Wall clock time and date at job start Tue Mar 31 2020 23:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49811 * 2 1 4 4 C 1.53038 * 109.49630 * 120.06103 * 2 1 3 5 5 C 1.53043 * 109.53897 * 181.31981 * 4 2 1 6 6 H 1.08997 * 109.49907 * 58.58078 * 5 4 2 7 7 C 1.52998 * 109.52836 * 178.66971 * 5 4 2 8 8 O 1.42897 * 109.47235 * 184.85400 * 7 5 4 9 9 C 1.53199 * 109.31168 * 298.63376 * 5 4 2 10 10 N 1.46928 * 108.77139 * 54.63692 * 9 5 4 11 11 S 1.65593 * 120.63168 * 126.37018 * 10 9 5 12 12 O 1.42104 * 106.40480 * 336.45780 * 11 10 9 13 13 O 1.42099 * 106.40667 * 203.53615 * 11 10 9 14 14 C 1.76207 * 107.22025 * 89.99725 * 11 10 9 15 15 C 1.38648 * 119.87725 * 90.00026 * 14 11 10 16 16 C 1.38617 * 120.50204 * 180.02562 * 15 14 11 17 17 C 1.37635 * 120.24692 * 0.25628 * 16 15 14 18 18 C 1.40702 * 119.74379 * 359.45305 * 17 16 15 19 19 C 1.41395 * 120.24432 * 180.25568 * 18 17 16 20 20 H 1.07993 * 119.99866 * 204.57276 * 19 18 17 21 21 C 1.39949 * 119.99853 * 24.57151 * 19 18 17 22 22 N 1.30818 * 120.00389 * 17.69321 * 21 19 18 23 23 Si 1.86805 * 119.99831 * 197.69330 * 21 19 18 24 24 H 1.48501 * 109.46860 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47026 * 119.99870 * 23 21 19 26 26 H 1.48492 * 109.47321 * 240.00064 * 23 21 19 27 27 C 1.37597 * 119.87375 * 269.98076 * 14 11 10 28 28 C 1.46928 * 118.73806 * 306.63950 * 10 9 5 29 29 H 1.08994 * 109.47338 * 299.93608 * 1 2 3 30 30 H 1.08998 * 109.46921 * 59.93987 * 1 2 3 31 31 H 1.08999 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46062 * 61.29770 * 4 2 1 33 33 H 1.09000 * 109.44969 * 301.32875 * 4 2 1 34 34 H 1.09007 * 109.46573 * 304.85376 * 7 5 4 35 35 H 1.08999 * 109.47241 * 64.84910 * 7 5 4 36 36 H 0.96705 * 113.99818 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.58682 * 294.84803 * 9 5 4 38 38 H 1.08994 * 109.70445 * 174.49086 * 9 5 4 39 39 H 1.08006 * 119.75156 * 359.97438 * 15 14 11 40 40 H 1.07996 * 119.87389 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.12711 * 179.70235 * 17 16 15 42 42 H 0.97000 * 120.00438 * 180.02562 * 22 21 19 43 43 H 1.08005 * 120.12778 * 359.97438 * 27 14 11 44 44 H 1.08999 * 109.58662 * 173.14751 * 28 10 9 45 45 H 1.08998 * 109.58916 * 293.57160 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7226 1.2486 5 6 3.5708 -0.6945 1.2663 6 1 3.9159 0.3393 1.2540 7 6 4.0805 -1.3880 2.5313 8 8 5.5021 -1.2624 2.6036 9 6 4.1054 -1.4267 0.0313 10 7 3.5047 -0.8294 -1.1692 11 16 4.4588 -0.2848 -2.4083 12 8 5.7326 -0.0084 -1.8423 13 8 3.6923 0.6855 -3.1084 14 6 4.6901 -1.6325 -3.5196 15 6 3.7994 -1.8270 -4.5642 16 6 3.9687 -2.8832 -5.4458 17 6 5.0224 -3.7547 -5.2894 18 6 5.9361 -3.5635 -4.2366 19 6 7.0254 -4.4493 -4.0693 20 1 7.4804 -4.5680 -3.0972 21 6 7.5139 -5.1721 -5.1636 22 7 7.2187 -4.7952 -6.3810 23 14 8.5877 -6.6753 -4.8858 24 1 8.7720 -6.8893 -3.4279 25 1 7.9336 -7.8678 -5.4820 26 1 9.9105 -6.4640 -5.5267 27 6 5.7542 -2.4877 -3.3478 28 6 2.0416 -0.7191 -1.2469 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6967 -1.7568 1.2359 33 1 1.6581 -0.2235 2.1389 34 1 3.6295 -0.9223 3.4077 35 1 3.8100 -2.4435 2.5011 36 1 5.8947 -1.6797 3.3826 37 1 3.8376 -2.4818 0.0876 38 1 5.1897 -1.3268 -0.0144 39 1 2.9668 -1.1509 -4.6916 40 1 3.2685 -3.0254 -6.2557 41 1 5.1497 -4.5799 -5.9746 42 1 7.5570 -5.2964 -7.1395 43 1 6.4473 -2.3340 -2.5338 44 1 1.7647 -0.1503 -2.1345 45 1 1.6022 -1.7153 -1.2970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591469327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:34 Heat of formation + Delta-G solvation = -144.800331 kcal Electronic energy + Delta-G solvation = -28183.457124 eV Core-core repulsion = 24290.728445 eV Total energy + Delta-G solvation = -3892.728679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.13328 -39.47243 -38.39788 -37.48983 -36.95712 -35.69359 -34.43608 -33.40481 -31.94565 -31.61063 -27.74609 -27.36430 -26.65476 -25.47019 -23.63993 -22.83457 -21.74245 -21.15466 -20.29593 -19.36227 -18.61024 -18.17255 -17.76765 -17.29156 -16.90963 -16.53671 -16.21227 -15.96653 -15.33602 -15.22020 -15.12538 -14.99213 -14.65864 -14.53690 -14.34102 -13.75273 -13.66130 -13.44111 -13.32961 -13.29154 -13.11035 -13.08649 -12.94108 -12.86459 -12.71102 -12.61189 -12.31777 -12.20093 -11.91143 -11.72739 -11.57618 -11.49864 -11.38537 -11.26063 -11.16464 -10.82687 -9.99564 -9.82702 -9.59081 -8.75019 -6.47721 -0.58548 0.37419 0.81187 1.36515 1.43692 1.52436 2.02201 2.17239 2.53797 2.72605 3.29428 3.32939 3.48314 3.75852 3.86088 3.92521 3.99484 4.27096 4.28689 4.33938 4.40194 4.46085 4.58250 4.65639 4.70723 4.74881 4.80461 4.86717 4.87454 4.89256 4.90544 5.02815 5.06845 5.15542 5.18033 5.27771 5.29365 5.38077 5.44459 5.52874 5.54338 5.67520 5.85411 5.91031 6.07932 6.49892 6.77226 6.82046 7.00830 8.23537 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.003677 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.835199 B = 7613.867401 C = 8714.907970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.064 0.936 4 C -0.098 4.098 5 C -0.100 4.100 6 H 0.063 0.937 7 C 0.083 3.917 8 O -0.599 6.599 9 C 0.122 3.878 10 N -0.992 5.992 11 S 2.706 3.294 12 O -0.995 6.995 13 O -0.985 6.985 14 C -0.638 4.638 15 C -0.149 4.149 16 C -0.121 4.121 17 C -0.140 4.140 18 C 0.064 3.936 19 C -0.497 4.497 20 H 0.080 0.920 21 C 0.036 3.964 22 N -0.824 5.824 23 Si 0.986 3.014 24 H -0.257 1.257 25 H -0.259 1.259 26 H -0.266 1.266 27 C -0.148 4.148 28 C 0.111 3.889 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.292 0.708 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 2.113 15.664 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.083 0.917 4 C -0.135 4.135 5 C -0.121 4.121 6 H 0.082 0.918 7 C 0.005 3.995 8 O -0.408 6.408 9 C -0.003 4.003 10 N -0.830 5.830 11 S 2.801 3.199 12 O -0.985 6.985 13 O -0.975 6.975 14 C -0.727 4.727 15 C -0.170 4.170 16 C -0.140 4.140 17 C -0.160 4.160 18 C 0.061 3.939 19 C -0.526 4.526 20 H 0.098 0.902 21 C -0.179 4.179 22 N -0.450 5.450 23 Si 0.806 3.194 24 H -0.180 1.180 25 H -0.184 1.184 26 H -0.191 1.191 27 C -0.169 4.169 28 C -0.013 4.013 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.133 0.867 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.055 3.236 14.755 19.326 hybrid contribution 1.020 -1.444 -0.291 1.792 sum -11.035 1.793 14.464 18.281 Atomic orbital electron populations 1.21740 0.92183 1.03040 1.02790 1.21392 0.97408 0.99384 0.94123 0.91729 1.21526 0.91700 1.02216 0.98097 1.21532 0.97305 0.99930 0.93320 0.91823 1.22247 0.80791 0.99940 0.96566 1.86523 1.21521 1.81659 1.51072 1.21571 0.97834 0.97604 0.83282 1.57506 1.16921 1.78238 1.30383 1.01150 0.72247 0.73778 0.72713 1.93486 1.42346 1.84421 1.78257 1.93461 1.71718 1.58209 1.74127 1.30313 1.05659 1.20857 1.15893 1.20453 1.00005 1.00309 0.96232 1.21156 0.98166 0.95603 0.99100 1.21655 0.94087 1.00132 1.00108 1.18047 0.92849 0.91133 0.91905 1.19897 1.14066 1.21761 0.96920 0.90232 1.26805 0.97125 1.00314 0.93689 1.69823 1.38240 1.36695 1.00205 0.85096 0.77588 0.76715 0.79973 1.18048 1.18356 1.19114 1.20792 0.97845 0.95629 1.02637 1.21761 0.77027 1.02327 1.00205 0.90854 0.92389 0.91330 0.89948 0.89144 0.90939 0.91884 0.75355 0.90206 0.90956 0.85124 0.85282 0.86680 0.89667 0.87704 0.89561 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 71.98 0.66 -1.14 16 2 C -0.10 -1.88 2.86 -10.86 -0.03 -1.91 16 3 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 4 C -0.10 -1.50 4.45 30.62 0.14 -1.36 16 5 C -0.10 -2.15 2.58 -10.71 -0.03 -2.18 16 6 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 7 C 0.08 1.37 6.43 71.98 0.46 1.83 16 8 O -0.60 -12.75 13.31 -148.98 -1.98 -14.73 16 9 C 0.12 3.47 5.59 86.36 0.48 3.95 16 10 N -0.99 -30.78 3.30 -513.84 -1.69 -32.48 16 11 S 2.71 109.80 5.73 -56.49 -0.32 109.48 16 12 O -0.99 -46.23 15.86 -128.00 -2.03 -48.26 16 13 O -0.98 -41.51 15.85 -128.00 -2.03 -43.54 16 14 C -0.64 -29.51 5.97 22.22 0.13 -29.37 16 15 C -0.15 -6.60 9.53 22.46 0.21 -6.39 16 16 C -0.12 -5.52 10.02 22.22 0.22 -5.30 16 17 C -0.14 -7.26 8.70 22.73 0.20 -7.07 16 18 C 0.06 3.50 5.57 -21.29 -0.12 3.38 16 19 C -0.50 -26.91 9.05 23.46 0.21 -26.70 16 20 H 0.08 4.17 7.91 -2.91 -0.02 4.14 16 21 C 0.04 1.80 5.14 85.26 0.44 2.23 16 22 N -0.82 -42.41 10.96 21.83 0.24 -42.17 16 23 Si 0.99 37.51 29.59 68.60 2.03 39.54 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 25 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 26 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 27 C -0.15 -7.64 9.26 22.73 0.21 -7.43 16 28 C 0.11 2.68 5.73 86.22 0.49 3.18 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.40 4.45 9.12 -74.05 -0.68 3.78 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.49 6.76 -2.39 -0.02 2.47 16 39 H 0.13 5.03 7.60 -2.91 -0.02 5.01 16 40 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 41 H 0.12 6.08 6.16 -2.91 -0.02 6.06 16 42 H 0.29 13.43 8.30 -92.71 -0.77 12.67 16 43 H 0.10 5.36 7.60 -2.91 -0.02 5.33 16 44 H 0.09 2.21 6.91 -2.39 -0.02 2.19 16 45 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -72.08 373.97 -1.78 -73.86 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.32 Total: 32.57 kcal Atomic # 6 Polarization: -77.96 SS G_CDS: 3.69 Total: -74.27 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.45 Total: -74.64 kcal Atomic # 8 Polarization: -100.49 SS G_CDS: -6.04 Total: -106.53 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Atomic # 16 Polarization: 109.80 SS G_CDS: -0.32 Total: 109.48 kcal Total: -72.08 -1.78 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591469327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.941 kcal (2) G-P(sol) polarization free energy of solvation -72.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds