Wall clock time and date at job start Tue Mar 31 2020 23:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.49574 * 2 1 4 4 C 1.53040 * 109.49912 * 239.93670 * 2 1 3 5 5 C 1.53039 * 109.53990 * 301.38588 * 4 2 1 6 6 H 1.09001 * 109.50058 * 58.61318 * 5 4 2 7 7 C 1.52992 * 109.50023 * 178.68572 * 5 4 2 8 8 O 1.42901 * 109.47251 * 184.93168 * 7 5 4 9 9 C 1.53198 * 109.33252 * 298.64858 * 5 4 2 10 10 N 1.46930 * 108.77305 * 54.58912 * 9 5 4 11 11 S 1.65603 * 120.60494 * 126.41943 * 10 9 5 12 12 O 1.42089 * 106.40348 * 23.56027 * 11 10 9 13 13 O 1.42097 * 106.40040 * 156.48290 * 11 10 9 14 14 C 1.76199 * 107.21714 * 270.01925 * 11 10 9 15 15 C 1.38658 * 119.87760 * 269.72720 * 14 11 10 16 16 C 1.38620 * 120.50364 * 179.72018 * 15 14 11 17 17 C 1.37646 * 120.24098 * 0.55569 * 16 15 14 18 18 C 1.40693 * 119.74907 * 359.72278 * 17 16 15 19 19 C 1.41387 * 120.24572 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00481 * 155.23407 * 19 18 17 21 21 C 1.39949 * 119.99926 * 335.22867 * 19 18 17 22 22 N 1.30821 * 120.00473 * 342.31095 * 21 19 18 23 23 Si 1.86803 * 119.99996 * 162.30227 * 21 19 18 24 24 H 1.48507 * 109.47252 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47214 * 120.00332 * 23 21 19 26 26 H 1.48496 * 109.47540 * 240.00367 * 23 21 19 27 27 C 1.37601 * 119.87342 * 89.99995 * 14 11 10 28 28 C 1.46922 * 118.76357 * 306.43970 * 10 9 5 29 29 H 1.09002 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47413 * 300.06561 * 1 2 3 31 31 H 1.09003 * 109.46871 * 60.06486 * 1 2 3 32 32 H 1.09002 * 109.45994 * 181.36204 * 4 2 1 33 33 H 1.09000 * 109.44679 * 61.39672 * 4 2 1 34 34 H 1.09005 * 109.47467 * 64.93161 * 7 5 4 35 35 H 1.09001 * 109.47153 * 304.93293 * 7 5 4 36 36 H 0.96703 * 114.00155 * 179.97438 * 8 7 5 37 37 H 1.09005 * 109.58156 * 174.40786 * 9 5 4 38 38 H 1.08991 * 109.58695 * 294.82683 * 9 5 4 39 39 H 1.08003 * 119.74877 * 359.97438 * 15 14 11 40 40 H 1.07994 * 119.87974 * 180.28024 * 16 15 14 41 41 H 1.08005 * 120.12019 * 179.74523 * 17 16 15 42 42 H 0.96998 * 120.00368 * 179.97438 * 22 21 19 43 43 H 1.07994 * 120.13176 * 359.97438 * 27 14 11 44 44 H 1.09001 * 109.58775 * 293.79775 * 28 10 9 45 45 H 1.09001 * 109.58757 * 173.37838 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2486 5 6 1.5036 -2.1556 -1.2664 6 1 0.4139 -2.1358 -1.2547 7 6 1.9880 -2.8669 -2.5313 8 8 1.3941 -4.1646 -2.6052 9 6 2.0147 -2.9042 -0.0313 10 7 1.6528 -2.1382 1.1692 11 16 0.8214 -2.8561 2.4085 12 8 1.0775 -4.2502 2.3090 13 8 1.1038 -2.0953 3.5749 14 6 -0.8959 -2.6409 2.0779 15 6 -1.5577 -1.5228 2.5621 16 6 -2.9072 -1.3376 2.3049 17 6 -3.6080 -2.2701 1.5740 18 6 -2.9481 -3.4113 1.0826 19 6 -3.6578 -4.3760 0.3311 20 1 -3.1318 -5.0116 -0.3659 21 6 -5.0420 -4.5075 0.4906 22 7 -5.6289 -4.0089 1.5481 23 14 -6.0515 -5.3949 -0.8066 24 1 -5.1568 -5.8628 -1.8957 25 1 -6.7330 -6.5618 -0.1908 26 1 -7.0672 -4.4663 -1.3644 27 6 -1.5765 -3.5860 1.3450 28 6 2.0419 -0.7238 1.2493 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 3.1306 -0.7435 -1.2358 33 1 1.6981 -0.1954 -2.1388 34 1 3.0732 -2.9653 -2.4999 35 1 1.7011 -2.2856 -3.4075 36 1 1.6568 -4.6736 -3.3843 37 1 1.5561 -3.8921 0.0129 38 1 3.0985 -3.0045 -0.0873 39 1 -1.0167 -0.7886 3.1406 40 1 -3.4116 -0.4608 2.6831 41 1 -4.6603 -2.1258 1.3783 42 1 -6.5883 -4.0997 1.6584 43 1 -1.0600 -4.4581 0.9722 44 1 3.1281 -0.6457 1.2976 45 1 1.6014 -0.2734 2.1388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591469331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:46 Heat of formation + Delta-G solvation = -117.205757 kcal Electronic energy + Delta-G solvation = -29201.187780 eV Core-core repulsion = 25309.655692 eV Total energy + Delta-G solvation = -3891.532089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.30357 -37.59209 -36.76809 -36.51032 -35.25392 -33.80234 -33.02251 -32.20519 -30.02555 -29.74604 -26.85720 -25.82280 -25.41665 -24.38424 -21.80327 -21.52252 -20.91640 -19.34737 -18.39909 -17.92259 -17.23347 -17.03178 -15.93320 -15.88775 -15.19811 -15.07813 -14.83177 -14.60509 -14.22061 -14.05288 -13.70781 -13.48112 -13.35579 -13.22299 -13.07455 -12.54882 -12.22522 -11.90651 -11.77850 -11.66679 -11.53368 -11.37084 -11.32366 -11.28636 -11.13541 -11.07346 -10.99726 -10.84052 -10.81400 -10.54917 -10.45064 -10.11685 -10.00442 -9.70598 -9.54055 -9.30970 -8.68624 -7.96843 -7.63956 -6.87866 -4.48018 1.02912 2.25549 2.67142 3.02917 3.07131 3.09980 3.50401 3.86859 4.15118 4.31689 4.46582 4.68955 4.76493 4.86633 4.93940 5.08573 5.19804 5.34112 5.40775 5.45297 5.49177 5.54373 5.61213 5.72043 5.75984 5.87434 5.97534 6.04230 6.08587 6.18575 6.20757 6.22953 6.35593 6.44708 6.69094 6.71744 6.76316 6.82214 6.99080 7.09903 7.27065 7.44272 7.63893 7.77204 7.86459 7.99504 8.45825 8.72233 8.77384 10.07922 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011542 B = 0.004779 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.364621 B = 5858.026714 C = 6821.039380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.103 4.103 3 H 0.078 0.922 4 C -0.102 4.102 5 C -0.109 4.109 6 H 0.095 0.905 7 C 0.083 3.917 8 O -0.566 6.566 9 C 0.134 3.866 10 N -0.998 5.998 11 S 2.683 3.317 12 O -0.969 6.969 13 O -0.975 6.975 14 C -0.630 4.630 15 C -0.142 4.142 16 C -0.121 4.121 17 C -0.118 4.118 18 C 0.093 3.907 19 C -0.459 4.459 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.795 5.795 23 Si 0.909 3.091 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.272 1.272 27 C -0.120 4.120 28 C 0.127 3.873 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.377 0.623 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.282 0.718 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.134 6.737 -8.199 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.139 4.139 5 C -0.129 4.129 6 H 0.113 0.887 7 C 0.005 3.995 8 O -0.371 6.371 9 C 0.009 3.991 10 N -0.834 5.834 11 S 2.781 3.219 12 O -0.959 6.959 13 O -0.965 6.965 14 C -0.722 4.722 15 C -0.163 4.163 16 C -0.140 4.140 17 C -0.137 4.137 18 C 0.089 3.911 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.421 5.421 23 Si 0.734 3.266 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.142 4.142 28 C 0.001 3.999 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.223 0.777 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.141 0.859 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.066 6.506 -6.774 15.290 hybrid contribution -1.045 -0.264 -1.435 1.795 sum 11.021 6.242 -8.209 15.093 Atomic orbital electron populations 1.21999 0.93877 1.03845 1.01584 1.21461 0.97296 0.98807 0.94744 0.90328 1.21448 1.00101 0.94418 0.97979 1.21612 1.03186 0.94542 0.93597 0.88693 1.22161 0.95919 0.84192 0.97242 1.86593 1.72729 1.28536 1.49248 1.21339 0.99860 0.95073 0.82823 1.57802 1.71665 1.19633 1.34327 1.01902 0.74575 0.72886 0.72562 1.93521 1.85486 1.30816 1.86122 1.93493 1.85231 1.72405 1.45401 1.29769 1.22122 1.05303 1.14969 1.20005 0.95240 0.97018 1.04074 1.20774 0.94030 0.98814 1.00411 1.21608 1.00079 0.92882 0.99172 1.17661 0.90829 0.91930 0.90676 1.19638 0.92027 1.16566 1.20622 0.89919 1.25924 0.98531 0.94652 0.95176 1.69792 1.12146 1.36416 1.23698 0.86233 0.79648 0.79414 0.81338 1.18216 1.19884 1.19684 1.20743 0.96089 0.97026 1.00310 1.21428 0.99762 0.80000 0.98684 0.90741 0.92353 0.93051 0.91901 0.91743 0.93821 0.93634 0.77702 0.88375 0.91737 0.87908 0.88606 0.85936 0.90700 0.87193 0.91466 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.51 37.16 0.32 -1.78 16 2 C -0.10 -1.13 3.21 -90.50 -0.29 -1.42 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.10 -1.01 4.71 -26.69 -0.13 -1.14 16 5 C -0.11 -1.35 2.23 -90.50 -0.20 -1.55 16 6 H 0.09 1.43 6.34 -51.93 -0.33 1.10 16 7 C 0.08 0.86 6.43 37.15 0.24 1.09 16 8 O -0.57 -6.86 13.31 -35.23 -0.47 -7.33 16 9 C 0.13 1.89 5.50 -3.71 -0.02 1.87 16 10 N -1.00 -15.31 2.73 -113.52 -0.31 -15.62 16 11 S 2.68 52.92 5.68 -107.50 -0.61 52.31 16 12 O -0.97 -21.49 15.98 -57.18 -0.91 -22.41 16 13 O -0.97 -20.48 15.97 -57.18 -0.91 -21.39 16 14 C -0.63 -13.84 5.04 -39.66 -0.20 -14.04 16 15 C -0.14 -3.05 9.21 -39.29 -0.36 -3.42 16 16 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 17 C -0.12 -2.92 8.69 -38.87 -0.34 -3.26 16 18 C 0.09 2.40 5.57 -106.83 -0.60 1.80 16 19 C -0.46 -11.92 9.05 -37.74 -0.34 -12.26 16 20 H 0.08 2.08 7.91 -52.48 -0.41 1.67 16 21 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 22 N -0.80 -20.09 10.97 55.55 0.61 -19.48 16 23 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 C -0.12 -2.92 9.26 -38.87 -0.36 -3.28 16 28 C 0.13 1.60 5.77 -3.71 -0.02 1.57 16 29 H 0.07 1.21 4.92 -51.93 -0.26 0.95 16 30 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.70 9.12 45.56 0.42 3.12 16 37 H 0.10 1.60 6.97 -51.93 -0.36 1.24 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 2.01 7.59 -52.48 -0.40 1.61 16 40 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 41 H 0.12 3.12 6.18 -52.48 -0.32 2.79 16 42 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 43 H 0.11 2.63 7.60 -52.49 -0.40 2.23 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.19 7.13 -51.93 -0.37 0.82 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -31.52 367.27 -10.69 -42.21 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.80 Total: 10.01 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: -2.79 Total: -37.15 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.30 Total: -35.10 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -2.30 Total: -51.12 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: 52.92 SS G_CDS: -0.61 Total: 52.31 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.52 -10.69 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591469331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.991 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds