Wall clock time and date at job start Tue Mar 31 2020 23:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.50167 * 2 1 4 4 C 1.53042 * 109.49866 * 239.90116 * 2 1 3 5 5 C 1.53036 * 109.53933 * 178.68184 * 4 2 1 6 6 H 1.08997 * 109.50145 * 301.41528 * 5 4 2 7 7 C 1.53001 * 109.49782 * 181.35249 * 5 4 2 8 8 O 1.42896 * 109.47547 * 175.00426 * 7 5 4 9 9 C 1.52761 * 109.38193 * 61.24768 * 5 4 2 10 10 N 1.46925 * 109.00468 * 305.58380 * 9 5 4 11 11 S 1.65605 * 120.62967 * 233.58558 * 10 9 5 12 12 O 1.42104 * 106.39985 * 156.18387 * 11 10 9 13 13 O 1.42104 * 106.40337 * 23.26264 * 11 10 9 14 14 C 1.76201 * 107.21672 * 269.71955 * 11 10 9 15 15 C 1.38652 * 119.87926 * 270.23045 * 14 11 10 16 16 C 1.38607 * 120.50298 * 180.23817 * 15 14 11 17 17 C 1.37639 * 120.25279 * 359.79142 * 16 15 14 18 18 C 1.40702 * 119.73831 * 359.97438 * 17 16 15 19 19 C 1.41394 * 120.24175 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99787 * 155.18071 * 19 18 17 21 21 C 1.39935 * 120.00265 * 335.18149 * 19 18 17 22 22 N 1.30825 * 120.00038 * 342.36236 * 21 19 18 23 23 Si 1.86803 * 120.00392 * 162.36390 * 21 19 18 24 24 H 1.48499 * 109.47224 * 89.99762 * 23 21 19 25 25 H 1.48506 * 109.47092 * 209.99972 * 23 21 19 26 26 H 1.48497 * 109.46942 * 329.99697 * 23 21 19 27 27 C 1.37601 * 119.87248 * 90.00292 * 14 11 10 28 28 C 1.46922 * 118.74168 * 53.31201 * 10 9 5 29 29 H 1.09005 * 109.47308 * 299.93256 * 1 2 3 30 30 H 1.08992 * 109.47340 * 59.93175 * 1 2 3 31 31 H 1.09000 * 109.47438 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46260 * 298.70743 * 4 2 1 33 33 H 1.09004 * 109.45736 * 58.67616 * 4 2 1 34 34 H 1.09003 * 109.46881 * 295.00446 * 7 5 4 35 35 H 1.08997 * 109.47571 * 55.00108 * 7 5 4 36 36 H 0.96697 * 114.00375 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.50945 * 185.70713 * 9 5 4 38 38 H 1.09000 * 109.43596 * 65.42133 * 9 5 4 39 39 H 1.08011 * 119.74823 * 0.02562 * 15 14 11 40 40 H 1.08000 * 119.87555 * 179.76865 * 16 15 14 41 41 H 1.07989 * 120.13438 * 179.97438 * 17 16 15 42 42 H 0.97002 * 120.00406 * 180.02562 * 22 21 19 43 43 H 1.07997 * 120.12754 * 0.02562 * 27 14 11 44 44 H 1.09007 * 109.58468 * 66.42494 * 28 10 9 45 45 H 1.09004 * 109.59044 * 186.71254 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5708 -0.6954 -1.2658 6 1 3.9159 0.3384 -1.2542 7 6 4.0797 -1.3894 -2.5309 8 8 5.5009 -1.2614 -2.6055 9 6 4.1054 -1.4217 -0.0329 10 7 3.5046 -0.8289 1.1697 11 16 4.4588 -0.2836 2.4085 12 8 3.6924 0.6876 3.1077 13 8 5.7327 -0.0080 1.8424 14 6 4.6894 -1.6305 3.5210 15 6 3.7957 -1.8266 4.5628 16 6 3.9675 -2.8790 5.4483 17 6 5.0273 -3.7446 5.2995 18 6 5.9377 -3.5581 4.2430 19 6 7.0304 -4.4406 4.0804 20 1 7.4811 -4.5684 3.1073 21 6 7.5278 -5.1484 5.1803 22 7 7.2359 -4.7595 6.3948 23 14 8.6086 -6.6487 4.9145 24 1 10.0319 -6.2292 4.8556 25 1 8.4192 -7.6007 6.0384 26 1 8.2339 -7.3088 3.6382 27 6 5.7530 -2.4864 3.3497 28 6 2.0413 -0.7235 1.2498 29 1 -0.3634 0.5128 0.8906 30 1 -0.3633 0.5148 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6967 -1.7576 -1.2348 33 1 1.6583 -0.2250 -2.1389 34 1 3.8111 -2.4453 -2.4990 35 1 3.6266 -0.9256 -3.4070 36 1 5.8932 -1.6794 -3.3842 37 1 5.1895 -1.3161 0.0103 38 1 3.8411 -2.4776 -0.0909 39 1 2.9613 -1.1522 4.6873 40 1 3.2674 -3.0201 6.2585 41 1 5.1595 -4.5636 5.9908 42 1 7.5810 -5.2499 7.1573 43 1 6.4461 -2.3337 2.5356 44 1 1.6052 -1.7214 1.2984 45 1 1.7637 -0.1595 2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591469330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:43 Heat of formation + Delta-G solvation = -122.161689 kcal Electronic energy + Delta-G solvation = -28180.855165 eV Core-core repulsion = 24289.108171 eV Total energy + Delta-G solvation = -3891.746994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.19324 -37.60841 -36.80632 -36.56496 -35.24590 -33.82228 -33.42654 -32.49251 -30.05382 -29.75778 -26.86940 -25.90405 -25.45697 -24.36746 -21.80668 -21.03657 -20.83682 -20.20771 -18.64508 -17.80148 -17.43463 -17.04585 -16.03367 -15.91540 -15.34313 -15.11188 -14.78928 -14.65022 -14.31491 -14.11518 -13.75883 -13.52734 -13.39221 -13.31925 -12.74909 -12.60755 -12.52851 -12.22939 -11.90906 -11.67686 -11.58031 -11.53883 -11.39976 -11.35850 -11.31010 -11.03828 -11.02454 -10.90410 -10.84917 -10.59446 -10.53737 -10.38984 -10.08838 -9.75978 -9.59712 -9.32537 -8.72538 -8.00218 -7.67646 -6.90184 -4.51227 1.00956 2.22917 2.65486 3.00896 3.03025 3.09440 3.49655 3.84466 4.02113 4.30203 4.44207 4.59770 4.65677 4.77440 4.85133 5.04694 5.10692 5.21653 5.27542 5.36227 5.43681 5.45581 5.51535 5.55798 5.66303 5.69543 5.81019 5.91466 5.97872 6.04934 6.05993 6.12521 6.19785 6.33404 6.36927 6.67666 6.72091 6.79130 6.96486 7.07201 7.24626 7.41183 7.53508 7.74454 7.82612 7.96511 8.42147 8.69130 8.74112 10.05634 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.003672 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.703023 B = 7623.259394 C = 8724.048076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.104 4.104 5 C -0.101 4.101 6 H 0.082 0.918 7 C 0.083 3.917 8 O -0.568 6.568 9 C 0.129 3.871 10 N -1.000 6.000 11 S 2.685 3.315 12 O -0.974 6.974 13 O -0.966 6.966 14 C -0.631 4.631 15 C -0.148 4.148 16 C -0.121 4.121 17 C -0.118 4.118 18 C 0.092 3.908 19 C -0.461 4.461 20 H 0.082 0.918 21 C 0.075 3.925 22 N -0.794 5.794 23 Si 0.911 3.089 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.260 1.260 27 C -0.125 4.125 28 C 0.123 3.877 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.378 0.622 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.124 0.876 42 H 0.283 0.717 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 2.707 -14.131 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.094 0.906 4 C -0.142 4.142 5 C -0.122 4.122 6 H 0.101 0.899 7 C 0.005 3.995 8 O -0.373 6.373 9 C 0.003 3.997 10 N -0.836 5.836 11 S 2.783 3.217 12 O -0.964 6.964 13 O -0.956 6.956 14 C -0.723 4.723 15 C -0.169 4.169 16 C -0.141 4.141 17 C -0.138 4.138 18 C 0.089 3.911 19 C -0.490 4.490 20 H 0.100 0.900 21 C -0.143 4.143 22 N -0.419 5.419 23 Si 0.735 3.265 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.146 4.146 28 C -0.003 4.003 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.225 0.775 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.149 3.842 -13.237 17.116 hybrid contribution 0.518 -1.733 -0.152 1.815 sum -9.631 2.108 -13.389 16.627 Atomic orbital electron populations 1.21769 0.94395 1.02088 1.02036 1.21450 0.95720 1.00264 0.94941 0.90561 1.21525 0.93782 1.01142 0.97750 1.21421 0.95505 1.01344 0.93897 0.89924 1.22162 0.81447 0.99042 0.96895 1.86566 1.20327 1.80907 1.49521 1.21304 0.99273 0.96451 0.82645 1.57781 1.15831 1.78525 1.31484 1.01843 0.72589 0.74555 0.72739 1.93489 1.71699 1.57990 1.73268 1.93528 1.40066 1.84138 1.77899 1.29833 1.06522 1.20810 1.15123 1.20066 0.99541 1.00305 0.96982 1.20805 0.98471 0.96385 0.98396 1.21626 0.92940 0.99330 0.99922 1.17680 0.92107 0.90384 0.90975 1.19592 1.12896 1.20551 0.95996 0.89952 1.25931 0.96101 0.97806 0.94457 1.69785 1.37227 1.35664 0.99270 0.86259 0.80182 0.80703 0.79344 1.19300 1.20017 1.18335 1.20756 0.96709 0.94825 1.02342 1.21478 0.79127 1.00876 0.98772 0.92171 0.92486 0.92400 0.91418 0.91690 0.93378 0.93584 0.77543 0.88027 0.91571 0.87722 0.88401 0.85790 0.90575 0.87083 0.91364 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.20 37.15 0.34 -0.83 16 2 C -0.10 -1.07 2.87 -90.50 -0.26 -1.33 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.10 -0.97 4.45 -26.69 -0.12 -1.09 16 5 C -0.10 -1.16 2.56 -90.72 -0.23 -1.40 16 6 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 7 C 0.08 0.78 6.43 37.16 0.24 1.02 16 8 O -0.57 -6.27 13.30 -35.23 -0.47 -6.74 16 9 C 0.13 1.84 5.57 -3.93 -0.02 1.82 16 10 N -1.00 -15.68 3.30 -113.76 -0.37 -16.05 16 11 S 2.68 53.60 5.73 -107.50 -0.62 52.99 16 12 O -0.97 -20.59 15.86 -57.17 -0.91 -21.50 16 13 O -0.97 -21.60 15.85 -57.17 -0.91 -22.51 16 14 C -0.63 -14.31 5.96 -39.66 -0.24 -14.54 16 15 C -0.15 -3.29 9.53 -39.29 -0.37 -3.67 16 16 C -0.12 -2.77 10.02 -39.66 -0.40 -3.17 16 17 C -0.12 -2.99 8.70 -38.87 -0.34 -3.33 16 18 C 0.09 2.42 5.57 -106.82 -0.60 1.82 16 19 C -0.46 -11.98 9.05 -37.75 -0.34 -12.32 16 20 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 21 C 0.08 1.84 5.14 -17.35 -0.09 1.75 16 22 N -0.79 -20.06 10.97 55.55 0.61 -19.45 16 23 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 C -0.13 -3.09 9.26 -38.87 -0.36 -3.45 16 28 C 0.12 1.59 5.76 -3.71 -0.02 1.56 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 2.32 9.12 45.56 0.42 2.74 16 37 H 0.10 1.67 6.75 -51.93 -0.35 1.32 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 2.10 7.61 -52.48 -0.40 1.70 16 40 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 41 H 0.12 3.17 6.18 -52.49 -0.32 2.84 16 42 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 43 H 0.11 2.65 7.60 -52.49 -0.40 2.25 16 44 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.09 1.25 6.92 -51.93 -0.36 0.89 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -32.21 373.99 -10.90 -43.11 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.04 Total: 8.52 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: -2.81 Total: -37.15 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.23 Total: -35.50 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -2.28 Total: -50.75 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 53.60 SS G_CDS: -0.62 Total: 52.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.21 -10.90 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591469330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.051 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds