Wall clock time and date at job start Tue Mar 31 2020 23:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00420 * 2 1 4 4 C 1.52998 * 112.85403 * 179.97438 * 3 2 1 5 5 H 1.08989 * 109.47230 * 170.32824 * 4 3 2 6 6 C 1.53005 * 109.46745 * 50.33443 * 4 3 2 7 7 N 1.46500 * 109.47248 * 290.33626 * 4 3 2 8 8 S 1.65597 * 119.99829 * 214.72254 * 7 4 3 9 9 O 1.42101 * 106.40440 * 178.81358 * 8 7 4 10 10 O 1.42098 * 106.40441 * 311.73424 * 8 7 4 11 11 C 1.76201 * 107.21969 * 65.27423 * 8 7 4 12 12 C 1.38659 * 119.87455 * 269.72731 * 11 8 7 13 13 C 1.38612 * 120.49801 * 179.71569 * 12 11 8 14 14 C 1.37635 * 120.25038 * 0.55942 * 13 12 11 15 15 C 1.40701 * 119.74300 * 359.71931 * 14 13 12 16 16 C 1.41398 * 120.24200 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99743 * 155.24564 * 16 15 14 18 18 C 1.39944 * 120.00244 * 335.25459 * 16 15 14 19 19 N 1.30827 * 119.99622 * 342.24483 * 18 16 15 20 20 Si 1.86801 * 119.99976 * 162.24563 * 18 16 15 21 21 H 1.48500 * 109.46960 * 89.99784 * 20 18 16 22 22 H 1.48500 * 109.46869 * 209.99751 * 20 18 16 23 23 H 1.48497 * 109.46971 * 329.99901 * 20 18 16 24 24 C 1.37591 * 119.87563 * 89.99588 * 11 8 7 25 25 C 1.53777 * 113.61288 * 311.19387 * 3 2 1 26 26 C 1.53957 * 87.02285 * 89.22675 * 25 3 2 27 27 C 1.53785 * 87.10953 * 25.36280 * 26 25 3 28 28 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47191 * 300.00420 * 1 2 3 30 30 H 1.09003 * 109.46689 * 60.00387 * 1 2 3 31 31 H 1.09004 * 109.47184 * 299.99886 * 6 4 3 32 32 H 1.09001 * 109.47288 * 59.99708 * 6 4 3 33 33 H 1.09002 * 109.46914 * 180.02562 * 6 4 3 34 34 H 0.96998 * 119.99971 * 34.99617 * 7 4 3 35 35 H 1.07998 * 119.74713 * 0.02562 * 12 11 8 36 36 H 1.08000 * 119.87472 * 180.25404 * 13 12 11 37 37 H 1.08002 * 120.13173 * 179.74254 * 14 13 12 38 38 H 0.97001 * 119.99255 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.12668 * 359.97438 * 24 11 8 40 40 H 1.08995 * 113.61619 * 203.74899 * 25 3 2 41 41 H 1.09000 * 113.61353 * 334.64901 * 25 3 2 42 42 H 1.09006 * 113.53444 * 270.81681 * 26 25 3 43 43 H 1.08990 * 113.74643 * 139.94124 * 26 25 3 44 44 H 1.09001 * 113.61361 * 220.09532 * 27 26 25 45 45 H 1.08997 * 113.69145 * 89.19641 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5400 1.2747 0.0006 5 1 3.9237 2.2801 -0.1720 6 6 4.0318 0.3437 -1.1095 7 7 4.0181 0.7852 1.2960 8 16 5.4176 1.3886 1.9439 9 8 5.5906 0.7426 3.1976 10 8 6.3894 1.3481 0.9080 11 6 5.1371 3.0921 2.2965 12 6 5.4168 4.0515 1.3353 13 6 5.1955 5.3946 1.5968 14 6 4.7056 5.7913 2.8203 15 6 4.4236 4.8269 3.8053 16 6 3.9194 5.2226 5.0656 17 1 3.3406 4.5290 5.6576 18 6 4.1702 6.5129 5.5459 19 7 5.1329 7.2292 5.0247 20 14 3.1303 7.2124 6.9312 21 1 3.7524 6.8740 8.2365 22 1 3.0467 8.6884 6.7905 23 1 1.7654 6.6309 6.8677 24 6 4.6466 3.4656 3.5265 25 6 1.4132 2.2456 -1.0603 26 6 0.3747 2.6522 0.0011 27 6 1.4130 2.2457 1.0602 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.6481 -0.6619 -0.9369 32 1 3.6760 0.7078 -2.0733 33 1 5.1216 0.3214 -1.1088 34 1 3.5170 0.1049 1.7724 35 1 5.8052 3.7495 0.3739 36 1 5.4130 6.1331 0.8394 37 1 4.5378 6.8387 3.0234 38 1 5.3070 8.1234 5.3579 39 1 4.4331 2.7170 4.2751 40 1 2.0811 3.0565 -1.3507 41 1 0.9836 1.7231 -1.9150 42 1 -0.5168 2.0250 0.0005 43 1 0.1430 3.7172 0.0031 44 1 0.9833 1.7232 1.9149 45 1 2.0815 3.0558 1.3517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591332469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:29 Heat of formation + Delta-G solvation = -94.683209 kcal Electronic energy + Delta-G solvation = -28764.954585 eV Core-core repulsion = 24874.399147 eV Total energy + Delta-G solvation = -3890.555438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57432 -39.44527 -38.28779 -36.91377 -36.72196 -35.66590 -35.64976 -31.91158 -31.58748 -31.01875 -28.33129 -27.34740 -26.61943 -25.40593 -23.66646 -22.84921 -22.43887 -21.04027 -20.49695 -19.57270 -18.59903 -17.83277 -17.70750 -17.06853 -16.87715 -16.53399 -16.40850 -16.00023 -15.77212 -15.22138 -15.07735 -14.62861 -14.49199 -14.34254 -14.31197 -13.78232 -13.69031 -13.29795 -13.22741 -13.12330 -13.08743 -13.05811 -13.02415 -12.87677 -12.83314 -12.66652 -12.58137 -12.32037 -12.20528 -11.67350 -11.62379 -11.50811 -11.30199 -11.13634 -11.02636 -10.34426 -10.30033 -9.83690 -9.54721 -8.73263 -6.44813 -0.49467 0.41361 0.85231 1.36760 1.43843 1.51512 2.10961 2.17777 2.54980 2.67686 2.85159 3.45321 3.51200 3.53507 3.58068 3.67246 3.91566 4.12323 4.30418 4.39418 4.44690 4.47971 4.53927 4.57466 4.62166 4.82159 4.83762 4.85403 4.86738 4.91505 5.01069 5.04347 5.06196 5.08036 5.11656 5.20154 5.25163 5.37730 5.41729 5.47647 5.57498 5.89448 5.94155 6.10041 6.12490 6.33330 6.53104 6.80263 6.85308 8.24883 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004180 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.870001 B = 6697.166284 C = 7758.012522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.367 6.367 3 C 0.096 3.904 4 C 0.170 3.830 5 H 0.097 0.903 6 C -0.164 4.164 7 N -1.097 6.097 8 S 2.713 3.287 9 O -1.000 7.000 10 O -0.983 6.983 11 C -0.634 4.634 12 C -0.146 4.146 13 C -0.120 4.120 14 C -0.138 4.138 15 C 0.066 3.934 16 C -0.498 4.498 17 H 0.078 0.922 18 C 0.038 3.962 19 N -0.824 5.824 20 Si 0.981 3.019 21 H -0.265 1.265 22 H -0.263 1.263 23 H -0.257 1.257 24 C -0.142 4.142 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.173 4.173 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.425 0.575 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.291 0.709 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 -7.477 -11.774 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.286 6.286 3 C 0.054 3.946 4 C 0.064 3.936 5 H 0.115 0.885 6 C -0.223 4.223 7 N -0.858 5.858 8 S 2.806 3.194 9 O -0.991 6.991 10 O -0.972 6.972 11 C -0.724 4.724 12 C -0.167 4.167 13 C -0.139 4.139 14 C -0.158 4.158 15 C 0.063 3.937 16 C -0.527 4.527 17 H 0.096 0.904 18 C -0.178 4.178 19 N -0.450 5.450 20 Si 0.802 3.198 21 H -0.190 1.190 22 H -0.188 1.188 23 H -0.181 1.181 24 C -0.163 4.163 25 C -0.191 4.191 26 C -0.190 4.190 27 C -0.211 4.211 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.261 0.739 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.739 -7.780 -11.705 17.099 hybrid contribution -0.796 1.167 1.359 1.960 sum -10.536 -6.613 -10.346 16.179 Atomic orbital electron populations 1.23252 0.80212 1.03570 1.01123 1.87870 1.20964 1.25212 1.94528 1.22716 0.91466 0.83571 0.96816 1.20890 0.91683 0.98710 0.82354 0.88504 1.22208 1.01516 1.00533 0.97999 1.55258 1.45326 1.54432 1.30777 1.00965 0.73073 0.73379 0.71997 1.93497 1.85593 1.75394 1.44597 1.93497 1.58398 1.87197 1.58152 1.30165 1.16365 1.23201 1.02640 1.20461 1.05145 0.92706 0.98370 1.21123 0.99968 0.95905 0.96874 1.21619 1.01913 0.99623 0.92609 1.17993 0.90527 0.91519 0.93686 1.19845 1.31246 0.98916 1.02712 0.90376 1.26734 0.94496 0.96320 1.00218 1.69824 1.24102 1.11299 1.39736 0.85209 0.79245 0.77981 0.77378 1.18958 1.18764 1.18096 1.20770 1.03770 0.96604 0.95175 1.23561 0.98790 0.99311 0.97474 1.23353 0.97767 1.02661 0.95252 1.23551 0.99590 0.99849 0.98086 0.88521 0.93299 0.91931 0.91150 0.89628 0.92365 0.73884 0.84953 0.85487 0.87018 0.89774 0.87685 0.88442 0.88888 0.87386 0.91050 0.91312 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.17 113.37 1.04 1.25 16 2 O -0.37 -7.66 9.94 -148.98 -1.48 -9.14 16 3 C 0.10 2.09 1.04 -10.27 -0.01 2.08 16 4 C 0.17 4.26 2.40 44.99 0.11 4.37 16 5 H 0.10 2.47 7.11 -2.39 -0.02 2.45 16 6 C -0.16 -3.64 9.28 71.98 0.67 -2.98 16 7 N -1.10 -31.59 5.26 -169.39 -0.89 -32.48 16 8 S 2.71 101.32 5.65 -56.49 -0.32 101.00 16 9 O -1.00 -43.36 17.27 -128.00 -2.21 -45.57 16 10 O -0.98 -38.71 16.49 -128.00 -2.11 -40.82 16 11 C -0.63 -27.12 5.82 22.22 0.13 -26.99 16 12 C -0.15 -5.96 8.94 22.46 0.20 -5.76 16 13 C -0.12 -5.12 10.02 22.22 0.22 -4.89 16 14 C -0.14 -6.82 8.70 22.73 0.20 -6.63 16 15 C 0.07 3.45 5.57 -21.29 -0.12 3.33 16 16 C -0.50 -26.16 9.05 23.46 0.21 -25.95 16 17 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 18 C 0.04 1.84 5.14 85.26 0.44 2.28 16 19 N -0.82 -41.58 10.97 21.83 0.24 -41.34 16 20 Si 0.98 36.96 29.59 68.60 2.03 38.99 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 23 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 24 C -0.14 -6.92 9.26 22.73 0.21 -6.71 16 25 C -0.15 -2.70 6.88 31.18 0.21 -2.49 16 26 C -0.15 -2.83 7.30 31.18 0.23 -2.61 16 27 C -0.17 -4.24 6.68 31.12 0.21 -4.03 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 0.74 5.85 -2.39 -0.01 0.73 16 30 H 0.06 0.75 5.86 -2.39 -0.01 0.73 16 31 H 0.07 1.53 7.64 -2.38 -0.02 1.51 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.45 7.61 -2.39 -0.02 1.43 16 34 H 0.42 11.03 8.84 -96.75 -0.85 10.17 16 35 H 0.13 4.66 7.59 -2.91 -0.02 4.64 16 36 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.11 5.71 6.18 -2.91 -0.02 5.69 16 38 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 39 H 0.11 5.07 7.60 -2.91 -0.02 5.05 16 40 H 0.10 1.70 7.99 -2.39 -0.02 1.68 16 41 H 0.09 1.32 7.48 -2.39 -0.02 1.30 16 42 H 0.11 1.58 4.83 -2.38 -0.01 1.57 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 1.71 7.48 -2.39 -0.02 1.70 16 45 H 0.08 2.29 8.10 -2.39 -0.02 2.27 16 Total: -1.00 -65.05 370.56 -0.63 -65.68 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: 0.16 Total: 39.39 kcal Atomic # 6 Polarization: -79.66 SS G_CDS: 3.95 Total: -75.71 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -0.65 Total: -73.82 kcal Atomic # 8 Polarization: -89.73 SS G_CDS: -5.80 Total: -95.53 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: 101.32 SS G_CDS: -0.32 Total: 101.00 kcal Total: -65.05 -0.63 -65.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591332469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.000 kcal (2) G-P(sol) polarization free energy of solvation -65.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds