Wall clock time and date at job start Tue Mar 31 2020 23:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.69930 * 2 1 4 4 C 1.53188 * 109.58643 * 120.35630 * 2 1 3 5 5 H 1.09003 * 109.49565 * 185.14122 * 4 2 1 6 6 C 1.53002 * 109.50051 * 305.20127 * 4 2 1 7 7 O 1.42901 * 109.47350 * 185.00201 * 6 4 2 8 8 C 1.53038 * 109.31606 * 65.15624 * 4 2 1 9 9 C 1.53049 * 109.53750 * 61.36104 * 8 4 2 10 10 C 1.53625 * 109.24121 * 298.51547 * 9 8 4 11 11 N 1.46923 * 108.54384 * 54.85576 * 10 9 8 12 12 S 1.65600 * 120.63239 * 126.36553 * 11 10 9 13 13 O 1.42108 * 106.39976 * 23.26456 * 12 11 10 14 14 O 1.42106 * 106.40671 * 156.17838 * 12 11 10 15 15 C 1.76198 * 107.22101 * 269.72047 * 12 11 10 16 16 C 1.38656 * 119.87346 * 89.99780 * 15 12 11 17 17 C 1.38615 * 120.50021 * 179.97438 * 16 15 12 18 18 C 1.37637 * 120.24724 * 0.02562 * 17 16 15 19 19 C 1.40694 * 119.74422 * 359.97438 * 18 17 16 20 20 C 1.41395 * 120.24397 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00117 * 155.19063 * 20 19 18 22 22 C 1.39945 * 119.99957 * 335.19435 * 20 19 18 23 23 N 1.30819 * 120.00350 * 342.33283 * 22 20 19 24 24 Si 1.86805 * 119.99971 * 162.32928 * 22 20 19 25 25 H 1.48505 * 109.47167 * 90.00213 * 24 22 20 26 26 H 1.48505 * 109.47143 * 209.99849 * 24 22 20 27 27 H 1.48495 * 109.47325 * 330.00272 * 24 22 20 28 28 C 1.37595 * 119.87654 * 269.72376 * 15 12 11 29 29 H 1.09002 * 109.46597 * 180.35407 * 1 2 3 30 30 H 1.08996 * 109.47428 * 300.35389 * 1 2 3 31 31 H 1.09006 * 109.47171 * 60.35556 * 1 2 3 32 32 H 1.09003 * 109.47050 * 305.00691 * 6 4 2 33 33 H 1.09004 * 109.46730 * 64.99762 * 6 4 2 34 34 H 0.96699 * 113.99709 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.46230 * 181.38091 * 8 4 2 36 36 H 1.09002 * 109.45350 * 301.36030 * 8 4 2 37 37 H 1.09000 * 109.49685 * 58.58848 * 9 8 4 38 38 H 1.08995 * 109.49447 * 178.65463 * 9 8 4 39 39 H 1.08992 * 109.73870 * 295.11798 * 10 9 8 40 40 H 1.09006 * 109.66389 * 174.54766 * 10 9 8 41 41 H 1.08004 * 119.75410 * 359.95830 * 16 15 12 42 42 H 1.08001 * 119.87631 * 180.02562 * 17 16 15 43 43 H 1.08000 * 120.12706 * 179.97438 * 18 17 16 44 44 H 0.97003 * 120.00627 * 180.02562 * 23 22 20 45 45 H 1.07994 * 120.12591 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 3.1297 -0.6498 1.2916 6 6 1.4314 -0.0965 2.4967 7 8 1.9987 -0.6992 3.6616 8 6 1.6415 -2.2041 1.1701 9 6 2.2802 -2.8464 -0.0636 10 6 1.7644 -2.1398 -1.3265 11 7 2.0226 -0.6995 -1.1945 12 16 2.8471 0.1214 -2.3729 13 8 2.6960 -0.6328 -3.5678 14 8 2.4591 1.4837 -2.2595 15 6 4.5576 0.0548 -1.9554 16 6 5.3421 -0.9893 -2.4211 17 6 6.6892 -1.0542 -2.1011 18 6 7.2629 -0.0806 -1.3154 19 6 6.4765 0.9836 -0.8372 20 6 7.0548 1.9892 -0.0288 21 1 6.6106 2.9729 0.0098 22 6 8.2028 1.7100 0.7212 23 7 8.5443 0.4694 0.9572 24 14 9.2478 3.1088 1.3853 25 1 8.7613 3.4926 2.7349 26 1 10.6634 2.6693 1.4760 27 1 9.1495 4.2764 0.4732 28 6 5.1112 1.0422 -1.1732 29 1 -0.3632 -1.0277 0.0064 30 1 -0.3634 0.5193 0.8867 31 1 -0.3634 0.5083 -0.8932 32 1 1.6410 0.9732 2.5024 33 1 0.3531 -0.2554 2.4938 34 1 1.6557 -0.3460 4.4938 35 1 1.9845 -2.7202 2.0667 36 1 0.5566 -2.2815 1.0990 37 1 3.3641 -2.7473 -0.0054 38 1 2.0129 -3.9023 -0.1035 39 1 0.6932 -2.3108 -1.4324 40 1 2.2865 -2.5259 -2.2020 41 1 4.9002 -1.7581 -3.0377 42 1 7.2910 -1.8719 -2.4696 43 1 8.3126 -0.1333 -1.0669 44 1 9.3399 0.2758 1.4774 45 1 4.4994 1.8572 -0.8155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591332969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:20 Heat of formation + Delta-G solvation = -117.084516 kcal Electronic energy + Delta-G solvation = -28962.717219 eV Core-core repulsion = 25071.190388 eV Total energy + Delta-G solvation = -3891.526831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.38115 -37.62027 -36.75030 -36.49378 -35.30425 -33.83440 -32.58314 -32.32657 -30.06512 -29.77953 -27.93563 -25.78575 -25.46584 -23.26734 -22.09530 -21.78385 -20.96679 -19.42181 -18.35607 -17.88699 -17.47308 -17.13014 -15.94103 -15.56540 -15.25022 -15.14366 -14.72526 -14.62558 -14.35608 -14.26022 -13.55567 -13.40540 -13.31645 -13.19561 -12.93689 -12.57506 -12.42396 -12.13199 -11.90846 -11.73891 -11.61548 -11.50796 -11.40122 -11.34790 -11.26319 -11.04308 -10.99359 -10.90137 -10.71521 -10.60029 -10.33837 -10.26651 -9.84573 -9.75921 -9.56537 -9.33759 -8.74924 -8.01050 -7.68816 -6.91730 -4.52462 0.97837 2.21088 2.64551 3.00231 3.02169 3.09043 3.43220 3.83380 4.18895 4.29270 4.42034 4.65579 4.77448 4.96445 5.03094 5.15589 5.21791 5.27093 5.31792 5.41811 5.42616 5.48719 5.60428 5.67791 5.78282 5.82359 5.95279 6.00969 6.06160 6.07699 6.18241 6.27819 6.34293 6.46685 6.56489 6.65129 6.72525 6.78265 6.95236 7.05697 7.23265 7.39496 7.63014 7.73931 7.81619 7.95335 8.41074 8.68034 8.72940 10.03805 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.004753 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.780970 B = 5889.611344 C = 7105.396473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 H 0.100 0.900 4 C -0.100 4.100 5 H 0.091 0.909 6 C 0.081 3.919 7 O -0.570 6.570 8 C -0.104 4.104 9 C -0.137 4.137 10 C 0.123 3.877 11 N -0.993 5.993 12 S 2.685 3.315 13 O -0.973 6.973 14 O -0.970 6.970 15 C -0.631 4.631 16 C -0.147 4.147 17 C -0.120 4.120 18 C -0.118 4.118 19 C 0.093 3.907 20 C -0.460 4.460 21 H 0.082 0.918 22 C 0.076 3.924 23 N -0.793 5.793 24 Si 0.910 3.090 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.259 1.259 28 C -0.125 4.125 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.376 0.624 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.283 0.717 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -4.222 3.717 13.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 H 0.118 0.882 4 C -0.120 4.120 5 H 0.110 0.890 6 C 0.003 3.997 7 O -0.374 6.374 8 C -0.142 4.142 9 C -0.176 4.176 10 C -0.002 4.002 11 N -0.829 5.829 12 S 2.783 3.217 13 O -0.964 6.964 14 O -0.961 6.961 15 C -0.723 4.723 16 C -0.168 4.168 17 C -0.140 4.140 18 C -0.138 4.138 19 C 0.090 3.910 20 C -0.490 4.490 21 H 0.100 0.900 22 C -0.142 4.142 23 N -0.418 5.418 24 Si 0.734 3.266 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.183 1.183 28 C -0.146 4.146 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.222 0.778 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.094 0.906 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.047 -4.299 2.627 13.058 hybrid contribution 0.984 0.642 1.272 1.732 sum -11.063 -3.657 3.900 12.287 Atomic orbital electron populations 1.22233 0.95167 1.02530 1.02367 1.20786 0.94298 0.96068 0.83752 0.88205 1.21505 1.02537 0.95882 0.92046 0.89023 1.22251 0.95976 0.96074 0.85398 1.86514 1.69080 1.65865 1.15970 1.21444 0.99928 0.94691 0.98121 1.22014 1.01953 0.98971 0.94636 1.21456 1.00926 0.79088 0.98729 1.57853 1.70883 1.18115 1.36045 1.01832 0.74456 0.72719 0.72698 1.93500 1.86965 1.72481 1.43438 1.93512 1.82939 1.33353 1.86273 1.29802 1.22061 1.05668 1.14728 1.20046 0.94872 0.97867 1.04044 1.20799 0.94605 0.98840 0.99726 1.21617 1.00070 0.95450 0.96647 1.17666 0.90232 0.92578 0.90569 1.19591 1.08508 0.98514 1.22359 0.89992 1.25920 0.97141 0.96517 0.94651 1.69778 1.22839 1.19835 1.29394 0.86281 0.78897 0.81689 0.79770 1.19337 1.19993 1.18303 1.20731 0.95708 0.97482 1.00688 0.91754 0.91489 0.92020 0.93356 0.93439 0.77815 0.91233 0.92130 0.90724 0.91140 0.91417 0.89225 0.87764 0.88447 0.85832 0.90595 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.51 37.16 0.32 -1.46 16 2 C 0.16 2.17 2.74 -67.60 -0.19 1.98 16 3 H 0.10 1.49 7.13 -51.93 -0.37 1.12 16 4 C -0.10 -1.34 2.35 -90.50 -0.21 -1.56 16 5 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 6 C 0.08 0.92 5.76 37.16 0.21 1.13 16 7 O -0.57 -6.85 13.18 -35.23 -0.46 -7.31 16 8 C -0.10 -1.25 4.87 -26.69 -0.13 -1.38 16 9 C -0.14 -1.69 6.10 -26.38 -0.16 -1.85 16 10 C 0.12 1.61 5.99 -3.49 -0.02 1.59 16 11 N -0.99 -15.28 2.99 -106.23 -0.32 -15.60 16 12 S 2.68 51.73 5.69 -107.50 -0.61 51.12 16 13 O -0.97 -20.03 15.97 -57.17 -0.91 -20.95 16 14 O -0.97 -20.44 15.97 -57.17 -0.91 -21.36 16 15 C -0.63 -13.94 5.97 -39.66 -0.24 -14.18 16 16 C -0.15 -3.23 9.53 -39.29 -0.37 -3.60 16 17 C -0.12 -2.73 10.02 -39.66 -0.40 -3.12 16 18 C -0.12 -2.96 8.69 -38.87 -0.34 -3.30 16 19 C 0.09 2.41 5.57 -106.83 -0.60 1.82 16 20 C -0.46 -11.83 9.05 -37.74 -0.34 -12.17 16 21 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 22 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 23 N -0.79 -19.71 10.97 55.55 0.61 -19.10 16 24 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 28 C -0.12 -3.00 9.26 -38.88 -0.36 -3.36 16 29 H 0.06 0.62 5.71 -51.93 -0.30 0.33 16 30 H 0.07 0.59 6.52 -51.93 -0.34 0.25 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.43 6.68 -51.93 -0.35 0.08 16 34 H 0.38 2.69 9.12 45.56 0.42 3.11 16 35 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 36 H 0.06 0.62 6.49 -51.93 -0.34 0.29 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 40 H 0.09 1.20 7.12 -51.93 -0.37 0.83 16 41 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 42 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.12 3.15 6.18 -52.49 -0.32 2.82 16 44 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 45 H 0.11 2.52 7.60 -52.49 -0.40 2.12 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -31.13 365.64 -10.69 -41.82 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.64 Total: 10.51 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: -2.91 Total: -37.72 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.29 Total: -34.69 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -2.29 Total: -49.62 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 51.73 SS G_CDS: -0.61 Total: 51.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.13 -10.69 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591332969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.269 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds