Wall clock time and date at job start Tue Mar 31 2020 23:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49811 * 2 1 4 4 C 1.53038 * 109.49630 * 120.06103 * 2 1 3 5 5 C 1.53043 * 109.53897 * 181.31981 * 4 2 1 6 6 H 1.08997 * 109.49907 * 58.58078 * 5 4 2 7 7 C 1.52998 * 109.52836 * 178.66971 * 5 4 2 8 8 O 1.42897 * 109.47235 * 184.85400 * 7 5 4 9 9 C 1.53199 * 109.31168 * 298.63376 * 5 4 2 10 10 N 1.46928 * 108.77139 * 54.63692 * 9 5 4 11 11 S 1.65593 * 120.63168 * 126.37018 * 10 9 5 12 12 O 1.42104 * 106.40480 * 336.45780 * 11 10 9 13 13 O 1.42099 * 106.40667 * 203.53615 * 11 10 9 14 14 C 1.76207 * 107.22025 * 89.99725 * 11 10 9 15 15 C 1.38648 * 119.87725 * 90.00026 * 14 11 10 16 16 C 1.38617 * 120.50204 * 180.02562 * 15 14 11 17 17 C 1.37635 * 120.24692 * 0.25628 * 16 15 14 18 18 C 1.40702 * 119.74379 * 359.45305 * 17 16 15 19 19 C 1.41395 * 120.24432 * 180.25568 * 18 17 16 20 20 H 1.07993 * 119.99866 * 204.57276 * 19 18 17 21 21 C 1.39949 * 119.99853 * 24.57151 * 19 18 17 22 22 N 1.30818 * 120.00389 * 17.69321 * 21 19 18 23 23 Si 1.86805 * 119.99831 * 197.69330 * 21 19 18 24 24 H 1.48501 * 109.46860 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47026 * 119.99870 * 23 21 19 26 26 H 1.48492 * 109.47321 * 240.00064 * 23 21 19 27 27 C 1.37597 * 119.87375 * 269.98076 * 14 11 10 28 28 C 1.46928 * 118.73806 * 306.63950 * 10 9 5 29 29 H 1.08994 * 109.47338 * 299.93608 * 1 2 3 30 30 H 1.08998 * 109.46921 * 59.93987 * 1 2 3 31 31 H 1.08999 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46062 * 61.29770 * 4 2 1 33 33 H 1.09000 * 109.44969 * 301.32875 * 4 2 1 34 34 H 1.09007 * 109.46573 * 304.85376 * 7 5 4 35 35 H 1.08999 * 109.47241 * 64.84910 * 7 5 4 36 36 H 0.96705 * 113.99818 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.58682 * 294.84803 * 9 5 4 38 38 H 1.08994 * 109.70445 * 174.49086 * 9 5 4 39 39 H 1.08006 * 119.75156 * 359.97438 * 15 14 11 40 40 H 1.07996 * 119.87389 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.12711 * 179.70235 * 17 16 15 42 42 H 0.97000 * 120.00438 * 180.02562 * 22 21 19 43 43 H 1.08005 * 120.12778 * 359.97438 * 27 14 11 44 44 H 1.08999 * 109.58662 * 173.14751 * 28 10 9 45 45 H 1.08998 * 109.58916 * 293.57160 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7226 1.2486 5 6 3.5708 -0.6945 1.2663 6 1 3.9159 0.3393 1.2540 7 6 4.0805 -1.3880 2.5313 8 8 5.5021 -1.2624 2.6036 9 6 4.1054 -1.4267 0.0313 10 7 3.5047 -0.8294 -1.1692 11 16 4.4588 -0.2848 -2.4083 12 8 5.7326 -0.0084 -1.8423 13 8 3.6923 0.6855 -3.1084 14 6 4.6901 -1.6325 -3.5196 15 6 3.7994 -1.8270 -4.5642 16 6 3.9687 -2.8832 -5.4458 17 6 5.0224 -3.7547 -5.2894 18 6 5.9361 -3.5635 -4.2366 19 6 7.0254 -4.4493 -4.0693 20 1 7.4804 -4.5680 -3.0972 21 6 7.5139 -5.1721 -5.1636 22 7 7.2187 -4.7952 -6.3810 23 14 8.5877 -6.6753 -4.8858 24 1 8.7720 -6.8893 -3.4279 25 1 7.9336 -7.8678 -5.4820 26 1 9.9105 -6.4640 -5.5267 27 6 5.7542 -2.4877 -3.3478 28 6 2.0416 -0.7191 -1.2469 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6967 -1.7568 1.2359 33 1 1.6581 -0.2235 2.1389 34 1 3.6295 -0.9223 3.4077 35 1 3.8100 -2.4435 2.5011 36 1 5.8947 -1.6797 3.3826 37 1 3.8376 -2.4818 0.0876 38 1 5.1897 -1.3268 -0.0144 39 1 2.9668 -1.1509 -4.6916 40 1 3.2685 -3.0254 -6.2557 41 1 5.1497 -4.5799 -5.9746 42 1 7.5570 -5.2964 -7.1395 43 1 6.4473 -2.3340 -2.5338 44 1 1.7647 -0.1503 -2.1345 45 1 1.6022 -1.7153 -1.2970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591469327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:35 Heat of formation + Delta-G solvation = -122.199746 kcal Electronic energy + Delta-G solvation = -28182.477089 eV Core-core repulsion = 24290.728445 eV Total energy + Delta-G solvation = -3891.748644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.19047 -37.60850 -36.80947 -36.56591 -35.24665 -33.82538 -33.43209 -32.48334 -30.05556 -29.75606 -26.87072 -25.90436 -25.45897 -24.36840 -21.80537 -21.03686 -20.83724 -20.20741 -18.64600 -17.80272 -17.43256 -17.04713 -16.03230 -15.91891 -15.34554 -15.11514 -14.78523 -14.65229 -14.30988 -14.11874 -13.75730 -13.52153 -13.39078 -13.32198 -12.75255 -12.60931 -12.52945 -12.22900 -11.90517 -11.67784 -11.58042 -11.54205 -11.40803 -11.36910 -11.31269 -11.03917 -11.01470 -10.90433 -10.85216 -10.57254 -10.53894 -10.38999 -10.08634 -9.74613 -9.59602 -9.34011 -8.72587 -8.00267 -7.67970 -6.90494 -4.51386 1.00965 2.22910 2.64487 3.01203 3.05084 3.08040 3.49677 3.84418 4.02171 4.30100 4.43959 4.59714 4.65658 4.77218 4.85528 5.04666 5.10772 5.21723 5.27437 5.36172 5.43839 5.45581 5.52145 5.55368 5.66296 5.69272 5.81040 5.91487 5.97956 6.05042 6.05686 6.12511 6.19950 6.33367 6.36934 6.67682 6.72078 6.79172 6.96556 7.07180 7.24571 7.41245 7.53581 7.74639 7.82862 7.96494 8.42411 8.69074 8.74106 10.05229 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.003677 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.835199 B = 7613.867401 C = 8714.907970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.104 4.104 5 C -0.101 4.101 6 H 0.083 0.917 7 C 0.083 3.917 8 O -0.568 6.568 9 C 0.129 3.871 10 N -1.000 6.000 11 S 2.685 3.315 12 O -0.966 6.966 13 O -0.974 6.974 14 C -0.631 4.631 15 C -0.148 4.148 16 C -0.121 4.121 17 C -0.119 4.119 18 C 0.092 3.908 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.794 5.794 23 Si 0.911 3.089 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.125 4.125 28 C 0.123 3.877 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.378 0.622 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.443 2.749 14.129 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.094 0.906 4 C -0.142 4.142 5 C -0.121 4.121 6 H 0.101 0.899 7 C 0.004 3.996 8 O -0.373 6.373 9 C 0.003 3.997 10 N -0.836 5.836 11 S 2.783 3.217 12 O -0.956 6.956 13 O -0.965 6.965 14 C -0.723 4.723 15 C -0.169 4.169 16 C -0.140 4.140 17 C -0.139 4.139 18 C 0.088 3.912 19 C -0.490 4.490 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.419 5.419 23 Si 0.735 3.265 24 H -0.182 1.182 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.147 4.147 28 C -0.002 4.002 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.225 0.775 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.140 3.882 13.239 17.122 hybrid contribution 0.504 -1.741 0.151 1.819 sum -9.636 2.141 13.390 16.636 Atomic orbital electron populations 1.21768 0.94365 1.02095 1.02041 1.21375 0.95743 1.00307 0.94983 0.90583 1.21524 0.93785 1.01142 0.97745 1.21498 0.95480 1.01297 0.93868 0.89907 1.22163 0.81443 0.99050 0.96910 1.86569 1.20280 1.81023 1.49440 1.21393 0.99267 0.96363 0.82639 1.57782 1.15851 1.78369 1.31627 1.01838 0.72588 0.74551 0.72738 1.93529 1.40079 1.84118 1.77908 1.93487 1.71695 1.58046 1.73226 1.29830 1.06548 1.20850 1.15060 1.20068 0.99610 1.00289 0.96931 1.20806 0.98520 0.96295 0.98428 1.21637 0.92984 0.99292 0.99939 1.17687 0.92113 0.90389 0.90998 1.19640 1.13065 1.19990 0.96267 0.89896 1.25940 0.96046 0.97902 0.94439 1.69789 1.37326 1.35483 0.99309 0.86206 0.79473 0.80720 0.80069 1.18223 1.19635 1.19830 1.20755 0.96694 0.94845 1.02372 1.21386 0.79155 1.00897 0.98809 0.92484 0.92160 0.92396 0.91419 0.91689 0.93597 0.93380 0.77547 0.91549 0.88036 0.87717 0.88405 0.85759 0.90623 0.87089 0.88858 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 37.16 0.34 -0.83 16 2 C -0.10 -1.08 2.86 -90.72 -0.26 -1.34 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.10 -0.97 4.45 -26.69 -0.12 -1.09 16 5 C -0.10 -1.16 2.58 -90.50 -0.23 -1.39 16 6 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 7 C 0.08 0.78 6.43 37.16 0.24 1.02 16 8 O -0.57 -6.28 13.31 -35.23 -0.47 -6.75 16 9 C 0.13 1.84 5.59 -3.71 -0.02 1.82 16 10 N -1.00 -15.69 3.30 -113.76 -0.37 -16.06 16 11 S 2.68 53.60 5.73 -107.50 -0.62 52.99 16 12 O -0.97 -21.60 15.86 -57.17 -0.91 -22.51 16 13 O -0.97 -20.59 15.85 -57.17 -0.91 -21.50 16 14 C -0.63 -14.31 5.97 -39.66 -0.24 -14.54 16 15 C -0.15 -3.30 9.53 -39.29 -0.37 -3.67 16 16 C -0.12 -2.77 10.02 -39.66 -0.40 -3.17 16 17 C -0.12 -3.00 8.70 -38.87 -0.34 -3.34 16 18 C 0.09 2.41 5.57 -106.82 -0.60 1.81 16 19 C -0.46 -11.96 9.05 -37.74 -0.34 -12.30 16 20 H 0.08 2.06 7.91 -52.49 -0.41 1.65 16 21 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 22 N -0.79 -20.03 10.96 55.55 0.61 -19.42 16 23 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 C -0.13 -3.10 9.26 -38.87 -0.36 -3.46 16 28 C 0.12 1.59 5.73 -3.93 -0.02 1.56 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.38 2.33 9.12 45.56 0.42 2.74 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.67 6.76 -51.93 -0.35 1.32 16 39 H 0.10 2.10 7.60 -52.48 -0.40 1.70 16 40 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 41 H 0.12 3.18 6.16 -52.48 -0.32 2.85 16 42 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 43 H 0.11 2.65 7.60 -52.48 -0.40 2.25 16 44 H 0.09 1.25 6.91 -51.93 -0.36 0.90 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -32.21 373.97 -10.90 -43.12 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.04 Total: 8.51 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: -2.81 Total: -37.16 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.23 Total: -35.48 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -2.28 Total: -50.75 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 16 Polarization: 53.60 SS G_CDS: -0.62 Total: 52.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.21 -10.90 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591469327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.084 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds