Wall clock time and date at job start Tue Mar 31 2020 23:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00420 * 2 1 4 4 C 1.52998 * 112.85403 * 179.97438 * 3 2 1 5 5 H 1.08989 * 109.47230 * 170.32824 * 4 3 2 6 6 C 1.53005 * 109.46745 * 50.33443 * 4 3 2 7 7 N 1.46500 * 109.47248 * 290.33626 * 4 3 2 8 8 S 1.65597 * 119.99829 * 214.72254 * 7 4 3 9 9 O 1.42101 * 106.40440 * 178.81358 * 8 7 4 10 10 O 1.42098 * 106.40441 * 311.73424 * 8 7 4 11 11 C 1.76201 * 107.21969 * 65.27423 * 8 7 4 12 12 C 1.38659 * 119.87455 * 269.72731 * 11 8 7 13 13 C 1.38612 * 120.49801 * 179.71569 * 12 11 8 14 14 C 1.37635 * 120.25038 * 0.55942 * 13 12 11 15 15 C 1.40701 * 119.74300 * 359.71931 * 14 13 12 16 16 C 1.41398 * 120.24200 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99743 * 155.24564 * 16 15 14 18 18 C 1.39944 * 120.00244 * 335.25459 * 16 15 14 19 19 N 1.30827 * 119.99622 * 342.24483 * 18 16 15 20 20 Si 1.86801 * 119.99976 * 162.24563 * 18 16 15 21 21 H 1.48500 * 109.46960 * 89.99784 * 20 18 16 22 22 H 1.48500 * 109.46869 * 209.99751 * 20 18 16 23 23 H 1.48497 * 109.46971 * 329.99901 * 20 18 16 24 24 C 1.37591 * 119.87563 * 89.99588 * 11 8 7 25 25 C 1.53777 * 113.61288 * 311.19387 * 3 2 1 26 26 C 1.53957 * 87.02285 * 89.22675 * 25 3 2 27 27 C 1.53785 * 87.10953 * 25.36280 * 26 25 3 28 28 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47191 * 300.00420 * 1 2 3 30 30 H 1.09003 * 109.46689 * 60.00387 * 1 2 3 31 31 H 1.09004 * 109.47184 * 299.99886 * 6 4 3 32 32 H 1.09001 * 109.47288 * 59.99708 * 6 4 3 33 33 H 1.09002 * 109.46914 * 180.02562 * 6 4 3 34 34 H 0.96998 * 119.99971 * 34.99617 * 7 4 3 35 35 H 1.07998 * 119.74713 * 0.02562 * 12 11 8 36 36 H 1.08000 * 119.87472 * 180.25404 * 13 12 11 37 37 H 1.08002 * 120.13173 * 179.74254 * 14 13 12 38 38 H 0.97001 * 119.99255 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.12668 * 359.97438 * 24 11 8 40 40 H 1.08995 * 113.61619 * 203.74899 * 25 3 2 41 41 H 1.09000 * 113.61353 * 334.64901 * 25 3 2 42 42 H 1.09006 * 113.53444 * 270.81681 * 26 25 3 43 43 H 1.08990 * 113.74643 * 139.94124 * 26 25 3 44 44 H 1.09001 * 113.61361 * 220.09532 * 27 26 25 45 45 H 1.08997 * 113.69145 * 89.19641 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5400 1.2747 0.0006 5 1 3.9237 2.2801 -0.1720 6 6 4.0318 0.3437 -1.1095 7 7 4.0181 0.7852 1.2960 8 16 5.4176 1.3886 1.9439 9 8 5.5906 0.7426 3.1976 10 8 6.3894 1.3481 0.9080 11 6 5.1371 3.0921 2.2965 12 6 5.4168 4.0515 1.3353 13 6 5.1955 5.3946 1.5968 14 6 4.7056 5.7913 2.8203 15 6 4.4236 4.8269 3.8053 16 6 3.9194 5.2226 5.0656 17 1 3.3406 4.5290 5.6576 18 6 4.1702 6.5129 5.5459 19 7 5.1329 7.2292 5.0247 20 14 3.1303 7.2124 6.9312 21 1 3.7524 6.8740 8.2365 22 1 3.0467 8.6884 6.7905 23 1 1.7654 6.6309 6.8677 24 6 4.6466 3.4656 3.5265 25 6 1.4132 2.2456 -1.0603 26 6 0.3747 2.6522 0.0011 27 6 1.4130 2.2457 1.0602 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.6481 -0.6619 -0.9369 32 1 3.6760 0.7078 -2.0733 33 1 5.1216 0.3214 -1.1088 34 1 3.5170 0.1049 1.7724 35 1 5.8052 3.7495 0.3739 36 1 5.4130 6.1331 0.8394 37 1 4.5378 6.8387 3.0234 38 1 5.3070 8.1234 5.3579 39 1 4.4331 2.7170 4.2751 40 1 2.0811 3.0565 -1.3507 41 1 0.9836 1.7231 -1.9150 42 1 -0.5168 2.0250 0.0005 43 1 0.1430 3.7172 0.0031 44 1 0.9833 1.7232 1.9149 45 1 2.0815 3.0558 1.3517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591332469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:30 Heat of formation + Delta-G solvation = -75.300796 kcal Electronic energy + Delta-G solvation = -28764.114100 eV Core-core repulsion = 24874.399147 eV Total energy + Delta-G solvation = -3889.714953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.68431 -37.66526 -36.67377 -35.65217 -35.24992 -34.74075 -33.86434 -30.10343 -29.91927 -29.80092 -27.55028 -25.72475 -25.51362 -24.53448 -21.91654 -21.51293 -20.98209 -20.07183 -19.01997 -17.93426 -17.20210 -16.63515 -16.13509 -15.93297 -15.31262 -15.18003 -15.11765 -14.78273 -14.44034 -13.68646 -13.58895 -13.51497 -13.39712 -13.29618 -12.68037 -12.57244 -12.35497 -12.21295 -12.01757 -11.93828 -11.58974 -11.48482 -11.44831 -11.40901 -11.35163 -11.30646 -11.05106 -10.88399 -10.82176 -10.63829 -10.51502 -10.23229 -9.78956 -9.62611 -9.47569 -9.36274 -9.09739 -8.05629 -7.72238 -6.94457 -4.55449 1.05248 2.18220 2.61344 2.98305 2.99866 3.06180 3.52533 3.58152 3.81136 4.26105 4.39496 4.43615 4.50844 4.61647 4.79350 5.02147 5.08037 5.19751 5.23017 5.36382 5.41988 5.44341 5.49959 5.58781 5.69738 5.73851 5.85295 5.90069 5.99167 6.01805 6.04260 6.15192 6.23491 6.34287 6.43670 6.64237 6.74165 6.83550 7.01332 7.15952 7.19049 7.30189 7.36875 7.70171 7.78409 7.92213 8.37963 8.64914 8.69692 10.01152 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004180 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.870001 B = 6697.166284 C = 7758.012522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.355 6.355 3 C 0.091 3.909 4 C 0.182 3.818 5 H 0.100 0.900 6 C -0.168 4.168 7 N -1.112 6.112 8 S 2.685 3.315 9 O -0.973 6.973 10 O -0.973 6.973 11 C -0.631 4.631 12 C -0.152 4.152 13 C -0.120 4.120 14 C -0.119 4.119 15 C 0.093 3.907 16 C -0.460 4.460 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.793 5.793 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.122 4.122 25 C -0.160 4.160 26 C -0.161 4.161 27 C -0.161 4.161 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.417 0.583 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.284 0.716 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.581 -7.061 -10.107 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.273 6.273 3 C 0.050 3.950 4 C 0.074 3.926 5 H 0.118 0.882 6 C -0.227 4.227 7 N -0.869 5.869 8 S 2.781 3.219 9 O -0.963 6.963 10 O -0.963 6.963 11 C -0.722 4.722 12 C -0.173 4.173 13 C -0.139 4.139 14 C -0.138 4.138 15 C 0.089 3.911 16 C -0.489 4.489 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.418 5.418 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.144 4.144 25 C -0.199 4.199 26 C -0.198 4.198 27 C -0.199 4.199 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.251 0.749 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.141 0.859 38 H 0.095 0.905 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.452 -7.379 -10.033 15.051 hybrid contribution -1.201 1.150 0.962 1.921 sum -9.653 -6.229 -9.072 14.638 Atomic orbital electron populations 1.23051 0.81717 1.02221 1.00460 1.87892 1.19322 1.25668 1.94430 1.22834 0.92592 0.83138 0.96434 1.20604 0.90273 0.98532 0.83152 0.88229 1.22236 1.02391 1.00572 0.97455 1.55599 1.46235 1.54864 1.30191 1.01795 0.72605 0.74706 0.72792 1.93539 1.84672 1.75313 1.42793 1.93513 1.57256 1.87422 1.58150 1.29765 1.17885 1.21156 1.03438 1.20084 1.06602 0.93065 0.97558 1.20798 1.01204 0.94731 0.97178 1.21618 1.00415 1.00281 0.91531 1.17669 0.89824 0.90516 0.93062 1.19599 1.29739 0.97591 1.01998 0.89988 1.25931 0.93833 0.96642 0.97889 1.69785 1.23044 1.10698 1.38244 0.86269 0.81167 0.78383 0.80748 1.19293 1.19997 1.18344 1.20742 1.02415 0.97131 0.94086 1.23573 0.99141 0.99782 0.97376 1.23335 0.97580 1.02343 0.96574 1.23561 0.98808 1.00201 0.97309 0.90068 0.93197 0.93448 0.91445 0.91910 0.91080 0.74938 0.87634 0.88459 0.85863 0.90544 0.87115 0.88599 0.90793 0.89299 0.90890 0.90725 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.17 101.05 0.93 1.12 16 2 O -0.35 -4.12 9.94 -35.23 -0.35 -4.47 16 3 C 0.09 1.08 1.04 -89.81 -0.09 0.99 16 4 C 0.18 2.42 2.40 -67.93 -0.16 2.25 16 5 H 0.10 1.35 7.11 -51.93 -0.37 0.98 16 6 C -0.17 -2.06 9.28 37.16 0.34 -1.71 16 7 N -1.11 -16.40 5.26 -4.89 -0.03 -16.43 16 8 S 2.69 50.52 5.65 -107.50 -0.61 49.91 16 9 O -0.97 -20.90 17.27 -57.17 -0.99 -21.88 16 10 O -0.97 -19.73 16.49 -57.17 -0.94 -20.67 16 11 C -0.63 -13.38 5.82 -39.66 -0.23 -13.61 16 12 C -0.15 -3.16 8.94 -39.29 -0.35 -3.51 16 13 C -0.12 -2.58 10.02 -39.66 -0.40 -2.98 16 14 C -0.12 -2.86 8.70 -38.87 -0.34 -3.20 16 15 C 0.09 2.33 5.57 -106.82 -0.60 1.74 16 16 C -0.46 -11.58 9.05 -37.74 -0.34 -11.92 16 17 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 18 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 19 N -0.79 -19.54 10.97 55.55 0.61 -18.93 16 20 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 C -0.12 -2.87 9.26 -38.88 -0.36 -3.23 16 25 C -0.16 -1.63 6.88 -25.83 -0.18 -1.80 16 26 C -0.16 -1.64 7.30 -25.82 -0.19 -1.83 16 27 C -0.16 -2.01 6.68 -25.91 -0.17 -2.19 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.43 5.85 -51.93 -0.30 0.13 16 30 H 0.05 0.37 5.86 -51.93 -0.30 0.06 16 31 H 0.07 0.81 7.64 -51.93 -0.40 0.41 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.96 7.61 -51.93 -0.40 0.56 16 34 H 0.42 5.54 8.84 -34.47 -0.30 5.23 16 35 H 0.11 1.97 7.59 -52.49 -0.40 1.58 16 36 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.12 3.04 6.18 -52.49 -0.32 2.72 16 38 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 39 H 0.11 2.53 7.60 -52.49 -0.40 2.13 16 40 H 0.10 0.95 7.99 -51.93 -0.41 0.54 16 41 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 42 H 0.09 0.77 4.83 -51.93 -0.25 0.52 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.93 7.48 -51.93 -0.39 0.54 16 45 H 0.10 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -29.83 370.56 -10.28 -40.11 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -6.30 Total: 12.19 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: -2.23 Total: -38.18 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.58 Total: -35.36 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -2.28 Total: -47.03 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: 50.52 SS G_CDS: -0.61 Total: 49.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.83 -10.28 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591332469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.194 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds