Wall clock time and date at job start Tue Mar 31 2020 23:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.49441 * 2 1 4 4 C 1.53046 * 109.49478 * 120.06248 * 2 1 3 5 5 C 1.53042 * 109.54026 * 58.61941 * 4 2 1 6 6 H 1.08998 * 109.49655 * 301.38362 * 5 4 2 7 7 C 1.52992 * 109.49661 * 181.31303 * 5 4 2 8 8 O 1.42909 * 109.46743 * 174.99770 * 7 5 4 9 9 C 1.53195 * 109.30813 * 61.36298 * 5 4 2 10 10 N 1.46924 * 108.77699 * 305.36026 * 9 5 4 11 11 S 1.65599 * 120.63548 * 233.59010 * 10 9 5 12 12 O 1.42095 * 106.40242 * 203.54576 * 11 10 9 13 13 O 1.42102 * 106.39986 * 336.46356 * 11 10 9 14 14 C 1.76198 * 107.21807 * 90.00198 * 11 10 9 15 15 C 1.38656 * 119.87361 * 90.00364 * 14 11 10 16 16 C 1.38617 * 120.50132 * 179.97438 * 15 14 11 17 17 C 1.37641 * 120.24388 * 0.02562 * 16 15 14 18 18 C 1.40694 * 119.74559 * 359.97438 * 17 16 15 19 19 C 1.41403 * 120.24299 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00121 * 204.38850 * 19 18 17 21 21 C 1.39952 * 119.99866 * 24.38440 * 19 18 17 22 22 N 1.30828 * 119.99876 * 17.87244 * 21 19 18 23 23 Si 1.86793 * 119.99799 * 197.87119 * 21 19 18 24 24 H 1.48493 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46835 * 120.00536 * 23 21 19 26 26 H 1.48507 * 109.47079 * 240.00134 * 23 21 19 27 27 C 1.37591 * 119.87493 * 269.72652 * 14 11 10 28 28 C 1.46929 * 118.73741 * 53.61815 * 10 9 5 29 29 H 1.09000 * 109.46899 * 300.00234 * 1 2 3 30 30 H 1.08996 * 109.47198 * 60.00222 * 1 2 3 31 31 H 1.09002 * 109.46862 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.45688 * 178.64121 * 4 2 1 33 33 H 1.09005 * 109.46025 * 298.60957 * 4 2 1 34 34 H 1.08996 * 109.47445 * 294.99813 * 7 5 4 35 35 H 1.09003 * 109.47231 * 55.00180 * 7 5 4 36 36 H 0.96700 * 113.99764 * 180.02562 * 8 7 5 37 37 H 1.08993 * 109.58572 * 65.15464 * 9 5 4 38 38 H 1.09003 * 109.58394 * 185.43757 * 9 5 4 39 39 H 1.08003 * 119.75155 * 359.97438 * 15 14 11 40 40 H 1.07992 * 119.87342 * 179.97438 * 16 15 14 41 41 H 1.08005 * 120.12243 * 179.97438 * 17 16 15 42 42 H 0.96999 * 119.99717 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.12966 * 0.02562 * 27 14 11 44 44 H 1.08999 * 109.58913 * 186.60068 * 28 10 9 45 45 H 1.09005 * 109.58996 * 66.16952 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5037 -2.1557 1.2664 6 1 0.4139 -2.1359 1.2546 7 6 1.9880 -2.8669 2.5313 8 8 1.3928 -4.1640 2.6060 9 6 2.0154 -2.9038 0.0313 10 7 1.6528 -2.1383 -1.1692 11 16 0.8219 -2.8562 -2.4088 12 8 1.1045 -2.0952 -3.5750 13 8 1.0786 -4.2503 -2.3093 14 6 -0.8955 -2.6417 -2.0786 15 6 -1.5562 -1.5209 -2.5581 16 6 -2.9072 -1.3393 -2.3065 17 6 -3.6078 -2.2719 -1.5759 18 6 -2.9477 -3.4131 -1.0844 19 6 -3.6571 -4.3776 -0.3322 20 1 -3.1299 -5.0169 0.3603 21 6 -5.0425 -4.5036 -0.4850 22 7 -5.6325 -4.0027 -1.5398 23 14 -6.0492 -5.3871 0.8170 24 1 -5.1514 -5.8574 1.9023 25 1 -7.0586 -4.4543 1.3795 26 1 -6.7382 -6.5514 0.2045 27 6 -1.5771 -3.5897 -1.3509 28 6 2.0420 -0.7238 -1.2494 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1306 -0.7435 1.2359 33 1 1.6981 -0.1956 2.1391 34 1 3.0730 -2.9664 2.4995 35 1 1.7020 -2.2850 3.4075 36 1 1.6554 -4.6730 3.3851 37 1 3.0993 -3.0035 0.0877 38 1 1.5592 -3.8928 -0.0119 39 1 -1.0141 -0.7838 -3.1319 40 1 -3.4116 -0.4624 -2.6844 41 1 -4.6603 -2.1283 -1.3806 42 1 -6.5927 -4.0903 -1.6459 43 1 -1.0615 -4.4640 -0.9818 44 1 1.6015 -0.2734 -2.1388 45 1 3.1282 -0.6457 -1.2974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591469329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:38 Heat of formation + Delta-G solvation = -139.396825 kcal Electronic energy + Delta-G solvation = -29201.861220 eV Core-core repulsion = 25309.366854 eV Total energy + Delta-G solvation = -3892.494366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.29110 -39.43554 -38.37112 -37.47144 -36.93919 -35.67472 -34.11903 -33.17531 -31.90732 -31.58351 -27.88961 -27.35418 -26.65281 -25.48719 -23.61540 -22.82158 -22.41335 -20.64286 -19.82067 -19.39623 -18.54589 -18.09180 -17.75185 -17.19968 -16.84322 -16.52600 -16.22086 -15.83849 -15.47605 -15.15752 -15.14569 -14.95525 -14.70174 -14.33923 -14.26631 -14.10872 -13.71350 -13.32917 -13.31847 -13.20449 -13.10320 -13.07006 -12.98509 -12.84377 -12.60458 -12.42033 -12.22824 -12.14049 -12.00943 -11.85841 -11.55087 -11.37548 -11.29029 -11.14781 -11.06256 -10.80024 -9.91499 -9.76910 -9.53890 -8.73501 -6.44908 -0.53659 0.42662 0.84969 1.35106 1.42991 1.50836 2.04683 2.17271 2.55602 2.76650 3.33616 3.38994 3.52147 3.78492 3.91414 3.93052 4.09268 4.29999 4.30736 4.40059 4.42324 4.51856 4.61326 4.67994 4.75958 4.79201 4.83441 4.87077 4.90904 4.92142 5.01589 5.06879 5.10160 5.13831 5.20420 5.33661 5.40081 5.41786 5.43500 5.57798 5.62908 5.75948 5.89195 5.94374 6.11737 6.53070 6.79923 6.85638 7.02754 8.24851 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.004781 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.752205 B = 5855.714989 C = 6819.705818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.097 4.097 3 H 0.113 0.887 4 C -0.095 4.095 5 C -0.110 4.110 6 H 0.057 0.943 7 C 0.082 3.918 8 O -0.600 6.600 9 C 0.129 3.871 10 N -0.987 5.987 11 S 2.702 3.298 12 O -0.985 6.985 13 O -0.998 6.998 14 C -0.633 4.633 15 C -0.136 4.136 16 C -0.120 4.120 17 C -0.138 4.138 18 C 0.065 3.935 19 C -0.498 4.498 20 H 0.074 0.926 21 C 0.037 3.963 22 N -0.825 5.825 23 Si 0.983 3.017 24 H -0.260 1.260 25 H -0.259 1.259 26 H -0.265 1.265 27 C -0.140 4.140 28 C 0.114 3.886 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.291 0.709 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.037 8.577 9.399 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.117 4.117 3 H 0.131 0.869 4 C -0.133 4.133 5 C -0.130 4.130 6 H 0.075 0.925 7 C 0.005 3.995 8 O -0.408 6.408 9 C 0.004 3.996 10 N -0.827 5.827 11 S 2.797 3.203 12 O -0.975 6.975 13 O -0.988 6.988 14 C -0.722 4.722 15 C -0.156 4.156 16 C -0.139 4.139 17 C -0.158 4.158 18 C 0.062 3.938 19 C -0.527 4.527 20 H 0.092 0.908 21 C -0.178 4.178 22 N -0.451 5.451 23 Si 0.803 3.197 24 H -0.183 1.183 25 H -0.183 1.183 26 H -0.190 1.190 27 C -0.161 4.161 28 C -0.010 4.010 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.244 0.756 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.947 8.356 7.974 18.108 hybrid contribution -1.510 -0.759 1.027 1.978 sum 12.437 7.597 9.001 17.129 Atomic orbital electron populations 1.22003 0.96317 1.01623 1.01648 1.21490 0.95082 1.00602 0.94492 0.86915 1.21459 1.01676 0.92225 0.97926 1.21613 1.01036 0.96592 0.93798 0.92498 1.22265 0.97244 0.83454 0.96587 1.86558 1.73598 1.29867 1.50821 1.21509 1.01376 0.93788 0.82885 1.57498 1.70186 1.21187 1.33787 1.01270 0.73605 0.72294 0.73118 1.93469 1.84927 1.72423 1.46694 1.93481 1.85428 1.33077 1.86863 1.30218 1.24199 1.04398 1.13362 1.20330 0.95059 0.97002 1.03241 1.21086 0.94438 0.99072 0.99334 1.21601 0.99865 0.93613 1.00686 1.17990 0.91759 0.92664 0.91368 1.19840 0.93370 1.17538 1.21956 0.90764 1.26752 0.98898 0.95174 0.96997 1.69831 1.12843 1.37266 1.25168 0.85150 0.77872 0.78421 0.78261 1.18309 1.18341 1.19017 1.20695 0.95937 0.97672 1.01834 1.21844 1.01877 0.77858 0.99379 0.92264 0.93051 0.94109 0.88990 0.90264 0.91056 0.92007 0.75550 0.88558 0.91646 0.85447 0.85675 0.87004 0.89783 0.88416 0.89812 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 8.48 71.98 0.61 -3.50 16 2 C -0.10 -1.81 3.21 -10.71 -0.03 -1.84 16 3 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.10 -1.54 4.71 30.62 0.14 -1.39 16 5 C -0.11 -2.57 2.23 -10.72 -0.02 -2.60 16 6 H 0.06 1.77 6.34 -2.39 -0.02 1.76 16 7 C 0.08 1.52 6.43 71.98 0.46 1.99 16 8 O -0.60 -14.46 13.31 -148.98 -1.98 -16.44 16 9 C 0.13 3.51 5.50 86.36 0.47 3.98 16 10 N -0.99 -29.22 2.73 -513.06 -1.40 -30.62 16 11 S 2.70 107.53 5.69 -56.49 -0.32 107.21 16 12 O -0.98 -40.60 15.98 -128.00 -2.05 -42.64 16 13 O -1.00 -45.70 15.98 -128.00 -2.04 -47.74 16 14 C -0.63 -28.71 5.04 22.22 0.11 -28.60 16 15 C -0.14 -5.85 9.15 22.46 0.21 -5.64 16 16 C -0.12 -5.41 10.02 22.22 0.22 -5.19 16 17 C -0.14 -7.15 8.70 22.73 0.20 -6.95 16 18 C 0.07 3.59 5.58 -21.29 -0.12 3.47 16 19 C -0.50 -27.42 9.06 23.46 0.21 -27.21 16 20 H 0.07 4.03 7.91 -2.91 -0.02 4.01 16 21 C 0.04 1.87 5.14 85.26 0.44 2.31 16 22 N -0.83 -43.01 10.95 21.83 0.24 -42.77 16 23 Si 0.98 38.44 29.59 68.60 2.03 40.47 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 26 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 27 C -0.14 -7.25 9.26 22.73 0.21 -7.04 16 28 C 0.11 2.53 5.77 86.36 0.50 3.03 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.35 8.09 -2.39 -0.02 1.33 16 31 H 0.04 1.34 4.91 -2.39 -0.01 1.33 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.39 5.46 9.12 -74.06 -0.68 4.78 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 2.22 6.97 -2.39 -0.02 2.20 16 39 H 0.13 4.82 7.60 -2.91 -0.02 4.80 16 40 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.11 5.96 6.15 -2.91 -0.02 5.94 16 42 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 43 H 0.10 5.12 7.60 -2.91 -0.02 5.10 16 44 H 0.08 1.99 7.13 -2.39 -0.02 1.98 16 45 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -72.43 367.14 -1.58 -74.01 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.33 Total: 33.70 kcal Atomic # 6 Polarization: -78.79 SS G_CDS: 3.61 Total: -75.18 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -1.16 Total: -73.39 kcal Atomic # 8 Polarization: -100.75 SS G_CDS: -6.07 Total: -106.83 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 16 Polarization: 107.53 SS G_CDS: -0.32 Total: 107.21 kcal Total: -72.43 -1.58 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591469329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.386 kcal (2) G-P(sol) polarization free energy of solvation -72.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds