Wall clock time and date at job start Tue Mar 31 2020 23:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99895 * 2 1 4 4 C 1.52995 * 112.85238 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47236 * 173.79849 * 4 3 2 6 6 C 1.53001 * 109.47143 * 293.80466 * 4 3 2 7 7 N 1.46506 * 109.47127 * 53.80143 * 4 3 2 8 8 S 1.65604 * 119.99922 * 144.99986 * 7 4 3 9 9 O 1.42094 * 106.40388 * 311.46032 * 8 7 4 10 10 O 1.42097 * 106.39909 * 178.53987 * 8 7 4 11 11 C 1.76204 * 107.21812 * 65.00263 * 8 7 4 12 12 C 1.38648 * 119.87216 * 269.72724 * 11 8 7 13 13 C 1.38618 * 120.50108 * 179.72383 * 12 11 8 14 14 C 1.37646 * 120.24334 * 0.54526 * 13 12 11 15 15 C 1.40692 * 119.74541 * 359.73073 * 14 13 12 16 16 C 1.41399 * 120.24470 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99599 * 204.37120 * 16 15 14 18 18 C 1.39940 * 119.99870 * 24.36370 * 16 15 14 19 19 N 1.30822 * 120.00180 * 17.87005 * 18 16 15 20 20 Si 1.86800 * 119.99922 * 197.86028 * 18 16 15 21 21 H 1.48509 * 109.46660 * 60.00779 * 20 18 16 22 22 H 1.48500 * 109.47118 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47424 * 300.00632 * 20 18 16 24 24 C 1.37596 * 119.87513 * 89.99547 * 11 8 7 25 25 C 1.53782 * 113.68692 * 311.26693 * 3 2 1 26 26 C 1.53774 * 87.08279 * 89.12816 * 25 3 2 27 27 C 1.53778 * 113.61449 * 48.79894 * 3 2 1 28 28 H 1.08998 * 109.47316 * 300.00376 * 1 2 3 29 29 H 1.09004 * 109.47210 * 60.00417 * 1 2 3 30 30 H 1.09003 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46896 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.46858 * 299.99800 * 6 4 3 33 33 H 1.08992 * 109.47373 * 59.99818 * 6 4 3 34 34 H 0.96993 * 120.00009 * 325.00338 * 7 4 3 35 35 H 1.08001 * 119.75626 * 359.97438 * 12 11 8 36 36 H 1.07993 * 119.88183 * 180.25547 * 13 12 11 37 37 H 1.07998 * 120.12381 * 179.70769 * 14 13 12 38 38 H 0.96999 * 120.00049 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.13020 * 359.97438 * 24 11 8 40 40 H 1.09005 * 113.61036 * 203.67563 * 25 3 2 41 41 H 1.09000 * 113.61724 * 334.57421 * 25 3 2 42 42 H 1.08997 * 113.61530 * 270.88137 * 26 25 3 43 43 H 1.08999 * 113.61561 * 139.98153 * 26 25 3 44 44 H 1.09001 * 113.61612 * 25.35330 * 27 3 2 45 45 H 1.09007 * 113.61525 * 156.25470 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5398 1.2749 0.0006 5 1 3.9236 2.2891 -0.1104 6 6 4.0375 0.6828 1.3207 7 7 4.0122 0.4493 -1.1137 8 16 5.4046 0.8554 -1.9130 9 8 5.3032 2.2396 -2.2176 10 8 5.6061 -0.1452 -2.9015 11 6 6.7311 0.6946 -0.7644 12 6 7.1090 1.7803 0.0106 13 6 8.1470 1.6667 0.9223 14 6 8.8219 0.4749 1.0594 15 6 8.4509 -0.6318 0.2741 16 6 9.1366 -1.8612 0.4067 17 1 9.1473 -2.5647 -0.4127 18 6 9.8016 -2.1663 1.5996 19 7 9.5151 -1.5102 2.6945 20 14 11.0982 -3.5107 1.6287 21 1 12.1925 -3.1634 0.6867 22 1 11.6485 -3.6381 3.0021 23 1 10.4841 -4.7996 1.2204 24 6 7.3917 -0.5064 -0.6442 25 6 1.4129 2.2477 -1.0585 26 6 0.3745 2.6521 0.0011 27 6 1.4128 2.2457 1.0601 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 5.1273 0.6614 1.3213 32 1 3.6861 1.2970 2.1498 33 1 3.6538 -0.3313 1.4317 34 1 3.5094 -0.3351 -1.3833 35 1 6.5881 2.7206 -0.0937 36 1 8.4303 2.5176 1.5239 37 1 9.6334 0.3899 1.7670 38 1 9.9757 -1.7219 3.5215 39 1 7.0983 -1.3497 -1.2517 40 1 2.0809 3.0592 -1.3473 41 1 0.9834 1.7267 -1.9143 42 1 -0.5170 2.0250 0.0005 43 1 0.1438 3.7174 0.0021 44 1 0.9833 1.7232 1.9149 45 1 2.0807 3.0568 1.3506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591332468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:25 Heat of formation + Delta-G solvation = -94.308924 kcal Electronic energy + Delta-G solvation = -28442.725213 eV Core-core repulsion = 24552.186006 eV Total energy + Delta-G solvation = -3890.539208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58113 -39.44507 -38.28583 -36.91470 -36.74001 -35.71861 -35.63427 -31.90149 -31.58478 -30.96746 -28.39064 -27.32523 -26.63074 -25.32763 -23.63925 -22.81265 -22.49368 -21.05690 -20.45397 -19.59089 -18.63814 -17.87334 -17.63003 -17.04082 -16.81448 -16.59163 -16.38248 -16.00665 -15.74219 -15.25149 -15.04583 -14.60682 -14.58066 -14.36382 -14.28515 -13.90294 -13.61943 -13.34215 -13.20193 -13.09135 -13.06873 -13.06025 -13.03524 -12.91610 -12.74520 -12.69430 -12.56845 -12.38216 -12.20354 -11.66271 -11.55037 -11.46510 -11.31947 -11.12349 -11.05007 -10.38278 -10.25842 -9.80113 -9.52831 -8.72008 -6.43525 -0.48133 0.43129 0.87245 1.37160 1.46241 1.49812 2.10453 2.17922 2.56663 2.73359 2.80771 3.41326 3.53021 3.54819 3.56865 3.72231 3.91898 4.15268 4.32355 4.38598 4.43872 4.47861 4.52347 4.56056 4.62437 4.82948 4.83724 4.86270 4.86808 4.92508 4.96639 5.02481 5.07901 5.08956 5.13098 5.20075 5.23384 5.38994 5.43042 5.46989 5.59082 5.90998 5.95618 6.10488 6.13646 6.36395 6.54320 6.81259 6.86689 8.25539 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.003380 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.291058 B = 8281.582022 C = 8705.550171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.375 6.375 3 C 0.089 3.911 4 C 0.173 3.827 5 H 0.107 0.893 6 C -0.172 4.172 7 N -1.097 6.097 8 S 2.714 3.286 9 O -0.983 6.983 10 O -1.000 7.000 11 C -0.633 4.633 12 C -0.142 4.142 13 C -0.120 4.120 14 C -0.140 4.140 15 C 0.065 3.935 16 C -0.501 4.501 17 H 0.076 0.924 18 C 0.040 3.960 19 N -0.819 5.819 20 Si 0.980 3.020 21 H -0.262 1.262 22 H -0.264 1.264 23 H -0.261 1.261 24 C -0.144 4.144 25 C -0.172 4.172 26 C -0.149 4.149 27 C -0.158 4.158 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.425 0.575 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.292 0.708 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.542 6.222 0.825 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.294 6.294 3 C 0.048 3.952 4 C 0.066 3.934 5 H 0.124 0.876 6 C -0.230 4.230 7 N -0.858 5.858 8 S 2.807 3.193 9 O -0.973 6.973 10 O -0.990 6.990 11 C -0.722 4.722 12 C -0.163 4.163 13 C -0.139 4.139 14 C -0.159 4.159 15 C 0.062 3.938 16 C -0.531 4.531 17 H 0.094 0.906 18 C -0.175 4.175 19 N -0.445 5.445 20 Si 0.801 3.199 21 H -0.186 1.186 22 H -0.188 1.188 23 H -0.186 1.186 24 C -0.166 4.166 25 C -0.209 4.209 26 C -0.186 4.186 27 C -0.196 4.196 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.262 0.738 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.240 6.483 0.244 17.487 hybrid contribution 0.838 -1.156 0.632 1.562 sum -15.401 5.327 0.876 16.320 Atomic orbital electron populations 1.23261 0.80031 1.03470 1.01312 1.87878 1.21195 1.25712 1.94591 1.22807 0.90888 0.83779 0.97765 1.20931 0.92261 0.94540 0.85685 0.87563 1.22294 1.01481 1.02224 0.97045 1.55212 1.40993 1.41124 1.48471 1.00889 0.72889 0.72542 0.72957 1.93488 1.86708 1.33832 1.83239 1.93494 1.86129 1.61143 1.58239 1.30152 1.20927 1.01180 1.19981 1.20415 1.00962 0.96662 0.98228 1.21124 0.96850 0.97312 0.98602 1.21626 1.00535 0.92266 1.01514 1.17992 0.90631 0.93804 0.91387 1.19825 1.29974 1.02762 1.00496 0.90630 1.26677 0.97558 0.99494 0.93817 1.69800 1.35588 1.38513 1.00569 0.85273 0.77978 0.77965 0.78686 1.18639 1.18794 1.18557 1.20800 0.97728 0.95470 1.02558 1.23658 0.99566 0.99731 0.97990 1.23296 0.97389 1.03183 0.94698 1.23584 0.99063 0.99402 0.97562 0.92047 0.92488 0.89054 0.93159 0.89656 0.92248 0.73844 0.84936 0.85456 0.86958 0.89750 0.87754 0.88954 0.90849 0.87782 0.89786 0.89874 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.17 113.37 1.04 1.26 16 2 O -0.37 -8.31 9.97 -148.98 -1.49 -9.79 16 3 C 0.09 1.88 1.06 -10.27 -0.01 1.87 16 4 C 0.17 4.52 2.50 44.99 0.11 4.63 16 5 H 0.11 2.67 7.41 -2.38 -0.02 2.65 16 6 C -0.17 -4.83 9.30 71.98 0.67 -4.16 16 7 N -1.10 -33.05 5.46 -169.38 -0.93 -33.97 16 8 S 2.71 102.13 5.72 -56.49 -0.32 101.80 16 9 O -0.98 -38.15 16.60 -128.00 -2.12 -40.27 16 10 O -1.00 -43.35 17.27 -128.00 -2.21 -45.56 16 11 C -0.63 -27.48 5.05 22.22 0.11 -27.37 16 12 C -0.14 -5.85 8.61 22.46 0.19 -5.66 16 13 C -0.12 -5.20 10.02 22.22 0.22 -4.97 16 14 C -0.14 -7.03 8.70 22.73 0.20 -6.83 16 15 C 0.07 3.47 5.58 -21.29 -0.12 3.35 16 16 C -0.50 -26.87 9.05 23.46 0.21 -26.66 16 17 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 18 C 0.04 1.98 5.14 85.26 0.44 2.42 16 19 N -0.82 -41.03 10.95 21.82 0.24 -40.79 16 20 Si 0.98 37.53 29.60 68.60 2.03 39.56 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 24 C -0.14 -7.18 9.26 22.73 0.21 -6.97 16 25 C -0.17 -3.20 6.89 31.12 0.21 -2.98 16 26 C -0.15 -2.00 7.30 31.12 0.23 -1.77 16 27 C -0.16 -2.49 6.15 31.12 0.19 -2.30 16 28 H 0.06 0.74 5.85 -2.39 -0.01 0.72 16 29 H 0.06 0.73 5.86 -2.38 -0.01 0.72 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.71 6.18 -2.39 -0.01 1.70 16 32 H 0.08 1.96 7.61 -2.39 -0.02 1.94 16 33 H 0.06 1.74 8.01 -2.39 -0.02 1.72 16 34 H 0.43 11.87 8.34 -96.75 -0.81 11.06 16 35 H 0.13 4.69 7.59 -2.91 -0.02 4.66 16 36 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 37 H 0.11 5.82 6.16 -2.91 -0.02 5.80 16 38 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 39 H 0.10 5.15 7.60 -2.91 -0.02 5.13 16 40 H 0.09 1.82 8.04 -2.38 -0.02 1.80 16 41 H 0.07 1.36 7.48 -2.39 -0.02 1.34 16 42 H 0.10 1.12 4.83 -2.39 -0.01 1.11 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.22 7.48 -2.39 -0.02 1.20 16 45 H 0.10 1.49 8.10 -2.38 -0.02 1.47 16 Total: -1.00 -65.44 367.75 -0.67 -66.11 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: 0.21 Total: 39.06 kcal Atomic # 6 Polarization: -80.06 SS G_CDS: 3.91 Total: -76.15 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -0.69 Total: -74.77 kcal Atomic # 8 Polarization: -89.81 SS G_CDS: -5.82 Total: -95.62 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 16 Polarization: 102.13 SS G_CDS: -0.32 Total: 101.80 kcal Total: -65.44 -0.67 -66.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591332468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.195 kcal (2) G-P(sol) polarization free energy of solvation -65.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds