Wall clock time and date at job start Tue Mar 31 2020 23:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.55167 * 2 1 4 4 C 1.54994 * 110.61569 * 237.12567 * 2 1 3 5 5 C 1.54813 * 102.08907 * 204.47533 * 4 2 1 6 6 H 1.09002 * 110.48519 * 262.06920 * 5 4 2 7 7 C 1.53006 * 110.48920 * 139.55886 * 5 4 2 8 8 N 1.46501 * 109.47207 * 68.24127 * 7 5 4 9 9 S 1.65599 * 119.99951 * 165.00360 * 8 7 5 10 10 O 1.42102 * 106.40019 * 311.46131 * 9 8 7 11 11 O 1.42094 * 106.40228 * 178.54232 * 9 8 7 12 12 C 1.76198 * 107.21959 * 64.99879 * 9 8 7 13 13 C 1.38657 * 119.87611 * 270.29605 * 12 9 8 14 14 C 1.38609 * 120.49950 * 180.25549 * 13 12 9 15 15 C 1.37644 * 120.25134 * 359.44679 * 14 13 12 16 16 C 1.40695 * 119.73780 * 0.27849 * 15 14 13 17 17 C 1.41397 * 120.24129 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00283 * 204.39756 * 17 16 15 19 19 C 1.39942 * 120.00058 * 24.39026 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87057 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86546 * 19 17 16 22 22 H 1.48504 * 109.46865 * 90.00477 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00257 * 21 19 17 24 24 H 1.48499 * 109.47067 * 330.00626 * 21 19 17 25 25 C 1.37593 * 119.87583 * 90.00054 * 12 9 8 26 26 C 1.54100 * 104.30741 * 20.81243 * 5 4 2 27 27 H 1.09002 * 109.87544 * 121.52171 * 26 5 4 28 28 C 1.53001 * 109.87628 * 242.67431 * 26 5 4 29 29 O 1.44046 * 107.13434 * 2.13650 * 26 5 4 30 30 H 1.09004 * 109.47281 * 182.87715 * 1 2 3 31 31 H 1.09002 * 109.46950 * 302.87406 * 1 2 3 32 32 H 1.08997 * 109.47489 * 62.87552 * 1 2 3 33 33 H 1.09002 * 110.91181 * 86.27623 * 4 2 1 34 34 H 1.09003 * 110.91043 * 322.67005 * 4 2 1 35 35 H 1.09003 * 109.46655 * 308.24134 * 7 5 4 36 36 H 1.08994 * 109.47003 * 188.24173 * 7 5 4 37 37 H 0.97003 * 120.00082 * 344.99876 * 8 7 5 38 38 H 1.08005 * 119.75119 * 0.02562 * 13 12 9 39 39 H 1.08007 * 119.87443 * 179.72068 * 14 13 12 40 40 H 1.07994 * 120.13042 * 180.29192 * 15 14 13 41 41 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.13010 * 359.97438 * 25 12 9 43 43 H 1.08999 * 109.47152 * 60.00055 * 28 26 5 44 44 H 1.08997 * 109.46480 * 180.02562 * 28 26 5 45 45 H 1.09000 * 109.46986 * 299.99751 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7874 -1.2184 5 6 3.4794 -1.2156 -0.7254 6 1 4.2408 -0.5328 -1.1025 7 6 3.7854 -2.6501 -1.1608 8 7 3.9424 -2.6956 -2.6166 9 16 4.6358 -4.0175 -3.3337 10 8 5.8301 -4.2852 -2.6118 11 8 4.6117 -3.7735 -4.7333 12 6 3.5647 -5.3873 -3.0489 13 6 3.7271 -6.1667 -1.9137 14 6 2.8952 -7.2503 -1.6795 15 6 1.8899 -7.5576 -2.5680 16 6 1.7123 -6.7703 -3.7204 17 6 0.6833 -7.0766 -4.6405 18 1 0.7694 -6.7641 -5.6708 19 6 -0.4467 -7.7849 -4.2164 20 7 -0.7300 -7.8618 -2.9414 21 14 -1.5506 -8.6205 -5.4705 22 1 -1.0745 -10.0080 -5.7023 23 1 -2.9441 -8.6544 -4.9586 24 1 -1.5105 -7.8636 -6.7474 25 6 2.5664 -5.6758 -3.9508 26 6 3.3874 -1.1259 0.8102 27 1 3.6097 -2.0973 1.2521 28 6 4.3725 -0.0769 1.3300 29 8 2.0384 -0.7371 1.1326 30 1 -0.3634 -1.0264 0.0516 31 1 -0.3633 0.5578 0.8631 32 1 -0.3634 0.4685 -0.9146 33 1 2.1508 -0.1444 -2.0953 34 1 1.4549 -1.6584 -1.4285 35 1 2.9648 -3.3029 -0.8632 36 1 4.7072 -2.9853 -0.6853 37 1 3.6401 -1.9515 -3.1606 38 1 4.5100 -5.9298 -1.2084 39 1 3.0336 -7.8533 -0.7941 40 1 1.2399 -8.3996 -2.3812 41 1 -1.5135 -8.3525 -2.6474 42 1 2.4384 -5.0644 -4.8318 43 1 4.1307 0.8941 0.8979 44 1 4.3022 -0.0194 2.4162 45 1 5.3865 -0.3586 1.0463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591331898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:36 Heat of formation + Delta-G solvation = -140.433110 kcal Electronic energy + Delta-G solvation = -27711.640385 eV Core-core repulsion = 23819.101083 eV Total energy + Delta-G solvation = -3892.539302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87741 -39.44771 -38.27519 -36.91830 -36.67796 -35.67176 -33.51609 -32.81892 -31.91730 -31.58715 -29.77986 -27.36836 -27.08742 -23.98451 -23.67196 -22.80515 -22.02949 -21.52785 -20.50356 -19.60018 -18.43756 -17.91428 -17.73368 -17.14106 -16.78810 -16.75097 -16.48800 -15.89954 -15.51034 -15.24015 -15.13316 -15.00624 -14.33784 -14.31126 -14.10087 -13.76338 -13.62937 -13.38538 -13.33553 -13.28318 -13.16283 -13.08582 -13.04659 -12.81099 -12.71423 -12.64906 -12.60856 -12.32510 -12.20275 -11.71327 -11.64284 -11.58579 -11.54254 -11.34078 -11.15509 -10.58122 -10.42175 -9.85191 -9.56689 -8.73938 -6.45948 -0.48966 0.40522 0.83996 1.36758 1.45772 1.49661 2.12088 2.16830 2.54855 2.78177 2.91219 3.39790 3.51827 3.55129 3.66020 3.84696 4.08585 4.23878 4.29943 4.31145 4.42212 4.44198 4.46740 4.49361 4.57778 4.68679 4.76059 4.83924 4.87832 4.90005 4.92086 5.05115 5.06997 5.10178 5.17248 5.20119 5.26439 5.32229 5.35827 5.40881 5.56009 5.88573 5.93590 6.07106 6.08853 6.11597 6.52180 6.79277 6.84211 8.23811 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.003579 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.154587 B = 7821.627191 C = 9170.341790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.116 4.116 6 H 0.114 0.886 7 C 0.122 3.878 8 N -1.102 6.102 9 S 2.723 3.277 10 O -0.984 6.984 11 O -0.995 6.995 12 C -0.639 4.639 13 C -0.148 4.148 14 C -0.123 4.123 15 C -0.142 4.142 16 C 0.063 3.937 17 C -0.499 4.499 18 H 0.078 0.922 19 C 0.039 3.961 20 N -0.821 5.821 21 Si 0.982 3.018 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.145 4.145 26 C 0.072 3.928 27 H 0.094 0.906 28 C -0.164 4.164 29 O -0.393 6.393 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.426 0.574 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.292 0.708 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 14.377 6.611 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.103 0.897 4 C -0.190 4.190 5 C -0.136 4.136 6 H 0.132 0.868 7 C -0.004 4.004 8 N -0.865 5.865 9 S 2.815 3.185 10 O -0.974 6.974 11 O -0.985 6.985 12 C -0.727 4.727 13 C -0.169 4.169 14 C -0.142 4.142 15 C -0.162 4.162 16 C 0.059 3.941 17 C -0.528 4.528 18 H 0.096 0.904 19 C -0.177 4.177 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.190 1.190 24 H -0.183 1.183 25 C -0.166 4.166 26 C 0.014 3.986 27 H 0.112 0.888 28 C -0.222 4.222 29 O -0.313 6.313 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.263 0.737 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.017 14.097 6.637 16.091 hybrid contribution -1.396 -0.791 -0.583 1.707 sum 2.621 13.306 6.054 14.852 Atomic orbital electron populations 1.21806 0.93113 1.02355 1.03255 1.23231 0.95380 0.95639 0.84490 0.89732 1.23367 0.95229 1.01115 0.99330 1.22790 0.99173 0.96011 0.95675 0.86816 1.21494 1.02386 0.98134 0.78411 1.55147 1.81149 1.34488 1.15699 1.00696 0.73196 0.72790 0.71839 1.93495 1.44295 1.85425 1.74220 1.93503 1.87479 1.85415 1.32128 1.30270 1.16143 1.21357 1.04937 1.20473 1.01339 0.98178 0.96887 1.21149 0.95739 0.98052 0.99281 1.21643 0.98020 0.99964 0.96537 1.18036 0.92302 0.90453 0.93261 1.19866 1.02636 1.33089 0.97198 0.90368 1.26721 0.98980 0.94165 0.97811 1.69819 1.25349 1.31996 1.17471 0.85195 0.76909 0.79036 0.78594 1.18682 1.18984 1.18285 1.20855 0.97841 0.98730 0.99184 1.22891 0.83009 0.99315 0.93400 0.88798 1.22236 0.99151 0.98882 1.01912 1.88962 1.28200 1.73864 1.40313 0.93347 0.91654 0.89541 0.88016 0.91440 0.92145 0.89288 0.73704 0.84931 0.85640 0.86995 0.89755 0.87180 0.91711 0.91942 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.65 71.98 0.69 -1.94 16 2 C 0.07 1.27 3.92 31.28 0.12 1.40 16 3 H 0.08 1.25 8.13 -2.39 -0.02 1.23 16 4 C -0.15 -2.78 5.72 31.90 0.18 -2.60 16 5 C -0.12 -2.08 2.78 -9.80 -0.03 -2.11 16 6 H 0.11 1.58 7.70 -2.39 -0.02 1.56 16 7 C 0.12 2.81 5.33 86.38 0.46 3.27 16 8 N -1.10 -28.26 5.92 -187.48 -1.11 -29.37 16 9 S 2.72 95.62 5.73 -56.49 -0.32 95.29 16 10 O -0.98 -36.93 16.75 -128.00 -2.14 -39.08 16 11 O -0.99 -40.05 17.27 -128.00 -2.21 -42.26 16 12 C -0.64 -27.19 5.94 22.22 0.13 -27.06 16 13 C -0.15 -6.17 9.53 22.46 0.21 -5.95 16 14 C -0.12 -5.44 10.02 22.22 0.22 -5.22 16 15 C -0.14 -7.19 8.70 22.73 0.20 -7.00 16 16 C 0.06 3.32 5.58 -21.29 -0.12 3.20 16 17 C -0.50 -26.37 9.05 23.46 0.21 -26.16 16 18 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 19 C 0.04 1.90 5.14 85.25 0.44 2.34 16 20 N -0.82 -41.10 10.95 21.83 0.24 -40.86 16 21 Si 0.98 37.09 29.60 68.60 2.03 39.12 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 23 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 24 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 25 C -0.15 -7.06 9.26 22.73 0.21 -6.85 16 26 C 0.07 1.36 3.77 30.97 0.12 1.47 16 27 H 0.09 1.81 7.69 -2.39 -0.02 1.79 16 28 C -0.16 -2.35 9.31 71.98 0.67 -1.68 16 29 O -0.39 -9.09 10.91 -148.98 -1.63 -10.72 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.53 7.72 -2.39 -0.02 1.51 16 35 H 0.06 1.59 8.04 -2.39 -0.02 1.57 16 36 H 0.09 1.94 7.75 -2.39 -0.02 1.92 16 37 H 0.43 8.81 8.35 -96.74 -0.81 8.00 16 38 H 0.13 4.75 7.61 -2.91 -0.02 4.72 16 39 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 40 H 0.11 5.85 6.15 -2.91 -0.02 5.83 16 41 H 0.29 13.13 8.30 -92.70 -0.77 12.36 16 42 H 0.11 5.20 7.60 -2.91 -0.02 5.18 16 43 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -66.43 380.13 -1.23 -67.66 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.19 Total: 35.07 kcal Atomic # 6 Polarization: -78.60 SS G_CDS: 3.73 Total: -74.87 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -0.87 Total: -70.23 kcal Atomic # 8 Polarization: -86.07 SS G_CDS: -5.98 Total: -92.05 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Atomic # 16 Polarization: 95.62 SS G_CDS: -0.32 Total: 95.29 kcal Total: -66.43 -1.23 -67.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.773 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds