Wall clock time and date at job start Tue Mar 31 2020 23:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.50167 * 2 1 4 4 C 1.53042 * 109.49866 * 239.90116 * 2 1 3 5 5 C 1.53036 * 109.53933 * 178.68184 * 4 2 1 6 6 H 1.08997 * 109.50145 * 301.41528 * 5 4 2 7 7 C 1.53001 * 109.49782 * 181.35249 * 5 4 2 8 8 O 1.42896 * 109.47547 * 175.00426 * 7 5 4 9 9 C 1.52761 * 109.38193 * 61.24768 * 5 4 2 10 10 N 1.46925 * 109.00468 * 305.58380 * 9 5 4 11 11 S 1.65605 * 120.62967 * 233.58558 * 10 9 5 12 12 O 1.42104 * 106.39985 * 156.18387 * 11 10 9 13 13 O 1.42104 * 106.40337 * 23.26264 * 11 10 9 14 14 C 1.76201 * 107.21672 * 269.71955 * 11 10 9 15 15 C 1.38652 * 119.87926 * 270.23045 * 14 11 10 16 16 C 1.38607 * 120.50298 * 180.23817 * 15 14 11 17 17 C 1.37639 * 120.25279 * 359.79142 * 16 15 14 18 18 C 1.40702 * 119.73831 * 359.97438 * 17 16 15 19 19 C 1.41394 * 120.24175 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99787 * 155.18071 * 19 18 17 21 21 C 1.39935 * 120.00265 * 335.18149 * 19 18 17 22 22 N 1.30825 * 120.00038 * 342.36236 * 21 19 18 23 23 Si 1.86803 * 120.00392 * 162.36390 * 21 19 18 24 24 H 1.48499 * 109.47224 * 89.99762 * 23 21 19 25 25 H 1.48506 * 109.47092 * 209.99972 * 23 21 19 26 26 H 1.48497 * 109.46942 * 329.99697 * 23 21 19 27 27 C 1.37601 * 119.87248 * 90.00292 * 14 11 10 28 28 C 1.46922 * 118.74168 * 53.31201 * 10 9 5 29 29 H 1.09005 * 109.47308 * 299.93256 * 1 2 3 30 30 H 1.08992 * 109.47340 * 59.93175 * 1 2 3 31 31 H 1.09000 * 109.47438 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46260 * 298.70743 * 4 2 1 33 33 H 1.09004 * 109.45736 * 58.67616 * 4 2 1 34 34 H 1.09003 * 109.46881 * 295.00446 * 7 5 4 35 35 H 1.08997 * 109.47571 * 55.00108 * 7 5 4 36 36 H 0.96697 * 114.00375 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.50945 * 185.70713 * 9 5 4 38 38 H 1.09000 * 109.43596 * 65.42133 * 9 5 4 39 39 H 1.08011 * 119.74823 * 0.02562 * 15 14 11 40 40 H 1.08000 * 119.87555 * 179.76865 * 16 15 14 41 41 H 1.07989 * 120.13438 * 179.97438 * 17 16 15 42 42 H 0.97002 * 120.00406 * 180.02562 * 22 21 19 43 43 H 1.07997 * 120.12754 * 0.02562 * 27 14 11 44 44 H 1.09007 * 109.58468 * 66.42494 * 28 10 9 45 45 H 1.09004 * 109.59044 * 186.71254 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5708 -0.6954 -1.2658 6 1 3.9159 0.3384 -1.2542 7 6 4.0797 -1.3894 -2.5309 8 8 5.5009 -1.2614 -2.6055 9 6 4.1054 -1.4217 -0.0329 10 7 3.5046 -0.8289 1.1697 11 16 4.4588 -0.2836 2.4085 12 8 3.6924 0.6876 3.1077 13 8 5.7327 -0.0080 1.8424 14 6 4.6894 -1.6305 3.5210 15 6 3.7957 -1.8266 4.5628 16 6 3.9675 -2.8790 5.4483 17 6 5.0273 -3.7446 5.2995 18 6 5.9377 -3.5581 4.2430 19 6 7.0304 -4.4406 4.0804 20 1 7.4811 -4.5684 3.1073 21 6 7.5278 -5.1484 5.1803 22 7 7.2359 -4.7595 6.3948 23 14 8.6086 -6.6487 4.9145 24 1 10.0319 -6.2292 4.8556 25 1 8.4192 -7.6007 6.0384 26 1 8.2339 -7.3088 3.6382 27 6 5.7530 -2.4864 3.3497 28 6 2.0413 -0.7235 1.2498 29 1 -0.3634 0.5128 0.8906 30 1 -0.3633 0.5148 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6967 -1.7576 -1.2348 33 1 1.6583 -0.2250 -2.1389 34 1 3.8111 -2.4453 -2.4990 35 1 3.6266 -0.9256 -3.4070 36 1 5.8932 -1.6794 -3.3842 37 1 5.1895 -1.3161 0.0103 38 1 3.8411 -2.4776 -0.0909 39 1 2.9613 -1.1522 4.6873 40 1 3.2674 -3.0201 6.2585 41 1 5.1595 -4.5636 5.9908 42 1 7.5810 -5.2499 7.1573 43 1 6.4461 -2.3337 2.5356 44 1 1.6052 -1.7214 1.2984 45 1 1.7637 -0.1595 2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591469330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:42 Heat of formation + Delta-G solvation = -144.762058 kcal Electronic energy + Delta-G solvation = -28181.835190 eV Core-core repulsion = 24289.108171 eV Total energy + Delta-G solvation = -3892.727020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.13584 -39.47201 -38.39738 -37.48627 -36.95640 -35.69053 -34.42881 -33.41441 -31.94373 -31.61217 -27.74510 -27.36207 -26.65394 -25.46847 -23.64104 -22.83406 -21.74166 -21.15484 -20.29477 -19.36076 -18.61088 -18.17194 -17.76284 -17.29250 -16.90972 -16.53806 -16.21498 -15.95992 -15.33997 -15.21931 -15.12537 -14.98765 -14.66061 -14.54060 -14.33561 -13.75582 -13.66068 -13.44066 -13.32555 -13.28904 -13.10835 -13.07700 -12.94429 -12.87535 -12.70945 -12.60502 -12.31800 -12.20981 -11.90930 -11.72670 -11.59403 -11.49496 -11.38611 -11.26145 -11.15186 -10.82734 -9.99569 -9.82539 -9.58757 -8.74773 -6.47576 -0.58563 0.37404 0.81646 1.36414 1.43818 1.52029 2.02168 2.17205 2.54214 2.72651 3.29309 3.33114 3.48199 3.76003 3.86076 3.92701 3.99226 4.27079 4.28435 4.34027 4.40105 4.46271 4.58359 4.65718 4.70508 4.74841 4.80486 4.86699 4.87435 4.89301 4.90754 5.02754 5.06974 5.15529 5.17974 5.27880 5.29225 5.38144 5.44527 5.52886 5.54341 5.67576 5.85260 5.90900 6.07993 6.49723 6.77317 6.82038 7.00888 8.23729 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.003672 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.703023 B = 7623.259394 C = 8724.048076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.064 0.936 4 C -0.098 4.098 5 C -0.101 4.101 6 H 0.063 0.937 7 C 0.083 3.917 8 O -0.599 6.599 9 C 0.122 3.878 10 N -0.991 5.991 11 S 2.705 3.295 12 O -0.985 6.985 13 O -0.995 6.995 14 C -0.638 4.638 15 C -0.149 4.149 16 C -0.121 4.121 17 C -0.140 4.140 18 C 0.064 3.936 19 C -0.499 4.499 20 H 0.080 0.920 21 C 0.036 3.964 22 N -0.824 5.824 23 Si 0.986 3.014 24 H -0.264 1.264 25 H -0.262 1.262 26 H -0.256 1.256 27 C -0.148 4.148 28 C 0.111 3.889 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.292 0.708 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 2.074 -15.672 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.083 0.917 4 C -0.135 4.135 5 C -0.121 4.121 6 H 0.082 0.918 7 C 0.005 3.995 8 O -0.408 6.408 9 C -0.003 4.003 10 N -0.830 5.830 11 S 2.801 3.199 12 O -0.975 6.975 13 O -0.985 6.985 14 C -0.727 4.727 15 C -0.170 4.170 16 C -0.140 4.140 17 C -0.160 4.160 18 C 0.061 3.939 19 C -0.528 4.528 20 H 0.098 0.902 21 C -0.179 4.179 22 N -0.450 5.450 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.186 1.186 26 H -0.179 1.179 27 C -0.169 4.169 28 C -0.013 4.013 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.246 0.754 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.133 0.867 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.056 3.199 -14.759 19.323 hybrid contribution 1.030 -1.435 0.289 1.790 sum -11.025 1.764 -14.470 18.277 Atomic orbital electron populations 1.21741 0.92219 1.03037 1.02778 1.21466 0.97383 0.99338 0.94076 0.91711 1.21527 0.91701 1.02214 0.98100 1.21456 0.97328 0.99982 0.93359 0.91844 1.22245 0.80801 0.99926 0.96548 1.86520 1.21564 1.81546 1.51149 1.21480 0.97844 0.97687 0.83276 1.57504 1.16895 1.78392 1.30247 1.01155 0.72247 0.73784 0.72714 1.93463 1.71723 1.58158 1.74169 1.93486 1.42332 1.84443 1.78248 1.30316 1.05641 1.20815 1.15961 1.20452 0.99944 1.00315 0.96272 1.21155 0.98113 0.95682 0.99077 1.21646 0.94053 1.00186 1.00074 1.18042 0.92846 0.91130 0.91885 1.19867 1.13896 1.22307 0.96693 0.90193 1.26800 0.97204 1.00215 0.93694 1.69822 1.38162 1.36866 1.00153 0.85151 0.78018 0.76665 0.79604 1.18843 1.18644 1.17945 1.20794 0.97858 0.95609 1.02604 1.21855 0.76999 1.02317 1.00164 0.92404 0.90860 0.91330 0.89946 0.89148 0.91884 0.90926 0.75350 0.90942 0.90227 0.85119 0.85272 0.86715 0.89668 0.87688 0.89601 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 71.98 0.66 -1.14 16 2 C -0.10 -1.87 2.87 -10.72 -0.03 -1.90 16 3 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.10 -1.50 4.45 30.62 0.14 -1.36 16 5 C -0.10 -2.16 2.56 -10.86 -0.03 -2.19 16 6 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 7 C 0.08 1.37 6.43 71.98 0.46 1.83 16 8 O -0.60 -12.73 13.30 -148.98 -1.98 -14.71 16 9 C 0.12 3.46 5.57 86.22 0.48 3.94 16 10 N -0.99 -30.76 3.30 -513.83 -1.69 -32.46 16 11 S 2.71 109.78 5.73 -56.49 -0.32 109.46 16 12 O -0.98 -41.51 15.86 -128.00 -2.03 -43.55 16 13 O -0.99 -46.22 15.85 -128.00 -2.03 -48.25 16 14 C -0.64 -29.51 5.96 22.22 0.13 -29.37 16 15 C -0.15 -6.59 9.53 22.46 0.21 -6.38 16 16 C -0.12 -5.52 10.02 22.22 0.22 -5.30 16 17 C -0.14 -7.25 8.70 22.73 0.20 -7.05 16 18 C 0.06 3.51 5.57 -21.29 -0.12 3.40 16 19 C -0.50 -26.97 9.05 23.46 0.21 -26.76 16 20 H 0.08 4.17 7.91 -2.91 -0.02 4.15 16 21 C 0.04 1.81 5.14 85.25 0.44 2.25 16 22 N -0.82 -42.49 10.97 21.82 0.24 -42.25 16 23 Si 0.99 37.50 29.59 68.60 2.03 39.53 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 25 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 26 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 27 C -0.15 -7.62 9.26 22.73 0.21 -7.41 16 28 C 0.11 2.68 5.76 86.37 0.50 3.18 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.40 4.44 9.12 -74.06 -0.68 3.76 16 37 H 0.07 2.49 6.75 -2.38 -0.02 2.47 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.13 5.03 7.61 -2.91 -0.02 5.00 16 40 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 41 H 0.12 6.06 6.18 -2.92 -0.02 6.04 16 42 H 0.29 13.49 8.30 -92.71 -0.77 12.73 16 43 H 0.11 5.36 7.60 -2.91 -0.02 5.34 16 44 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.09 2.21 6.92 -2.38 -0.02 2.19 16 Total: -1.00 -72.08 373.99 -1.78 -73.86 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.32 Total: 32.63 kcal Atomic # 6 Polarization: -77.96 SS G_CDS: 3.69 Total: -74.27 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -1.45 Total: -74.70 kcal Atomic # 8 Polarization: -100.47 SS G_CDS: -6.04 Total: -106.51 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Atomic # 16 Polarization: 109.78 SS G_CDS: -0.32 Total: 109.46 kcal Total: -72.08 -1.78 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591469330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.901 kcal (2) G-P(sol) polarization free energy of solvation -72.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds