Wall clock time and date at job start Tue Mar 31 2020 23:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.55167 * 2 1 4 4 C 1.54994 * 110.61569 * 237.12567 * 2 1 3 5 5 C 1.54813 * 102.08907 * 204.47533 * 4 2 1 6 6 H 1.09002 * 110.48519 * 262.06920 * 5 4 2 7 7 C 1.53006 * 110.48920 * 139.55886 * 5 4 2 8 8 N 1.46501 * 109.47207 * 68.24127 * 7 5 4 9 9 S 1.65599 * 119.99951 * 165.00360 * 8 7 5 10 10 O 1.42102 * 106.40019 * 311.46131 * 9 8 7 11 11 O 1.42094 * 106.40228 * 178.54232 * 9 8 7 12 12 C 1.76198 * 107.21959 * 64.99879 * 9 8 7 13 13 C 1.38657 * 119.87611 * 270.29605 * 12 9 8 14 14 C 1.38609 * 120.49950 * 180.25549 * 13 12 9 15 15 C 1.37644 * 120.25134 * 359.44679 * 14 13 12 16 16 C 1.40695 * 119.73780 * 0.27849 * 15 14 13 17 17 C 1.41397 * 120.24129 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00283 * 204.39756 * 17 16 15 19 19 C 1.39942 * 120.00058 * 24.39026 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87057 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86546 * 19 17 16 22 22 H 1.48504 * 109.46865 * 90.00477 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00257 * 21 19 17 24 24 H 1.48499 * 109.47067 * 330.00626 * 21 19 17 25 25 C 1.37593 * 119.87583 * 90.00054 * 12 9 8 26 26 C 1.54100 * 104.30741 * 20.81243 * 5 4 2 27 27 H 1.09002 * 109.87544 * 121.52171 * 26 5 4 28 28 C 1.53001 * 109.87628 * 242.67431 * 26 5 4 29 29 O 1.44046 * 107.13434 * 2.13650 * 26 5 4 30 30 H 1.09004 * 109.47281 * 182.87715 * 1 2 3 31 31 H 1.09002 * 109.46950 * 302.87406 * 1 2 3 32 32 H 1.08997 * 109.47489 * 62.87552 * 1 2 3 33 33 H 1.09002 * 110.91181 * 86.27623 * 4 2 1 34 34 H 1.09003 * 110.91043 * 322.67005 * 4 2 1 35 35 H 1.09003 * 109.46655 * 308.24134 * 7 5 4 36 36 H 1.08994 * 109.47003 * 188.24173 * 7 5 4 37 37 H 0.97003 * 120.00082 * 344.99876 * 8 7 5 38 38 H 1.08005 * 119.75119 * 0.02562 * 13 12 9 39 39 H 1.08007 * 119.87443 * 179.72068 * 14 13 12 40 40 H 1.07994 * 120.13042 * 180.29192 * 15 14 13 41 41 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.13010 * 359.97438 * 25 12 9 43 43 H 1.08999 * 109.47152 * 60.00055 * 28 26 5 44 44 H 1.08997 * 109.46480 * 180.02562 * 28 26 5 45 45 H 1.09000 * 109.46986 * 299.99751 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7874 -1.2184 5 6 3.4794 -1.2156 -0.7254 6 1 4.2408 -0.5328 -1.1025 7 6 3.7854 -2.6501 -1.1608 8 7 3.9424 -2.6956 -2.6166 9 16 4.6358 -4.0175 -3.3337 10 8 5.8301 -4.2852 -2.6118 11 8 4.6117 -3.7735 -4.7333 12 6 3.5647 -5.3873 -3.0489 13 6 3.7271 -6.1667 -1.9137 14 6 2.8952 -7.2503 -1.6795 15 6 1.8899 -7.5576 -2.5680 16 6 1.7123 -6.7703 -3.7204 17 6 0.6833 -7.0766 -4.6405 18 1 0.7694 -6.7641 -5.6708 19 6 -0.4467 -7.7849 -4.2164 20 7 -0.7300 -7.8618 -2.9414 21 14 -1.5506 -8.6205 -5.4705 22 1 -1.0745 -10.0080 -5.7023 23 1 -2.9441 -8.6544 -4.9586 24 1 -1.5105 -7.8636 -6.7474 25 6 2.5664 -5.6758 -3.9508 26 6 3.3874 -1.1259 0.8102 27 1 3.6097 -2.0973 1.2521 28 6 4.3725 -0.0769 1.3300 29 8 2.0384 -0.7371 1.1326 30 1 -0.3634 -1.0264 0.0516 31 1 -0.3633 0.5578 0.8631 32 1 -0.3634 0.4685 -0.9146 33 1 2.1508 -0.1444 -2.0953 34 1 1.4549 -1.6584 -1.4285 35 1 2.9648 -3.3029 -0.8632 36 1 4.7072 -2.9853 -0.6853 37 1 3.6401 -1.9515 -3.1606 38 1 4.5100 -5.9298 -1.2084 39 1 3.0336 -7.8533 -0.7941 40 1 1.2399 -8.3996 -2.3812 41 1 -1.5135 -8.3525 -2.6474 42 1 2.4384 -5.0644 -4.8318 43 1 4.1307 0.8941 0.8979 44 1 4.3022 -0.0194 2.4162 45 1 5.3865 -0.3586 1.0463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591331898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:37 Heat of formation + Delta-G solvation = -120.655351 kcal Electronic energy + Delta-G solvation = -27710.782757 eV Core-core repulsion = 23819.101083 eV Total energy + Delta-G solvation = -3891.681674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.06126 -37.65752 -36.70794 -35.61423 -35.32077 -33.86405 -32.76720 -31.87761 -30.09498 -29.80710 -29.01586 -26.19633 -25.50090 -23.14299 -21.92447 -21.23416 -21.02244 -20.62834 -19.02395 -17.96619 -17.04219 -16.98665 -16.09933 -15.89710 -15.69280 -15.19158 -14.82796 -14.63284 -14.54518 -14.12301 -13.54760 -13.44112 -13.34145 -13.30005 -12.84887 -12.64990 -12.59624 -12.16822 -11.95010 -11.92726 -11.83268 -11.63232 -11.56497 -11.44545 -11.41858 -11.38879 -11.01927 -10.94748 -10.89257 -10.83550 -10.70490 -10.61180 -9.81785 -9.75474 -9.67173 -9.37439 -9.17672 -8.05825 -7.72608 -6.94593 -4.55547 1.00547 2.17567 2.61530 2.98829 3.02860 3.05470 3.50963 3.68791 3.81433 4.21123 4.34122 4.40377 4.45743 4.61193 4.87345 4.96363 5.03994 5.13281 5.14469 5.25363 5.27595 5.37181 5.39147 5.54007 5.55437 5.66647 5.79566 5.80089 5.91423 5.96210 6.00806 6.05880 6.07143 6.13261 6.16076 6.63659 6.74561 6.82436 6.84034 7.01283 7.16237 7.21257 7.36394 7.71039 7.79259 7.92599 8.38600 8.65172 8.69969 10.00778 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.003579 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.154587 B = 7821.627191 C = 9170.341790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 H 0.066 0.934 4 C -0.151 4.151 5 C -0.125 4.125 6 H 0.092 0.908 7 C 0.128 3.872 8 N -1.120 6.120 9 S 2.690 3.310 10 O -0.976 6.976 11 O -0.973 6.973 12 C -0.631 4.631 13 C -0.150 4.150 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.092 3.908 17 C -0.461 4.461 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.793 5.793 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.124 4.124 26 C 0.078 3.922 27 H 0.099 0.901 28 C -0.169 4.169 29 O -0.368 6.368 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.413 0.587 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.283 0.717 42 H 0.111 0.889 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 12.907 6.276 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.084 0.916 4 C -0.188 4.188 5 C -0.145 4.145 6 H 0.110 0.890 7 C 0.002 3.998 8 N -0.878 5.878 9 S 2.786 3.214 10 O -0.966 6.966 11 O -0.964 6.964 12 C -0.723 4.723 13 C -0.171 4.171 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.088 3.912 17 C -0.490 4.490 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.418 5.418 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.145 4.145 26 C 0.019 3.981 27 H 0.117 0.883 28 C -0.227 4.227 29 O -0.287 6.287 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.246 0.754 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.389 12.648 6.297 14.529 hybrid contribution -1.271 -0.424 -0.591 1.464 sum 2.118 12.223 5.706 13.655 Atomic orbital electron populations 1.21782 0.93149 1.03378 1.02188 1.23082 0.95210 0.95009 0.85212 0.91590 1.23345 0.95668 1.01469 0.98352 1.22815 0.98568 0.97433 0.95651 0.89001 1.21309 1.02404 0.96421 0.79659 1.55543 1.81575 1.35843 1.14871 1.01615 0.74003 0.73208 0.72586 1.93509 1.44018 1.84983 1.74047 1.93537 1.87295 1.85230 1.30293 1.29717 1.16794 1.20006 1.05814 1.20079 1.01336 0.99004 0.96653 1.20813 0.96597 0.97586 0.98964 1.21643 0.96815 0.99693 0.95643 1.17682 0.91454 0.89521 0.92526 1.19635 1.01323 1.30855 0.97184 0.89899 1.25932 0.98106 0.94309 0.95926 1.69784 1.24552 1.31596 1.15916 0.86245 0.78560 0.80339 0.81277 1.19138 1.20198 1.18426 1.20772 0.96762 0.98684 0.98321 1.22775 0.83180 0.98720 0.93393 0.88300 1.22275 0.99200 0.99227 1.01991 1.88984 1.27172 1.73341 1.39249 0.91375 0.92096 0.91135 0.90135 0.89288 0.90751 0.90132 0.75387 0.87631 0.88383 0.85747 0.90564 0.87084 0.92448 0.91819 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.65 37.16 0.36 -1.02 16 2 C 0.07 0.72 3.92 -25.68 -0.10 0.62 16 3 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 4 C -0.15 -1.51 5.72 -24.72 -0.14 -1.65 16 5 C -0.12 -1.26 2.78 -89.09 -0.25 -1.51 16 6 H 0.09 0.81 7.70 -51.93 -0.40 0.41 16 7 C 0.13 1.60 5.33 -4.04 -0.02 1.58 16 8 N -1.12 -15.41 5.92 -10.61 -0.06 -15.47 16 9 S 2.69 49.03 5.73 -107.50 -0.62 48.41 16 10 O -0.98 -19.35 16.75 -57.17 -0.96 -20.31 16 11 O -0.97 -20.03 17.27 -57.17 -0.99 -21.01 16 12 C -0.63 -13.50 5.94 -39.66 -0.24 -13.74 16 13 C -0.15 -3.18 9.53 -39.29 -0.37 -3.55 16 14 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 15 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 16 C 0.09 2.34 5.58 -106.83 -0.60 1.75 16 17 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 18 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 19 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.79 -19.40 10.95 55.55 0.61 -18.79 16 21 Si 0.91 17.92 29.60 -169.99 -5.03 12.89 16 22 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 C -0.12 -2.94 9.26 -38.88 -0.36 -3.30 16 26 C 0.08 0.80 3.77 -26.16 -0.10 0.70 16 27 H 0.10 1.01 7.69 -51.93 -0.40 0.61 16 28 C -0.17 -1.43 9.31 37.16 0.35 -1.08 16 29 O -0.37 -4.46 10.91 -35.23 -0.38 -4.85 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.03 7.72 -51.93 -0.40 0.63 16 35 H 0.07 1.00 8.04 -51.93 -0.42 0.59 16 36 H 0.08 0.98 7.75 -51.93 -0.40 0.57 16 37 H 0.41 4.73 8.35 -34.47 -0.29 4.45 16 38 H 0.11 2.01 7.61 -52.48 -0.40 1.61 16 39 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 40 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 41 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 42 H 0.11 2.53 7.60 -52.49 -0.40 2.13 16 43 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -30.51 380.13 -11.12 -41.63 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.78 Total: 9.62 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: -2.64 Total: -37.85 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.55 Total: -34.26 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -2.33 Total: -46.17 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: 49.03 SS G_CDS: -0.62 Total: 48.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.51 -11.12 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.028 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds