Wall clock time and date at job start Tue Mar 31 2020 23:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.49441 * 2 1 4 4 C 1.53046 * 109.49478 * 120.06248 * 2 1 3 5 5 C 1.53042 * 109.54026 * 58.61941 * 4 2 1 6 6 H 1.08998 * 109.49655 * 301.38362 * 5 4 2 7 7 C 1.52992 * 109.49661 * 181.31303 * 5 4 2 8 8 O 1.42909 * 109.46743 * 174.99770 * 7 5 4 9 9 C 1.53195 * 109.30813 * 61.36298 * 5 4 2 10 10 N 1.46924 * 108.77699 * 305.36026 * 9 5 4 11 11 S 1.65599 * 120.63548 * 233.59010 * 10 9 5 12 12 O 1.42095 * 106.40242 * 203.54576 * 11 10 9 13 13 O 1.42102 * 106.39986 * 336.46356 * 11 10 9 14 14 C 1.76198 * 107.21807 * 90.00198 * 11 10 9 15 15 C 1.38656 * 119.87361 * 90.00364 * 14 11 10 16 16 C 1.38617 * 120.50132 * 179.97438 * 15 14 11 17 17 C 1.37641 * 120.24388 * 0.02562 * 16 15 14 18 18 C 1.40694 * 119.74559 * 359.97438 * 17 16 15 19 19 C 1.41403 * 120.24299 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00121 * 204.38850 * 19 18 17 21 21 C 1.39952 * 119.99866 * 24.38440 * 19 18 17 22 22 N 1.30828 * 119.99876 * 17.87244 * 21 19 18 23 23 Si 1.86793 * 119.99799 * 197.87119 * 21 19 18 24 24 H 1.48493 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46835 * 120.00536 * 23 21 19 26 26 H 1.48507 * 109.47079 * 240.00134 * 23 21 19 27 27 C 1.37591 * 119.87493 * 269.72652 * 14 11 10 28 28 C 1.46929 * 118.73741 * 53.61815 * 10 9 5 29 29 H 1.09000 * 109.46899 * 300.00234 * 1 2 3 30 30 H 1.08996 * 109.47198 * 60.00222 * 1 2 3 31 31 H 1.09002 * 109.46862 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.45688 * 178.64121 * 4 2 1 33 33 H 1.09005 * 109.46025 * 298.60957 * 4 2 1 34 34 H 1.08996 * 109.47445 * 294.99813 * 7 5 4 35 35 H 1.09003 * 109.47231 * 55.00180 * 7 5 4 36 36 H 0.96700 * 113.99764 * 180.02562 * 8 7 5 37 37 H 1.08993 * 109.58572 * 65.15464 * 9 5 4 38 38 H 1.09003 * 109.58394 * 185.43757 * 9 5 4 39 39 H 1.08003 * 119.75155 * 359.97438 * 15 14 11 40 40 H 1.07992 * 119.87342 * 179.97438 * 16 15 14 41 41 H 1.08005 * 120.12243 * 179.97438 * 17 16 15 42 42 H 0.96999 * 119.99717 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.12966 * 0.02562 * 27 14 11 44 44 H 1.08999 * 109.58913 * 186.60068 * 28 10 9 45 45 H 1.09005 * 109.58996 * 66.16952 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5037 -2.1557 1.2664 6 1 0.4139 -2.1359 1.2546 7 6 1.9880 -2.8669 2.5313 8 8 1.3928 -4.1640 2.6060 9 6 2.0154 -2.9038 0.0313 10 7 1.6528 -2.1383 -1.1692 11 16 0.8219 -2.8562 -2.4088 12 8 1.1045 -2.0952 -3.5750 13 8 1.0786 -4.2503 -2.3093 14 6 -0.8955 -2.6417 -2.0786 15 6 -1.5562 -1.5209 -2.5581 16 6 -2.9072 -1.3393 -2.3065 17 6 -3.6078 -2.2719 -1.5759 18 6 -2.9477 -3.4131 -1.0844 19 6 -3.6571 -4.3776 -0.3322 20 1 -3.1299 -5.0169 0.3603 21 6 -5.0425 -4.5036 -0.4850 22 7 -5.6325 -4.0027 -1.5398 23 14 -6.0492 -5.3871 0.8170 24 1 -5.1514 -5.8574 1.9023 25 1 -7.0586 -4.4543 1.3795 26 1 -6.7382 -6.5514 0.2045 27 6 -1.5771 -3.5897 -1.3509 28 6 2.0420 -0.7238 -1.2494 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1306 -0.7435 1.2359 33 1 1.6981 -0.1956 2.1391 34 1 3.0730 -2.9664 2.4995 35 1 1.7020 -2.2850 3.4075 36 1 1.6554 -4.6730 3.3851 37 1 3.0993 -3.0035 0.0877 38 1 1.5592 -3.8928 -0.0119 39 1 -1.0141 -0.7838 -3.1319 40 1 -3.4116 -0.4624 -2.6844 41 1 -4.6603 -2.1283 -1.3806 42 1 -6.5927 -4.0903 -1.6459 43 1 -1.0615 -4.4640 -0.9818 44 1 1.6015 -0.2734 -2.1388 45 1 3.1282 -0.6457 -1.2974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591469329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:39 Heat of formation + Delta-G solvation = -117.152806 kcal Electronic energy + Delta-G solvation = -29200.896647 eV Core-core repulsion = 25309.366854 eV Total energy + Delta-G solvation = -3891.529793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.30291 -37.59242 -36.76667 -36.50894 -35.25227 -33.80469 -33.02122 -32.20525 -30.02553 -29.74425 -26.85585 -25.82277 -25.41761 -24.38494 -21.80207 -21.52238 -20.91544 -19.34715 -18.40008 -17.92377 -17.23274 -17.03111 -15.93391 -15.88766 -15.19940 -15.07728 -14.83061 -14.60352 -14.22012 -14.05337 -13.70717 -13.48050 -13.35542 -13.22224 -13.07326 -12.54897 -12.22528 -11.90560 -11.77702 -11.66715 -11.53325 -11.37221 -11.32392 -11.28629 -11.13535 -11.07315 -10.99587 -10.83998 -10.81259 -10.54996 -10.45036 -10.11585 -10.00461 -9.70691 -9.53977 -9.30784 -8.68607 -7.96784 -7.64141 -6.88040 -4.48023 1.02937 2.25642 2.67109 3.02797 3.07028 3.10060 3.50424 3.86743 4.15160 4.31722 4.46446 4.68987 4.76554 4.86624 4.93960 5.08599 5.19816 5.34128 5.40823 5.45275 5.49271 5.54412 5.61262 5.72057 5.75989 5.87530 5.97529 6.04255 6.08660 6.18666 6.20768 6.22966 6.35626 6.44815 6.69166 6.71887 6.76405 6.82345 6.99153 7.09940 7.27098 7.44396 7.63903 7.77397 7.86524 7.99584 8.45865 8.72192 8.77363 10.07577 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.004781 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.752205 B = 5855.714989 C = 6819.705818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.103 4.103 3 H 0.078 0.922 4 C -0.102 4.102 5 C -0.109 4.109 6 H 0.095 0.905 7 C 0.083 3.917 8 O -0.566 6.566 9 C 0.134 3.866 10 N -0.998 5.998 11 S 2.683 3.317 12 O -0.975 6.975 13 O -0.969 6.969 14 C -0.629 4.629 15 C -0.142 4.142 16 C -0.121 4.121 17 C -0.118 4.118 18 C 0.092 3.908 19 C -0.459 4.459 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.795 5.795 23 Si 0.910 3.090 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.273 1.273 27 C -0.121 4.121 28 C 0.127 3.873 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.377 0.623 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.282 0.718 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.124 6.725 8.196 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.140 4.140 5 C -0.129 4.129 6 H 0.113 0.887 7 C 0.005 3.995 8 O -0.371 6.371 9 C 0.009 3.991 10 N -0.834 5.834 11 S 2.781 3.219 12 O -0.965 6.965 13 O -0.959 6.959 14 C -0.721 4.721 15 C -0.164 4.164 16 C -0.140 4.140 17 C -0.138 4.138 18 C 0.089 3.911 19 C -0.488 4.488 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.420 5.420 23 Si 0.734 3.266 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.142 4.142 28 C 0.001 3.999 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.223 0.777 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.141 0.859 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.109 0.891 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.055 6.495 6.772 15.277 hybrid contribution -1.040 -0.260 1.438 1.794 sum 11.015 6.234 8.210 15.086 Atomic orbital electron populations 1.22001 0.93875 1.03844 1.01585 1.21463 0.97297 0.98805 0.94741 0.90328 1.21451 1.00100 0.94422 0.97977 1.21611 1.03187 0.94543 0.93594 0.88687 1.22162 0.95908 0.84205 0.97242 1.86595 1.72665 1.28594 1.49252 1.21329 0.99851 0.95093 0.82824 1.57798 1.71671 1.19627 1.34321 1.01908 0.74581 0.72887 0.72561 1.93493 1.85231 1.72400 1.45405 1.93523 1.85482 1.30815 1.86126 1.29763 1.22115 1.05200 1.15069 1.20003 0.95212 0.96976 1.04163 1.20771 0.94007 0.98820 1.00424 1.21619 1.00129 0.92902 0.99139 1.17664 0.90843 0.91941 0.90672 1.19642 0.91932 1.16454 1.20798 0.89915 1.25930 0.98538 0.94630 0.95204 1.69798 1.12035 1.36344 1.23841 0.86229 0.79639 0.79407 0.81339 1.18213 1.19684 1.19878 1.20739 0.96094 0.97009 1.00344 1.21431 0.99761 0.80000 0.98684 0.93051 0.92353 0.90740 0.91903 0.91744 0.93819 0.93632 0.77706 0.91753 0.88376 0.87921 0.88610 0.85888 0.90700 0.87189 0.89143 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.48 37.16 0.32 -1.79 16 2 C -0.10 -1.13 3.21 -90.49 -0.29 -1.42 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.10 -1.01 4.71 -26.69 -0.13 -1.14 16 5 C -0.11 -1.35 2.23 -90.50 -0.20 -1.55 16 6 H 0.09 1.43 6.34 -51.93 -0.33 1.10 16 7 C 0.08 0.86 6.43 37.15 0.24 1.09 16 8 O -0.57 -6.86 13.31 -35.23 -0.47 -7.33 16 9 C 0.13 1.89 5.50 -3.71 -0.02 1.87 16 10 N -1.00 -15.32 2.73 -113.52 -0.31 -15.62 16 11 S 2.68 52.93 5.69 -107.50 -0.61 52.32 16 12 O -0.97 -20.48 15.98 -57.17 -0.91 -21.39 16 13 O -0.97 -21.49 15.98 -57.17 -0.91 -22.41 16 14 C -0.63 -13.84 5.04 -39.66 -0.20 -14.04 16 15 C -0.14 -3.06 9.15 -39.29 -0.36 -3.42 16 16 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 17 C -0.12 -2.93 8.70 -38.87 -0.34 -3.27 16 18 C 0.09 2.39 5.58 -106.82 -0.60 1.80 16 19 C -0.46 -11.91 9.06 -37.74 -0.34 -12.25 16 20 H 0.08 2.08 7.91 -52.49 -0.42 1.67 16 21 C 0.07 1.83 5.14 -17.34 -0.09 1.75 16 22 N -0.79 -20.07 10.95 55.55 0.61 -19.46 16 23 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 C -0.12 -2.93 9.26 -38.88 -0.36 -3.29 16 28 C 0.13 1.60 5.77 -3.71 -0.02 1.57 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.07 1.21 4.91 -51.93 -0.26 0.95 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.71 9.12 45.56 0.42 3.12 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.10 1.60 6.97 -51.93 -0.36 1.24 16 39 H 0.10 2.01 7.60 -52.48 -0.40 1.61 16 40 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.12 3.13 6.15 -52.48 -0.32 2.81 16 42 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 43 H 0.11 2.63 7.60 -52.49 -0.40 2.24 16 44 H 0.09 1.19 7.13 -51.93 -0.37 0.82 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -31.52 367.14 -10.69 -42.21 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.80 Total: 10.04 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: -2.79 Total: -37.18 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.30 Total: -35.08 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -2.30 Total: -51.13 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: 52.93 SS G_CDS: -0.61 Total: 52.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.52 -10.69 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591469329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.943 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds