Wall clock time and date at job start Tue Mar 31 2020 23:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99895 * 2 1 4 4 C 1.52995 * 112.85238 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47236 * 173.79849 * 4 3 2 6 6 C 1.53001 * 109.47143 * 293.80466 * 4 3 2 7 7 N 1.46506 * 109.47127 * 53.80143 * 4 3 2 8 8 S 1.65604 * 119.99922 * 144.99986 * 7 4 3 9 9 O 1.42094 * 106.40388 * 311.46032 * 8 7 4 10 10 O 1.42097 * 106.39909 * 178.53987 * 8 7 4 11 11 C 1.76204 * 107.21812 * 65.00263 * 8 7 4 12 12 C 1.38648 * 119.87216 * 269.72724 * 11 8 7 13 13 C 1.38618 * 120.50108 * 179.72383 * 12 11 8 14 14 C 1.37646 * 120.24334 * 0.54526 * 13 12 11 15 15 C 1.40692 * 119.74541 * 359.73073 * 14 13 12 16 16 C 1.41399 * 120.24470 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99599 * 204.37120 * 16 15 14 18 18 C 1.39940 * 119.99870 * 24.36370 * 16 15 14 19 19 N 1.30822 * 120.00180 * 17.87005 * 18 16 15 20 20 Si 1.86800 * 119.99922 * 197.86028 * 18 16 15 21 21 H 1.48509 * 109.46660 * 60.00779 * 20 18 16 22 22 H 1.48500 * 109.47118 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47424 * 300.00632 * 20 18 16 24 24 C 1.37596 * 119.87513 * 89.99547 * 11 8 7 25 25 C 1.53782 * 113.68692 * 311.26693 * 3 2 1 26 26 C 1.53774 * 87.08279 * 89.12816 * 25 3 2 27 27 C 1.53778 * 113.61449 * 48.79894 * 3 2 1 28 28 H 1.08998 * 109.47316 * 300.00376 * 1 2 3 29 29 H 1.09004 * 109.47210 * 60.00417 * 1 2 3 30 30 H 1.09003 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46896 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.46858 * 299.99800 * 6 4 3 33 33 H 1.08992 * 109.47373 * 59.99818 * 6 4 3 34 34 H 0.96993 * 120.00009 * 325.00338 * 7 4 3 35 35 H 1.08001 * 119.75626 * 359.97438 * 12 11 8 36 36 H 1.07993 * 119.88183 * 180.25547 * 13 12 11 37 37 H 1.07998 * 120.12381 * 179.70769 * 14 13 12 38 38 H 0.96999 * 120.00049 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.13020 * 359.97438 * 24 11 8 40 40 H 1.09005 * 113.61036 * 203.67563 * 25 3 2 41 41 H 1.09000 * 113.61724 * 334.57421 * 25 3 2 42 42 H 1.08997 * 113.61530 * 270.88137 * 26 25 3 43 43 H 1.08999 * 113.61561 * 139.98153 * 26 25 3 44 44 H 1.09001 * 113.61612 * 25.35330 * 27 3 2 45 45 H 1.09007 * 113.61525 * 156.25470 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5398 1.2749 0.0006 5 1 3.9236 2.2891 -0.1104 6 6 4.0375 0.6828 1.3207 7 7 4.0122 0.4493 -1.1137 8 16 5.4046 0.8554 -1.9130 9 8 5.3032 2.2396 -2.2176 10 8 5.6061 -0.1452 -2.9015 11 6 6.7311 0.6946 -0.7644 12 6 7.1090 1.7803 0.0106 13 6 8.1470 1.6667 0.9223 14 6 8.8219 0.4749 1.0594 15 6 8.4509 -0.6318 0.2741 16 6 9.1366 -1.8612 0.4067 17 1 9.1473 -2.5647 -0.4127 18 6 9.8016 -2.1663 1.5996 19 7 9.5151 -1.5102 2.6945 20 14 11.0982 -3.5107 1.6287 21 1 12.1925 -3.1634 0.6867 22 1 11.6485 -3.6381 3.0021 23 1 10.4841 -4.7996 1.2204 24 6 7.3917 -0.5064 -0.6442 25 6 1.4129 2.2477 -1.0585 26 6 0.3745 2.6521 0.0011 27 6 1.4128 2.2457 1.0601 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 5.1273 0.6614 1.3213 32 1 3.6861 1.2970 2.1498 33 1 3.6538 -0.3313 1.4317 34 1 3.5094 -0.3351 -1.3833 35 1 6.5881 2.7206 -0.0937 36 1 8.4303 2.5176 1.5239 37 1 9.6334 0.3899 1.7670 38 1 9.9757 -1.7219 3.5215 39 1 7.0983 -1.3497 -1.2517 40 1 2.0809 3.0592 -1.3473 41 1 0.9834 1.7267 -1.9143 42 1 -0.5170 2.0250 0.0005 43 1 0.1438 3.7174 0.0021 44 1 0.9833 1.7232 1.9149 45 1 2.0807 3.0568 1.3506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591332468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:26 Heat of formation + Delta-G solvation = -74.680195 kcal Electronic energy + Delta-G solvation = -28441.874048 eV Core-core repulsion = 24552.186006 eV Total energy + Delta-G solvation = -3889.688042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.76652 -37.64500 -36.65915 -35.62102 -35.25956 -34.84890 -33.83351 -30.08363 -29.87476 -29.69082 -27.60223 -25.86952 -25.46931 -24.46926 -21.86422 -21.55115 -20.96568 -20.14670 -18.97400 -17.93366 -17.28379 -16.64341 -16.12866 -15.86881 -15.28621 -15.24956 -15.06617 -14.80049 -14.42676 -13.67830 -13.66905 -13.48446 -13.41627 -13.33505 -12.67760 -12.55692 -12.37065 -12.26100 -12.05792 -11.77789 -11.61294 -11.53943 -11.51053 -11.36126 -11.32833 -11.22906 -10.98604 -10.91781 -10.85699 -10.64342 -10.57929 -10.20661 -9.76798 -9.62861 -9.51126 -9.32522 -9.04738 -8.00959 -7.68300 -6.91576 -4.51890 1.08311 2.22045 2.65711 3.00358 3.02816 3.09650 3.44613 3.67426 3.83983 4.27673 4.30822 4.35245 4.48581 4.53580 4.65587 5.03214 5.07489 5.16350 5.19525 5.39794 5.42440 5.43843 5.49466 5.57305 5.58923 5.71580 5.73995 5.77166 5.85265 6.06543 6.08469 6.16565 6.18922 6.37350 6.66739 6.68024 6.78065 6.87531 7.04740 7.11698 7.22934 7.37284 7.41047 7.74276 7.82639 7.96121 8.41831 8.68439 8.73488 10.03741 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.003380 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.291058 B = 8281.582022 C = 8705.550171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.352 6.352 3 C 0.095 3.905 4 C 0.181 3.819 5 H 0.101 0.899 6 C -0.176 4.176 7 N -1.110 6.110 8 S 2.686 3.314 9 O -0.978 6.978 10 O -0.974 6.974 11 C -0.629 4.629 12 C -0.150 4.150 13 C -0.120 4.120 14 C -0.119 4.119 15 C 0.093 3.907 16 C -0.461 4.461 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.121 4.121 25 C -0.166 4.166 26 C -0.162 4.162 27 C -0.161 4.161 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.419 0.581 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.283 0.717 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.917 5.156 0.214 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.270 6.270 3 C 0.054 3.946 4 C 0.073 3.927 5 H 0.119 0.881 6 C -0.235 4.235 7 N -0.868 5.868 8 S 2.782 3.218 9 O -0.968 6.968 10 O -0.964 6.964 11 C -0.721 4.721 12 C -0.171 4.171 13 C -0.139 4.139 14 C -0.139 4.139 15 C 0.089 3.911 16 C -0.490 4.490 17 H 0.100 0.900 18 C -0.142 4.142 19 N -0.419 5.419 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.143 4.143 25 C -0.203 4.203 26 C -0.199 4.199 27 C -0.199 4.199 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.253 0.747 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.622 5.409 -0.380 15.595 hybrid contribution 0.479 -0.911 0.831 1.323 sum -14.143 4.498 0.451 14.848 Atomic orbital electron populations 1.23060 0.81724 1.02439 1.00235 1.87919 1.19291 1.25444 1.94327 1.22797 0.92744 0.83237 0.95859 1.20671 0.90069 0.94908 0.87044 0.88089 1.22355 1.03559 1.02014 0.95563 1.55496 1.42716 1.40489 1.48074 1.01690 0.73088 0.73169 0.73810 1.93500 1.86542 1.33497 1.83233 1.93534 1.85526 1.60319 1.57043 1.29727 1.20375 1.01986 1.20031 1.20034 1.01721 0.95876 0.99440 1.20790 0.97334 0.97316 0.98474 1.21620 0.99843 0.91317 1.01140 1.17664 0.89842 0.93149 0.90419 1.19597 1.27649 1.02183 0.99568 0.89972 1.25916 0.96256 0.97299 0.94739 1.69770 1.34831 1.37249 1.00020 0.86309 0.80940 0.81024 0.78201 1.18699 1.20268 1.18831 1.20772 0.97103 0.94414 1.01975 1.23619 0.98881 1.00175 0.97674 1.23324 0.97725 1.02129 0.96679 1.23553 0.98842 0.99906 0.97619 0.93405 0.93408 0.89881 0.90200 0.91984 0.91432 0.74711 0.87736 0.88482 0.85825 0.90563 0.87103 0.88365 0.90763 0.89121 0.91032 0.90540 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.17 101.05 0.93 1.11 16 2 O -0.35 -4.21 9.97 -35.23 -0.35 -4.56 16 3 C 0.10 1.10 1.06 -89.81 -0.10 1.01 16 4 C 0.18 2.49 2.50 -67.93 -0.17 2.32 16 5 H 0.10 1.37 7.41 -51.93 -0.38 0.98 16 6 C -0.18 -2.55 9.30 37.16 0.35 -2.21 16 7 N -1.11 -17.09 5.46 -4.89 -0.03 -17.11 16 8 S 2.69 51.07 5.72 -107.50 -0.61 50.46 16 9 O -0.98 -19.68 16.60 -57.17 -0.95 -20.63 16 10 O -0.97 -20.97 17.27 -57.17 -0.99 -21.95 16 11 C -0.63 -13.57 5.05 -39.66 -0.20 -13.77 16 12 C -0.15 -3.15 8.61 -39.29 -0.34 -3.49 16 13 C -0.12 -2.62 10.02 -39.66 -0.40 -3.02 16 14 C -0.12 -2.93 8.70 -38.87 -0.34 -3.27 16 15 C 0.09 2.38 5.58 -106.83 -0.60 1.78 16 16 C -0.46 -11.81 9.05 -37.74 -0.34 -12.15 16 17 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 18 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -19.45 10.95 55.55 0.61 -18.84 16 20 Si 0.91 18.08 29.60 -169.99 -5.03 13.05 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.12 -2.90 9.26 -38.87 -0.36 -3.26 16 25 C -0.17 -1.74 6.89 -25.92 -0.18 -1.92 16 26 C -0.16 -1.35 7.30 -25.92 -0.19 -1.54 16 27 C -0.16 -1.51 6.15 -25.92 -0.16 -1.67 16 28 H 0.05 0.36 5.85 -51.93 -0.30 0.06 16 29 H 0.05 0.37 5.86 -51.93 -0.30 0.07 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.37 6.18 -51.93 -0.32 1.05 16 32 H 0.06 0.76 7.61 -51.93 -0.39 0.37 16 33 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 34 H 0.42 5.93 8.34 -34.47 -0.29 5.64 16 35 H 0.10 1.97 7.59 -52.49 -0.40 1.58 16 36 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 38 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 39 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 40 H 0.10 1.07 8.04 -51.93 -0.42 0.66 16 41 H 0.07 0.76 7.48 -51.93 -0.39 0.38 16 42 H 0.09 0.66 4.83 -51.93 -0.25 0.40 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.68 7.48 -51.93 -0.39 0.30 16 45 H 0.10 0.85 8.10 -51.92 -0.42 0.43 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -29.91 367.75 -10.21 -40.12 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -6.22 Total: 12.26 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: -2.18 Total: -38.32 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.58 Total: -35.96 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -2.29 Total: -47.14 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 51.07 SS G_CDS: -0.61 Total: 50.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.91 -10.21 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591332468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.564 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds