Wall clock time and date at job start Tue Mar 31 2020 23:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58745 * 2 1 4 4 C 1.53184 * 109.70565 * 239.64566 * 2 1 3 5 5 H 1.08999 * 109.50150 * 174.82621 * 4 2 1 6 6 C 1.53005 * 109.49715 * 54.72834 * 4 2 1 7 7 O 1.42905 * 109.46995 * 174.99983 * 6 4 2 8 8 C 1.53039 * 109.31385 * 294.77737 * 4 2 1 9 9 C 1.53038 * 109.53702 * 298.63616 * 8 4 2 10 10 C 1.52758 * 109.38579 * 61.23754 * 9 8 4 11 11 N 1.46924 * 109.58886 * 120.28168 * 2 1 3 12 12 S 1.65601 * 120.63413 * 246.30089 * 11 2 1 13 13 O 1.42097 * 106.40097 * 336.45726 * 12 11 2 14 14 O 1.42096 * 106.40229 * 203.53772 * 12 11 2 15 15 C 1.76203 * 107.21641 * 89.99990 * 12 11 2 16 16 C 1.38655 * 119.87324 * 270.01834 * 15 12 11 17 17 C 1.38615 * 120.50069 * 179.97438 * 16 15 12 18 18 C 1.37641 * 120.24740 * 359.76701 * 17 16 15 19 19 C 1.40694 * 119.74228 * 0.48470 * 18 17 16 20 20 C 1.41399 * 120.24061 * 179.76215 * 19 18 17 21 21 H 1.08000 * 119.99879 * 27.55063 * 20 19 18 22 22 C 1.39947 * 119.99932 * 207.54041 * 20 19 18 23 23 N 1.30826 * 120.00126 * 195.90016 * 22 20 19 24 24 Si 1.86797 * 119.99875 * 16.18527 * 22 20 19 25 25 H 1.48505 * 109.47330 * 265.21577 * 24 22 20 26 26 H 1.48500 * 109.47224 * 25.21328 * 24 22 20 27 27 H 1.48501 * 109.47437 * 145.21872 * 24 22 20 28 28 C 1.37592 * 119.87820 * 90.00151 * 15 12 11 29 29 H 1.09005 * 109.47286 * 299.71650 * 1 2 3 30 30 H 1.09006 * 109.47256 * 59.71335 * 1 2 3 31 31 H 1.08995 * 109.47297 * 179.71436 * 1 2 3 32 32 H 1.08998 * 109.46742 * 294.99808 * 6 4 2 33 33 H 1.08995 * 109.46834 * 55.00532 * 6 4 2 34 34 H 0.96696 * 113.99935 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46182 * 58.65403 * 8 4 2 36 36 H 1.09002 * 109.46288 * 178.61186 * 8 4 2 37 37 H 1.09007 * 109.49644 * 181.31629 * 9 8 4 38 38 H 1.09001 * 109.50038 * 301.40920 * 9 8 4 39 39 H 1.08998 * 109.51244 * 185.70802 * 10 9 8 40 40 H 1.09000 * 109.43269 * 65.42101 * 10 9 8 41 41 H 1.08000 * 119.74886 * 0.02562 * 16 15 12 42 42 H 1.08003 * 119.87516 * 180.02562 * 17 16 15 43 43 H 1.08001 * 120.12456 * 180.28054 * 18 17 16 44 44 H 0.96993 * 120.00071 * 180.02562 * 23 22 20 45 45 H 1.08002 * 120.12712 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2444 5 1 3.1325 -0.6476 -1.2891 6 6 1.4346 -0.0975 -2.4967 7 8 2.0045 -0.6996 -3.6607 8 6 1.6473 -2.2043 -1.1691 9 6 2.2857 -2.8447 0.0655 10 6 1.7768 -2.1410 1.3222 11 7 2.0226 -0.6980 1.1953 12 16 2.8450 0.1247 2.3739 13 8 3.3946 1.2769 1.7499 14 8 3.6333 -0.8383 3.0598 15 6 1.6521 0.7074 3.5324 16 6 1.0694 1.9532 3.3562 17 6 0.1292 2.4242 4.2593 18 6 -0.2398 1.6559 5.3401 19 6 0.3488 0.3925 5.5318 20 6 -0.0187 -0.4034 6.6412 21 1 -1.0007 -0.2996 7.0786 22 6 0.8899 -1.3258 7.1724 23 7 0.4704 -2.2684 7.9767 24 14 2.7031 -1.2060 6.7393 25 1 2.9987 -2.1036 5.5937 26 1 3.0322 0.1939 6.3690 27 1 3.5198 -1.6134 7.9107 28 6 1.3021 -0.0756 4.6083 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5183 -0.8874 31 1 -0.3633 -1.0276 -0.0051 32 1 0.3566 -0.2587 -2.4951 33 1 1.6421 0.9725 -2.5026 34 1 1.6618 -0.3475 -4.4935 35 1 0.5624 -2.2839 -1.0995 36 1 1.9923 -2.7201 -2.0652 37 1 2.0201 -3.9012 0.1058 38 1 3.3695 -2.7436 0.0086 39 1 2.3050 -2.5263 2.1944 40 1 0.7074 -2.3213 1.4310 41 1 1.3497 2.5608 2.5085 42 1 -0.3186 3.3959 4.1120 43 1 -0.9759 2.0229 6.0400 44 1 1.1002 -2.9074 8.3451 45 1 1.7573 -1.0456 4.7438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591332971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:27 Heat of formation + Delta-G solvation = -135.771893 kcal Electronic energy + Delta-G solvation = -29006.203493 eV Core-core repulsion = 25113.866316 eV Total energy + Delta-G solvation = -3892.337177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47667 -39.71841 -38.48963 -37.42947 -37.04709 -35.66569 -33.69698 -33.46650 -32.54418 -31.94952 -28.91671 -27.24394 -26.77819 -24.43686 -23.89603 -23.07513 -23.00833 -20.73633 -19.84433 -19.26524 -18.78928 -18.52824 -18.25727 -16.99065 -16.95925 -16.59788 -16.18928 -15.97536 -15.61678 -15.41501 -15.35666 -15.07520 -14.63321 -14.58673 -14.32563 -14.14513 -13.96746 -13.71533 -13.42494 -13.33525 -13.24771 -13.16018 -13.05295 -12.81369 -12.74481 -12.66146 -12.38250 -12.21789 -12.09081 -11.82545 -11.74073 -11.47188 -11.33052 -11.29336 -11.11566 -10.70547 -10.15659 -9.93488 -9.66471 -9.02250 -6.62204 -0.69572 0.13763 0.65675 1.21866 1.26407 1.33059 1.88866 1.98007 2.40488 2.60815 3.14496 3.29339 3.41883 3.55375 3.83694 3.99366 4.09734 4.12513 4.21440 4.24701 4.29351 4.42424 4.47905 4.50181 4.51339 4.59178 4.68116 4.76975 4.81605 4.83457 4.88832 4.96743 5.05089 5.09216 5.12500 5.24222 5.31242 5.32326 5.36245 5.38382 5.57519 5.63003 5.64928 5.69562 6.07154 6.18824 6.54054 6.69809 7.00162 8.05394 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.004299 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.223095 B = 6511.457473 C = 7001.386740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.146 3.854 3 H 0.098 0.902 4 C -0.095 4.095 5 H 0.061 0.939 6 C 0.084 3.916 7 O -0.591 6.591 8 C -0.103 4.103 9 C -0.128 4.128 10 C 0.107 3.893 11 N -0.985 5.985 12 S 2.691 3.309 13 O -0.978 6.978 14 O -0.995 6.995 15 C -0.632 4.632 16 C -0.135 4.135 17 C -0.095 4.095 18 C -0.165 4.165 19 C 0.055 3.945 20 C -0.474 4.474 21 H 0.074 0.926 22 C 0.065 3.935 23 N -0.835 5.835 24 Si 0.917 3.083 25 H -0.252 1.252 26 H -0.260 1.260 27 H -0.268 1.268 28 C -0.161 4.161 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.398 0.602 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.140 0.860 42 H 0.150 0.850 43 H 0.122 0.878 44 H 0.296 0.704 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 2.402 -20.781 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.041 3.959 3 H 0.116 0.884 4 C -0.115 4.115 5 H 0.080 0.920 6 C 0.005 3.995 7 O -0.400 6.400 8 C -0.140 4.140 9 C -0.167 4.167 10 C -0.017 4.017 11 N -0.824 5.824 12 S 2.787 3.213 13 O -0.968 6.968 14 O -0.986 6.986 15 C -0.721 4.721 16 C -0.155 4.155 17 C -0.114 4.114 18 C -0.185 4.185 19 C 0.052 3.948 20 C -0.503 4.503 21 H 0.092 0.908 22 C -0.152 4.152 23 N -0.461 5.461 24 Si 0.742 3.258 25 H -0.178 1.178 26 H -0.184 1.184 27 H -0.194 1.194 28 C -0.182 4.182 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.140 0.860 44 H 0.107 0.893 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.027 1.950 -20.066 20.161 hybrid contribution -0.103 0.128 0.700 0.719 sum -0.130 2.078 -19.367 19.478 Atomic orbital electron populations 1.22304 0.93076 1.03776 1.03465 1.21140 0.96000 0.95916 0.82839 0.88447 1.21422 1.00526 0.96756 0.92795 0.92005 1.22216 0.97232 0.95957 0.84045 1.86416 1.69582 1.66760 1.17206 1.21476 1.01405 0.93791 0.97327 1.21817 1.00531 1.00485 0.93889 1.21579 1.02481 0.77861 0.99792 1.57572 1.74752 1.17653 1.32397 1.01546 0.74121 0.72654 0.72980 1.93479 1.76748 1.50596 1.75989 1.93503 1.67808 1.62301 1.74959 1.30330 1.20983 1.06083 1.14693 1.20610 0.99142 0.94070 1.01717 1.21225 0.96665 0.99851 0.93619 1.21595 1.03442 0.93599 0.99856 1.17972 0.91849 0.92673 0.92326 1.19504 1.01770 1.16478 1.12584 0.90793 1.26436 1.03459 0.92237 0.93066 1.69648 1.39008 1.11605 1.25818 0.86234 0.79544 0.81386 0.78666 1.17766 1.18423 1.19434 1.20729 1.02662 0.98971 0.95798 0.92759 0.88578 0.90921 0.90932 0.92535 0.75256 0.90092 0.90790 0.88574 0.92627 0.90812 0.89557 0.84205 0.83226 0.86023 0.89315 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 8.52 71.98 0.61 -2.46 16 2 C 0.15 3.34 2.83 44.97 0.13 3.47 16 3 H 0.10 2.30 6.92 -2.38 -0.02 2.28 16 4 C -0.09 -1.89 2.36 -10.72 -0.03 -1.91 16 5 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 6 C 0.08 1.18 5.76 71.98 0.41 1.60 16 7 O -0.59 -8.83 13.18 -148.98 -1.96 -10.79 16 8 C -0.10 -1.88 4.88 30.62 0.15 -1.73 16 9 C -0.13 -2.73 6.06 30.53 0.19 -2.55 16 10 C 0.11 2.88 6.04 86.22 0.52 3.41 16 11 N -0.98 -29.01 3.00 -491.56 -1.47 -30.49 16 12 S 2.69 103.82 5.73 -56.49 -0.32 103.49 16 13 O -0.98 -38.43 15.86 -128.00 -2.03 -40.46 16 14 O -1.00 -44.75 15.85 -128.00 -2.03 -46.78 16 15 C -0.63 -26.64 5.97 22.22 0.13 -26.51 16 16 C -0.13 -5.02 9.53 22.46 0.21 -4.81 16 17 C -0.09 -3.42 10.02 22.22 0.22 -3.20 16 18 C -0.17 -7.03 9.80 22.73 0.22 -6.81 16 19 C 0.06 2.75 5.18 -21.29 -0.11 2.64 16 20 C -0.47 -25.80 9.60 23.46 0.23 -25.58 16 21 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 22 C 0.06 3.49 5.44 85.26 0.46 3.95 16 23 N -0.83 -45.27 13.93 21.83 0.30 -44.96 16 24 Si 0.92 45.10 24.41 68.60 1.67 46.77 16 25 H -0.25 -12.44 6.69 99.48 0.67 -11.77 16 26 H -0.26 -13.26 6.69 99.48 0.67 -12.59 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 28 C -0.16 -7.78 6.53 22.73 0.15 -7.63 16 29 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.10 1.17 6.53 -2.38 -0.02 1.16 16 31 H 0.07 1.24 5.76 -2.39 -0.01 1.23 16 32 H 0.07 0.74 6.69 -2.39 -0.02 0.72 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.40 2.17 9.12 -74.06 -0.68 1.49 16 35 H 0.08 1.26 6.51 -2.38 -0.02 1.24 16 36 H 0.07 1.34 7.79 -2.39 -0.02 1.32 16 37 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 2.29 6.91 -2.39 -0.02 2.28 16 40 H 0.09 2.04 7.52 -2.39 -0.02 2.03 16 41 H 0.14 4.40 7.60 -2.91 -0.02 4.37 16 42 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 44 H 0.30 14.56 8.30 -92.71 -0.77 13.79 16 45 H 0.10 5.10 3.83 -2.91 -0.01 5.09 16 Total: -1.00 -68.99 359.29 -2.08 -71.07 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.26 Total: 20.26 kcal Atomic # 6 Polarization: -71.61 SS G_CDS: 3.50 Total: -68.11 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -1.17 Total: -75.45 kcal Atomic # 8 Polarization: -92.01 SS G_CDS: -6.02 Total: -98.03 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.67 Total: 46.77 kcal Atomic # 16 Polarization: 103.82 SS G_CDS: -0.32 Total: 103.49 kcal Total: -68.99 -2.08 -71.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591332971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.704 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds