 -4.5088 18 1 0.1936 -6.3670 -5.1394 19 6 0.1380 -8.4437 -4.5734 20 7 0.8526 -9.4290 -4.0940 21 14 -1.5285 -8.7875 -5.3444 22 1 -1.3475 -9.1499 -6.7732 23 1 -2.1830 -9.9114 -4.6277 24 1 -2.3795 -7.5747 -5.2453 25 6 2.5126 -5.7104 -3.8862 26 6 3.3839 -1.1254 0.8119 27 1 4.0854 -0.3783 1.1831 28 6 3.6934 -2.4884 1.4344 29 8 2.0384 -0.7352 1.1339 30 1 -0.3633 -1.0263 0.0531 31 1 -0.3633 0.5592 0.8622 32 1 -0.3633 0.4671 -0.9154 33 1 2.1510 -0.1477 -2.0950 34 1 1.4550 -1.6606 -1.4258 35 1 2.9799 -3.3096 -0.8300 36 1 4.7237 -2.9754 -0.7056 37 1 3.5756 -1.9707 -3.1565 38 1 4.5455 -5.9329 -1.2066 39 1 3.0926 -7.8597 -0.7290 40 1 1.2506 -8.4267 -2.2519 41 1 0.5175 -10.3380 -4.1391 42 1 2.3534 -5.1071 -4.7677 43 1 4.7012 -2.7953 1.1544 44 1 3.6235 -2.4164 2.5198 45 1 2.9757 -3.2245 1.0726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591331897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:32 Heat of formation + Delta-G solvation = -135.972231 kcal Electronic energy + Delta-G solvation = -27877.839015 eV Core-core repulsion = 23985.493151 eV Total energy + Delta-G solvation = -3892.345864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.92649 -39.44522 -38.27522 -36.91818 -36.74282 -35.66551 -33.72725 -32.82396 -31.91701 -31.58996 -29.62369 -27.35584 -26.68724 -24.58214 -23.67006 -22.80667 -22.22661 -20.92069 -20.54539 -19.63044 -18.43182 -17.94172 -17.72500 -17.10266 -16.79268 -16.65996 -16.55554 -16.01091 -15.71670 -15.25042 -15.21065 -15.05420 -14.34848 -14.29533 -14.01157 -13.72725 -13.55202 -13.29032 -13.26721 -13.17941 -13.09175 -13.06117 -13.03458 -12.85763 -12.83945 -12.73277 -12.59038 -12.22655 -12.18056 -11.73740 -11.64135 -11.56493 -11.49437 -11.34430 -11.14282 -10.59374 -10.34643 -9.84938 -9.55356 -8.73568 -6.45606 -0.49217 0.40828 0.84440 1.36756 1.43935 1.52017 2.12467 2.17990 2.54966 2.78891 2.89484 3.41352 3.50772 3.55676 3.63067 3.92656 4.05256 4.22073 4.27037 4.31062 4.43856 4.45885 4.48401 4.51932 4.61370 4.71446 4.75868 4.83874 4.85428 4.90012 4.93423 5.00494 5.06908 5.15364 5.20230 5.20622 5.25676 5.32164 5.38548 5.41342 5.56261 5.88591 5.93479 6.09188 6.10259 6.13201 6.52334 6.79703 6.84482 8.24978 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.003559 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.857527 B = 7866.201602 C = 8922.789291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.119 4.119 6 H 0.113 0.887 7 C 0.118 3.882 8 N -1.103 6.103 9 S 2.721 3.279 10 O -0.985 6.985 11 O -0.997 6.997 12 C -0.638 4.638 13 C -0.146 4.146 14 C -0.123 4.123 15 C -0.140 4.140 16 C 0.063 3.937 17 C -0.499 4.499 18 H 0.080 0.920 19 C 0.037 3.963 20 N -0.825 5.825 21 Si 0.983 3.017 22 H -0.264 1.264 23 H -0.264 1.264 24 H -0.257 1.257 25 C -0.145 4.145 26 C 0.080 3.920 27 H 0.088 0.912 28 C -0.167 4.167 29 O -0.395 6.395 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.426 0.574 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.291 0.709 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 16.093 8.539 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.103 0.897 4 C -0.190 4.190 5 C -0.139 4.139 6 H 0.131 0.869 7 C -0.007 4.007 8 N -0.866 5.866 9 S 2.813 3.187 10 O -0.975 6.975 11 O -0.987 6.987 12 C -0.727 4.727 13 C -0.167 4.167 14 C -0.142 4.142 15 C -0.160 4.160 16 C 0.060 3.940 17 C -0.529 4.529 18 H 0.098 0.902 19 C -0.179 4.179 20 N -0.451 5.451 21 Si 0.803 3.197 22 H -0.189 1.189 23 H -0.188 1.188 24 H -0.180 1.180 25 C -0.166 4.166 26 C 0.022 3.978 27 H 0.106 0.894 28 C -0.224 4.224 29 O -0.315 6.315 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.262 0.738 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.128 0.872 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.624 15.630 8.393 17.815 hybrid contribution -1.347 -0.808 -0.591 1.678 sum 0.277 14.823 7.802 16.753 Atomic orbital electron populations 1.21798 0.92976 1.02418 1.03251 1.23250 0.95519 0.95619 0.84407 0.89660 1.23366 0.95149 1.01148 0.99338 1.22767 0.99252 0.96048 0.95874 0.86895 1.21726 1.02745 0.98380 0.77851 1.55191 1.80872 1.34832 1.15664 1.00729 0.73239 0.72871 0.71840 1.93492 1.42853 1.85677 1.75494 1.93504 1.87488 1.85614 1.32097 1.30263 1.15589 1.21331 1.05511 1.20476 1.01421 0.97517 0.97252 1.21145 0.96012 0.97515 0.99529 1.21619 0.99170 1.01041 0.94141 1.18035 0.92012 0.91676 0.92311 1.19868 1.16355 0.95804 1.20825 0.90170 1.26760 1.01784 0.95022 0.94292 1.69819 1.37265 1.01478 1.36545 0.85177 0.76721 0.79083 0.78692 1.18871 1.18823 1.18031 1.20836 0.95723 1.01531 0.98532 1.22771 0.84645 0.97458 0.92938 0.89388 1.22154 1.02757 0.95752 1.01723 1.88895 1.28658 1.73966 1.40024 0.93193 0.91727 0.89511 0.87992 0.91232 0.91651 0.89136 0.73750 0.84861 0.85603 0.87156 0.89782 0.87212 0.89462 0.91631 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.66 71.98 0.69 -1.66 16 2 C 0.07 1.16 3.98 31.28 0.12 1.28 16 3 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.15 -2.53 5.63 31.89 0.18 -2.35 16 5 C -0.12 -2.00 3.18 -9.81 -0.03 -2.03 16 6 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 7 C 0.12 2.61 4.34 86.38 0.37 2.98 16 8 N -1.10 -27.47 5.91 -187.49 -1.11 -28.58 16 9 S 2.72 95.76 5.73 -56.49 -0.32 95.44 16 10 O -0.99 -37.20 16.74 -128.00 -2.14 -39.34 16 11 O -1.00 -40.64 17.27 -128.00 -2.21 -42.85 16 12 C -0.64 -27.12 5.94 22.22 0.13 -26.99 16 13 C -0.15 -6.04 9.53 22.46 0.21 -5.82 16 14 C -0.12 -5.40 10.02 22.22 0.22 -5.18 16 15 C -0.14 -7.08 8.69 22.73 0.20 -6.88 16 16 C 0.06 3.33 5.56 -21.29 -0.12 3.21 16 17 C -0.50 -26.40 9.05 23.46 0.21 -26.19 16 18 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 19 C 0.04 1.81 5.14 85.26 0.44 2.24 16 20 N -0.83 -42.08 11.00 21.82 0.24 -41.84 16 21 Si 0.98 37.16 29.60 68.60 2.03 39.19 16 22 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 24 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 25 C -0.15 -7.06 9.26 22.73 0.21 -6.85 16 26 C 0.08 1.41 4.05 30.97 0.13 1.54 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 C -0.17 -3.06 8.40 71.98 0.60 -2.45 16 29 O -0.39 -8.59 10.89 -148.98 -1.62 -10.21 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.43 7.74 -2.39 -0.02 1.41 16 35 H 0.07 1.60 6.85 -2.39 -0.02 1.59 16 36 H 0.09 1.91 6.26 -2.39 -0.01 1.90 16 37 H 0.43 8.47 8.28 -96.75 -0.80 7.67 16 38 H 0.13 4.72 7.60 -2.91 -0.02 4.70 16 39 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.11 5.76 6.22 -2.91 -0.02 5.74 16 41 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 42 H 0.11 5.19 7.60 -2.91 -0.02 5.17 16 43 H 0.09 1.38 6.80 -2.39 -0.02 1.36 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.21 6.75 -2.39 -0.02 1.19 16 Total: -1.00 -67.36 374.37 -1.35 -68.71 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.20 Total: 34.63 kcal Atomic # 6 Polarization: -78.72 SS G_CDS: 3.58 Total: -75.14 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -0.87 Total: -70.42 kcal Atomic # 8 Polarization: -86.42 SS G_CDS: -5.97 Total: -92.40 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: 95.76 SS G_CDS: -0.32 Total: 95.44 kcal Total: -67.36 -1.35 -68.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.263 kcal (2) G-P(sol) polarization free energy of solvation -67.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds