Wall clock time and date at job start Tue Mar 31 2020 23:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.58543 * 2 1 4 4 C 1.53192 * 109.59056 * 239.71562 * 2 1 3 5 5 H 1.09006 * 109.49600 * 305.39194 * 4 2 1 6 6 C 1.52996 * 109.49604 * 65.47941 * 4 2 1 7 7 O 1.42901 * 109.47427 * 185.00265 * 6 4 2 8 8 C 1.53032 * 109.31631 * 185.43557 * 4 2 1 9 9 C 1.53039 * 109.54004 * 61.36557 * 8 4 2 10 10 C 1.53192 * 109.31189 * 298.63606 * 9 8 4 11 11 N 1.46924 * 108.77723 * 54.63564 * 10 9 8 12 12 S 1.65599 * 120.63337 * 126.36937 * 11 10 9 13 13 O 1.42099 * 106.39970 * 212.37158 * 12 11 10 14 14 O 1.42091 * 106.40291 * 345.29509 * 12 11 10 15 15 C 1.76201 * 107.21746 * 98.83513 * 12 11 10 16 16 C 1.38656 * 119.87765 * 97.53915 * 15 12 11 17 17 C 1.38611 * 120.50394 * 179.97438 * 16 15 12 18 18 C 1.37642 * 120.24578 * 0.02562 * 17 16 15 19 19 C 1.40702 * 119.74564 * 359.97438 * 18 17 16 20 20 C 1.41392 * 120.24156 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99994 * 145.59245 * 20 19 18 22 22 C 1.39945 * 120.00273 * 325.57862 * 20 19 18 23 23 N 1.30824 * 119.99972 * 3.70308 * 22 20 19 24 24 Si 1.86798 * 120.00196 * 183.69574 * 22 20 19 25 25 H 1.48495 * 109.47153 * 60.00710 * 24 22 20 26 26 H 1.48500 * 109.46999 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47173 * 300.00355 * 24 22 20 28 28 C 1.37601 * 119.87531 * 277.26329 * 15 12 11 29 29 H 1.08999 * 109.47334 * 172.17126 * 1 2 3 30 30 H 1.09002 * 109.47487 * 292.16801 * 1 2 3 31 31 H 1.08999 * 109.47608 * 52.16774 * 1 2 3 32 32 H 1.09002 * 109.47643 * 305.00884 * 6 4 2 33 33 H 1.09000 * 109.47308 * 65.00441 * 6 4 2 34 34 H 0.96693 * 114.00131 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46347 * 181.38219 * 8 4 2 36 36 H 1.08999 * 109.46351 * 301.34334 * 8 4 2 37 37 H 1.09002 * 109.49619 * 58.58502 * 9 8 4 38 38 H 1.08993 * 109.50309 * 178.65107 * 9 8 4 39 39 H 1.09000 * 109.58646 * 174.41991 * 10 9 8 40 40 H 1.09006 * 109.58781 * 294.70371 * 10 9 8 41 41 H 1.07998 * 119.74927 * 359.95051 * 16 15 12 42 42 H 1.07995 * 119.88230 * 180.02562 * 17 16 15 43 43 H 1.08002 * 120.12664 * 179.97438 * 18 17 16 44 44 H 0.96995 * 120.00240 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.12079 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6049 -1.7246 -1.2921 6 6 1.6509 0.0615 -2.4967 7 8 2.0272 -0.6745 -3.6624 8 6 3.5677 -0.8434 -1.1729 9 6 3.9603 -1.6608 0.0599 10 6 3.4685 -0.9436 1.3211 11 7 2.0253 -0.6991 1.1937 12 16 0.9769 -1.2023 2.3727 13 8 -0.2379 -1.5341 1.7143 14 8 1.6966 -2.1197 3.1847 15 6 0.6266 0.1935 3.3895 16 6 -0.5280 0.9309 3.1763 17 6 -0.8167 2.0309 3.9687 18 6 0.0426 2.4034 4.9774 19 6 1.2173 1.6624 5.2029 20 6 2.1070 2.0354 6.2366 21 1 2.6481 1.2771 6.7830 22 6 2.2868 3.3870 6.5514 23 7 1.5785 4.3010 5.9394 24 14 3.5380 3.8863 7.8454 25 1 4.8891 3.4323 7.4288 26 1 3.5354 5.3640 7.9924 27 1 3.1839 3.2595 9.1442 28 6 1.4971 0.5441 4.3958 29 1 -0.3634 -1.0181 -0.1400 30 1 -0.3634 0.3878 0.9517 31 1 -0.3634 0.6303 -0.8116 32 1 0.5728 0.2227 -2.5011 33 1 2.1620 1.0242 -2.4942 34 1 1.8084 -0.2326 -4.4942 35 1 3.9381 -1.3391 -2.0702 36 1 4.0045 0.1528 -1.1022 37 1 3.5036 -2.6488 0.0018 38 1 5.0447 -1.7630 0.0986 39 1 3.6575 -1.5684 2.1940 40 1 3.9938 0.0053 1.4302 41 1 -1.2075 0.6464 2.3865 42 1 -1.7191 2.5979 3.7941 43 1 -0.1840 3.2610 5.5935 44 1 1.7029 5.2378 6.1578 45 1 2.3939 -0.0341 4.5626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591332972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:31 Heat of formation + Delta-G solvation = -123.310746 kcal Electronic energy + Delta-G solvation = -28680.118615 eV Core-core repulsion = 24788.321794 eV Total energy + Delta-G solvation = -3891.796821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.31093 -39.48166 -38.49955 -37.41550 -36.91142 -35.61412 -33.86634 -33.56738 -31.91097 -31.59720 -28.67952 -27.32328 -26.70806 -24.37010 -23.57266 -22.84731 -22.53339 -21.22725 -20.25785 -19.35278 -18.32835 -18.09138 -17.77846 -17.21652 -16.86653 -16.55609 -16.08065 -15.88106 -15.37477 -15.31644 -15.20717 -15.06213 -14.79921 -14.34179 -14.18299 -13.97704 -13.79454 -13.49490 -13.39129 -13.26444 -13.18688 -12.92334 -12.90263 -12.79291 -12.66067 -12.47777 -12.28740 -12.15261 -11.87439 -11.69098 -11.57828 -11.36951 -11.27063 -11.19571 -11.08959 -10.70716 -10.01332 -9.78060 -9.44944 -8.60226 -6.50534 -0.53843 0.39622 0.82326 1.37994 1.46162 1.49594 2.02004 2.19700 2.62753 2.76451 3.25135 3.44160 3.51062 3.57567 3.79954 3.98171 4.08262 4.21683 4.27757 4.30105 4.36994 4.41712 4.52839 4.58391 4.70402 4.75458 4.82651 4.83838 4.85801 4.91108 4.98782 5.02141 5.08914 5.16029 5.23932 5.29330 5.31836 5.40665 5.46639 5.52616 5.55614 5.71532 5.88056 5.98357 6.10928 6.53491 6.82862 6.85563 6.99116 8.33632 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.003580 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.286838 B = 7819.954026 C = 8099.504804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.159 3.841 3 H 0.086 0.914 4 C -0.094 4.094 5 H 0.068 0.932 6 C 0.083 3.917 7 O -0.589 6.589 8 C -0.105 4.105 9 C -0.127 4.127 10 C 0.105 3.895 11 N -0.989 5.989 12 S 2.707 3.293 13 O -0.973 6.973 14 O -0.998 6.998 15 C -0.647 4.647 16 C -0.136 4.136 17 C -0.129 4.129 18 C -0.127 4.127 19 C 0.058 3.942 20 C -0.502 4.502 21 H 0.075 0.925 22 C 0.033 3.967 23 N -0.839 5.839 24 Si 0.987 3.013 25 H -0.261 1.261 26 H -0.267 1.267 27 H -0.262 1.262 28 C -0.131 4.131 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.288 0.712 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 -2.843 -15.563 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.054 3.946 3 H 0.104 0.896 4 C -0.114 4.114 5 H 0.086 0.914 6 C 0.005 3.995 7 O -0.397 6.397 8 C -0.142 4.142 9 C -0.166 4.166 10 C -0.019 4.019 11 N -0.829 5.829 12 S 2.803 3.197 13 O -0.963 6.963 14 O -0.988 6.988 15 C -0.736 4.736 16 C -0.156 4.156 17 C -0.148 4.148 18 C -0.147 4.147 19 C 0.055 3.945 20 C -0.533 4.533 21 H 0.093 0.907 22 C -0.180 4.180 23 N -0.466 5.466 24 Si 0.808 3.192 25 H -0.186 1.186 26 H -0.191 1.191 27 H -0.186 1.186 28 C -0.152 4.152 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.247 0.753 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.157 0.843 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.099 0.901 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.661 -3.862 -15.000 15.716 hybrid contribution 0.189 1.471 0.819 1.694 sum 2.850 -2.391 -14.180 14.660 Atomic orbital electron populations 1.22951 0.93190 1.05339 1.04025 1.21040 0.94422 0.95957 0.83219 0.89563 1.21481 0.97431 0.99898 0.92611 0.91375 1.22163 0.99304 0.93789 0.84269 1.86406 1.85725 1.50499 1.17105 1.21466 0.94057 1.00928 0.97787 1.21888 1.02244 0.98832 0.93633 1.21711 0.78518 1.01617 1.00086 1.57572 1.18277 1.74505 1.32507 1.01241 0.72725 0.73511 0.72229 1.93578 1.45833 1.83543 1.73394 1.93455 1.73979 1.61732 1.69668 1.30363 1.05365 1.22711 1.15130 1.20641 0.96521 0.96563 1.01900 1.21235 0.99682 0.97340 0.96560 1.21914 0.93131 1.00918 0.98738 1.18060 0.92162 0.91537 0.92766 1.19768 1.23289 0.93508 1.16728 0.90656 1.26691 0.97879 0.95766 0.97639 1.69743 1.36334 1.02814 1.37746 0.85165 0.78268 0.77831 0.77951 1.18567 1.19079 1.18596 1.20933 0.98353 1.00049 0.95866 0.89552 0.92219 0.88597 0.92112 0.92047 0.75311 0.90622 0.90980 0.92242 0.88419 0.89695 0.90166 0.84335 0.85338 0.86050 0.90139 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.14 7.13 71.98 0.51 -4.62 16 2 C 0.16 3.98 2.97 44.97 0.13 4.11 16 3 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.09 -1.99 2.04 -10.72 -0.02 -2.02 16 5 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 6 C 0.08 1.34 6.30 71.98 0.45 1.79 16 7 O -0.59 -9.54 13.18 -148.98 -1.96 -11.50 16 8 C -0.10 -2.03 5.08 30.62 0.16 -1.87 16 9 C -0.13 -2.65 6.08 30.67 0.19 -2.46 16 10 C 0.11 2.78 6.50 86.36 0.56 3.34 16 11 N -0.99 -29.80 3.29 -490.76 -1.61 -31.41 16 12 S 2.71 102.32 5.22 -56.49 -0.29 102.03 16 13 O -0.97 -37.09 12.54 -128.00 -1.60 -38.69 16 14 O -1.00 -42.81 15.87 -128.00 -2.03 -44.84 16 15 C -0.65 -28.22 5.88 22.22 0.13 -28.09 16 16 C -0.14 -5.69 8.53 22.46 0.19 -5.50 16 17 C -0.13 -5.68 10.02 22.22 0.22 -5.45 16 18 C -0.13 -6.45 8.67 22.73 0.20 -6.25 16 19 C 0.06 3.07 5.55 -21.29 -0.12 2.95 16 20 C -0.50 -26.74 9.05 23.46 0.21 -26.53 16 21 H 0.08 3.90 7.85 -2.91 -0.02 3.87 16 22 C 0.03 1.62 5.42 85.26 0.46 2.08 16 23 N -0.84 -42.27 10.61 21.83 0.23 -42.04 16 24 Si 0.99 37.62 29.56 68.60 2.03 39.65 16 25 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 26 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 27 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 28 C -0.13 -6.44 9.26 22.73 0.21 -6.23 16 29 H 0.09 2.47 6.41 -2.39 -0.02 2.45 16 30 H 0.06 1.79 3.26 -2.39 -0.01 1.78 16 31 H 0.10 1.85 6.89 -2.39 -0.02 1.83 16 32 H 0.06 0.87 6.56 -2.39 -0.02 0.86 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.40 2.71 9.12 -74.06 -0.68 2.03 16 35 H 0.08 1.42 7.79 -2.39 -0.02 1.40 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 2.44 6.74 -2.39 -0.02 2.43 16 40 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.14 5.03 5.81 -2.91 -0.02 5.01 16 42 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.12 6.39 6.14 -2.91 -0.02 6.38 16 44 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 45 H 0.11 5.12 7.78 -2.91 -0.02 5.10 16 Total: -1.00 -66.30 357.77 -1.41 -67.72 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.35 Total: 33.85 kcal Atomic # 6 Polarization: -78.24 SS G_CDS: 3.49 Total: -74.75 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.38 Total: -73.46 kcal Atomic # 8 Polarization: -89.43 SS G_CDS: -5.60 Total: -95.03 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Atomic # 16 Polarization: 102.32 SS G_CDS: -0.29 Total: 102.03 kcal Total: -66.30 -1.41 -67.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591332972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.594 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds