Wall clock time and date at job start Tue Mar 31 2020 23:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.58543 * 2 1 4 4 C 1.53192 * 109.59056 * 239.71562 * 2 1 3 5 5 H 1.09006 * 109.49600 * 305.39194 * 4 2 1 6 6 C 1.52996 * 109.49604 * 65.47941 * 4 2 1 7 7 O 1.42901 * 109.47427 * 185.00265 * 6 4 2 8 8 C 1.53032 * 109.31631 * 185.43557 * 4 2 1 9 9 C 1.53039 * 109.54004 * 61.36557 * 8 4 2 10 10 C 1.53192 * 109.31189 * 298.63606 * 9 8 4 11 11 N 1.46924 * 108.77723 * 54.63564 * 10 9 8 12 12 S 1.65599 * 120.63337 * 126.36937 * 11 10 9 13 13 O 1.42099 * 106.39970 * 212.37158 * 12 11 10 14 14 O 1.42091 * 106.40291 * 345.29509 * 12 11 10 15 15 C 1.76201 * 107.21746 * 98.83513 * 12 11 10 16 16 C 1.38656 * 119.87765 * 97.53915 * 15 12 11 17 17 C 1.38611 * 120.50394 * 179.97438 * 16 15 12 18 18 C 1.37642 * 120.24578 * 0.02562 * 17 16 15 19 19 C 1.40702 * 119.74564 * 359.97438 * 18 17 16 20 20 C 1.41392 * 120.24156 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99994 * 145.59245 * 20 19 18 22 22 C 1.39945 * 120.00273 * 325.57862 * 20 19 18 23 23 N 1.30824 * 119.99972 * 3.70308 * 22 20 19 24 24 Si 1.86798 * 120.00196 * 183.69574 * 22 20 19 25 25 H 1.48495 * 109.47153 * 60.00710 * 24 22 20 26 26 H 1.48500 * 109.46999 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47173 * 300.00355 * 24 22 20 28 28 C 1.37601 * 119.87531 * 277.26329 * 15 12 11 29 29 H 1.08999 * 109.47334 * 172.17126 * 1 2 3 30 30 H 1.09002 * 109.47487 * 292.16801 * 1 2 3 31 31 H 1.08999 * 109.47608 * 52.16774 * 1 2 3 32 32 H 1.09002 * 109.47643 * 305.00884 * 6 4 2 33 33 H 1.09000 * 109.47308 * 65.00441 * 6 4 2 34 34 H 0.96693 * 114.00131 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46347 * 181.38219 * 8 4 2 36 36 H 1.08999 * 109.46351 * 301.34334 * 8 4 2 37 37 H 1.09002 * 109.49619 * 58.58502 * 9 8 4 38 38 H 1.08993 * 109.50309 * 178.65107 * 9 8 4 39 39 H 1.09000 * 109.58646 * 174.41991 * 10 9 8 40 40 H 1.09006 * 109.58781 * 294.70371 * 10 9 8 41 41 H 1.07998 * 119.74927 * 359.95051 * 16 15 12 42 42 H 1.07995 * 119.88230 * 180.02562 * 17 16 15 43 43 H 1.08002 * 120.12664 * 179.97438 * 18 17 16 44 44 H 0.96995 * 120.00240 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.12079 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6049 -1.7246 -1.2921 6 6 1.6509 0.0615 -2.4967 7 8 2.0272 -0.6745 -3.6624 8 6 3.5677 -0.8434 -1.1729 9 6 3.9603 -1.6608 0.0599 10 6 3.4685 -0.9436 1.3211 11 7 2.0253 -0.6991 1.1937 12 16 0.9769 -1.2023 2.3727 13 8 -0.2379 -1.5341 1.7143 14 8 1.6966 -2.1197 3.1847 15 6 0.6266 0.1935 3.3895 16 6 -0.5280 0.9309 3.1763 17 6 -0.8167 2.0309 3.9687 18 6 0.0426 2.4034 4.9774 19 6 1.2173 1.6624 5.2029 20 6 2.1070 2.0354 6.2366 21 1 2.6481 1.2771 6.7830 22 6 2.2868 3.3870 6.5514 23 7 1.5785 4.3010 5.9394 24 14 3.5380 3.8863 7.8454 25 1 4.8891 3.4323 7.4288 26 1 3.5354 5.3640 7.9924 27 1 3.1839 3.2595 9.1442 28 6 1.4971 0.5441 4.3958 29 1 -0.3634 -1.0181 -0.1400 30 1 -0.3634 0.3878 0.9517 31 1 -0.3634 0.6303 -0.8116 32 1 0.5728 0.2227 -2.5011 33 1 2.1620 1.0242 -2.4942 34 1 1.8084 -0.2326 -4.4942 35 1 3.9381 -1.3391 -2.0702 36 1 4.0045 0.1528 -1.1022 37 1 3.5036 -2.6488 0.0018 38 1 5.0447 -1.7630 0.0986 39 1 3.6575 -1.5684 2.1940 40 1 3.9938 0.0053 1.4302 41 1 -1.2075 0.6464 2.3865 42 1 -1.7191 2.5979 3.7941 43 1 -0.1840 3.2610 5.5935 44 1 1.7029 5.2378 6.1578 45 1 2.3939 -0.0341 4.5626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591332972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:32 Heat of formation + Delta-G solvation = -102.827098 kcal Electronic energy + Delta-G solvation = -28679.230377 eV Core-core repulsion = 24788.321794 eV Total energy + Delta-G solvation = -3890.908583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.30670 -37.69207 -36.95300 -36.62877 -35.32323 -33.79758 -32.82113 -32.54882 -30.09003 -29.81579 -27.64040 -25.78840 -25.48559 -23.27290 -21.84540 -21.54452 -21.05397 -20.23696 -18.66019 -17.88742 -17.41802 -16.76821 -16.05549 -15.86395 -15.28912 -15.21846 -14.72349 -14.62504 -14.43756 -14.19111 -13.82329 -13.48237 -13.32983 -13.21452 -12.84385 -12.61767 -12.47354 -12.27758 -12.00708 -11.80916 -11.60372 -11.47308 -11.30330 -11.26607 -11.18463 -10.98708 -10.93342 -10.89546 -10.65265 -10.57408 -10.49231 -10.00840 -9.94073 -9.80178 -9.59947 -9.34857 -8.75982 -8.02852 -7.60655 -6.79466 -4.58812 0.97146 2.17390 2.61219 3.00646 3.02873 3.06968 3.41364 3.85858 4.05339 4.27782 4.46187 4.59914 4.71472 4.87015 4.94971 5.02506 5.14609 5.27134 5.34075 5.34291 5.39307 5.44402 5.63690 5.71197 5.76634 5.85427 5.93799 5.95575 6.03801 6.08465 6.15250 6.25665 6.32527 6.39755 6.59299 6.67411 6.71728 6.78483 6.94768 7.10001 7.20779 7.33348 7.44961 7.70295 7.83637 7.95692 8.41073 8.69219 8.73053 10.12880 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.003580 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.286838 B = 7819.954026 C = 8099.504804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.095 4.095 5 H 0.083 0.917 6 C 0.080 3.920 7 O -0.573 6.573 8 C -0.109 4.109 9 C -0.131 4.131 10 C 0.115 3.885 11 N -0.994 5.994 12 S 2.686 3.314 13 O -0.970 6.970 14 O -0.973 6.973 15 C -0.641 4.641 16 C -0.140 4.140 17 C -0.128 4.128 18 C -0.105 4.105 19 C 0.087 3.913 20 C -0.465 4.465 21 H 0.080 0.920 22 C 0.071 3.929 23 N -0.814 5.814 24 Si 0.918 3.082 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.264 1.264 28 C -0.112 4.112 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.377 0.623 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.281 0.719 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -3.361 -13.609 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.058 3.942 3 H 0.093 0.907 4 C -0.115 4.115 5 H 0.102 0.898 6 C 0.002 3.998 7 O -0.378 6.378 8 C -0.146 4.146 9 C -0.170 4.170 10 C -0.010 4.010 11 N -0.831 5.831 12 S 2.785 3.215 13 O -0.960 6.960 14 O -0.964 6.964 15 C -0.732 4.732 16 C -0.161 4.161 17 C -0.147 4.147 18 C -0.125 4.125 19 C 0.084 3.916 20 C -0.495 4.495 21 H 0.098 0.902 22 C -0.145 4.145 23 N -0.441 5.441 24 Si 0.743 3.257 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.189 1.189 28 C -0.133 4.133 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.117 0.883 43 H 0.153 0.847 44 H 0.092 0.908 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.085 -4.401 -13.044 13.924 hybrid contribution 0.438 1.699 0.377 1.794 sum 2.523 -2.703 -12.667 13.196 Atomic orbital electron populations 1.22966 0.92830 1.05520 1.03934 1.20805 0.94589 0.95351 0.83459 0.90708 1.21527 0.96993 1.00613 0.92398 0.89830 1.22236 0.98642 0.93856 0.85113 1.86465 1.85529 1.49687 1.16102 1.21478 0.94623 1.00468 0.98044 1.21886 1.00924 0.99502 0.94719 1.21474 0.79618 1.00865 0.99089 1.57750 1.17856 1.74399 1.33084 1.01821 0.72664 0.74554 0.72440 1.93572 1.45012 1.83711 1.73742 1.93492 1.73426 1.61106 1.68349 1.29857 1.05819 1.22117 1.15421 1.20251 0.96544 0.97335 1.01956 1.20906 0.99240 0.96982 0.97574 1.21932 0.92383 1.00751 0.97405 1.17723 0.91505 0.90460 0.91945 1.19530 1.22048 0.92470 1.15476 0.90205 1.25879 0.96282 0.96391 0.95907 1.69683 1.35324 1.02340 1.36748 0.86191 0.80929 0.77768 0.80807 1.18934 1.20328 1.18895 1.20868 0.97517 0.99944 0.94967 0.88363 0.90233 0.91759 0.92932 0.93502 0.77664 0.91168 0.91969 0.91552 0.90748 0.88515 0.91215 0.86940 0.88263 0.84722 0.90802 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 7.13 37.15 0.26 -2.47 16 2 C 0.16 2.22 2.97 -67.60 -0.20 2.02 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.10 -1.12 2.04 -90.51 -0.18 -1.31 16 5 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 6 C 0.08 0.77 6.30 37.16 0.23 1.01 16 7 O -0.57 -5.50 13.18 -35.23 -0.46 -5.96 16 8 C -0.11 -1.19 5.08 -26.69 -0.14 -1.33 16 9 C -0.13 -1.49 6.08 -26.61 -0.16 -1.66 16 10 C 0.11 1.57 6.50 -3.71 -0.02 1.55 16 11 N -0.99 -15.44 3.29 -106.47 -0.35 -15.80 16 12 S 2.69 51.01 5.22 -107.50 -0.56 50.45 16 13 O -0.97 -18.85 12.54 -57.17 -0.72 -19.56 16 14 O -0.97 -20.60 15.87 -57.17 -0.91 -21.51 16 15 C -0.64 -13.88 5.88 -39.66 -0.23 -14.11 16 16 C -0.14 -2.98 8.53 -39.29 -0.33 -3.31 16 17 C -0.13 -2.82 10.02 -39.66 -0.40 -3.22 16 18 C -0.10 -2.59 8.67 -38.87 -0.34 -2.93 16 19 C 0.09 2.23 5.55 -106.83 -0.59 1.64 16 20 C -0.46 -11.90 9.05 -37.74 -0.34 -12.24 16 21 H 0.08 1.97 7.85 -52.49 -0.41 1.55 16 22 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 23 N -0.81 -20.12 10.61 55.55 0.59 -19.54 16 24 Si 0.92 18.25 29.56 -169.99 -5.03 13.22 16 25 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 26 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 27 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 28 C -0.11 -2.66 9.26 -38.87 -0.36 -3.02 16 29 H 0.10 1.48 6.41 -51.93 -0.33 1.15 16 30 H 0.08 1.27 3.26 -51.93 -0.17 1.10 16 31 H 0.06 0.72 6.89 -51.93 -0.36 0.36 16 32 H 0.05 0.47 6.56 -51.93 -0.34 0.13 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.38 1.87 9.12 45.56 0.42 2.29 16 35 H 0.07 0.76 7.79 -51.93 -0.40 0.36 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 1.39 6.74 -51.93 -0.35 1.04 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.11 2.14 5.81 -52.49 -0.31 1.83 16 42 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 43 H 0.14 3.41 6.14 -52.49 -0.32 3.09 16 44 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 45 H 0.11 2.47 7.78 -52.49 -0.41 2.06 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -30.22 357.77 -10.45 -40.67 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.50 Total: 10.40 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: -2.90 Total: -37.76 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.24 Total: -35.33 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -2.09 Total: -47.04 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: 51.01 SS G_CDS: -0.56 Total: 50.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.22 -10.45 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591332972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.157 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds