Wall clock time and date at job start Tue Mar 31 2020 22:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35897 * 116.99760 * 2 1 4 4 C 1.38764 * 120.05489 * 0.30443 * 3 2 1 5 5 C 1.38125 * 119.93952 * 180.20771 * 4 3 2 6 6 C 1.38288 * 120.05926 * 359.50760 * 5 4 3 7 7 C 1.38243 * 120.10980 * 0.23635 * 6 5 4 8 8 S 1.76198 * 119.97285 * 180.02562 * 7 6 5 9 9 O 1.42100 * 102.99986 * 336.14973 * 8 7 6 10 10 C 1.81402 * 103.00092 * 90.00096 * 8 7 6 11 11 C 1.50695 * 109.47445 * 180.02562 * 10 8 7 12 12 O 1.21283 * 119.99935 * 354.79740 * 11 10 8 13 13 N 1.34771 * 120.00038 * 174.79308 * 11 10 8 14 14 C 1.46510 * 120.00042 * 185.40267 * 13 11 10 15 15 C 1.50700 * 109.46889 * 90.00339 * 14 13 11 16 16 H 1.08001 * 120.00134 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99936 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99791 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99850 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47532 * 89.99940 * 19 17 15 21 21 H 1.48504 * 109.47160 * 209.99742 * 19 17 15 22 22 H 1.48506 * 109.47299 * 329.99941 * 19 17 15 23 23 C 1.46502 * 120.00210 * 5.40548 * 13 11 10 24 24 C 1.53000 * 109.47058 * 124.22865 * 23 13 11 25 25 C 1.53001 * 109.47213 * 244.23034 * 23 13 11 26 26 C 1.38171 * 120.05915 * 359.97438 * 7 6 5 27 27 H 1.08998 * 109.47039 * 60.00046 * 1 2 3 28 28 H 1.09007 * 109.46728 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47173 * 299.99804 * 1 2 3 30 30 H 1.07996 * 120.02521 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.96612 * 179.79000 * 5 4 3 32 32 H 1.07998 * 119.94424 * 180.25922 * 6 5 4 33 33 H 1.09007 * 109.47002 * 300.00537 * 10 8 7 34 34 H 1.09007 * 109.47114 * 59.99972 * 10 8 7 35 35 H 1.08999 * 109.46969 * 210.00255 * 14 13 11 36 36 H 1.08995 * 109.47170 * 330.00167 * 14 13 11 37 37 H 0.97003 * 119.99464 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.47203 * 4.23283 * 23 13 11 39 39 H 1.09001 * 109.47275 * 55.65779 * 24 23 13 40 40 H 1.09002 * 109.46822 * 175.65221 * 24 23 13 41 41 H 1.08997 * 109.47578 * 295.65007 * 24 23 13 42 42 H 1.08998 * 109.47017 * 64.57596 * 25 23 13 43 43 H 1.08998 * 109.46974 * 184.57753 * 25 23 13 44 44 H 1.09002 * 109.46886 * 304.57607 * 25 23 13 45 45 H 1.07995 * 120.02959 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0064 5 6 1.9208 3.6048 0.0020 6 6 3.3018 3.6759 0.0016 7 6 4.0559 2.5173 0.0006 8 16 5.8153 2.6121 0.0008 9 8 6.0664 3.8943 -0.5580 10 6 6.2228 2.6324 1.7683 11 6 7.7179 2.7135 1.9383 12 8 8.4425 2.6584 0.9673 13 7 8.2499 2.8472 3.1694 14 6 9.6931 3.0449 3.3263 15 6 10.0031 4.5195 3.3071 16 1 9.2051 5.2376 3.1894 17 6 11.3057 4.9519 3.4388 18 7 11.5763 6.2388 3.4216 19 14 12.6862 3.7097 3.6402 20 1 13.2094 3.3299 2.3034 21 1 13.7788 4.3104 4.4470 22 1 12.1680 2.5013 4.3305 23 6 7.3850 2.7949 4.3507 24 6 7.8855 1.7055 5.3013 25 6 7.4146 4.1478 5.0648 26 6 3.4311 1.2849 0.0006 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2128 2.3203 0.0109 31 1 1.3338 4.5114 0.0036 32 1 3.7921 4.6382 0.0024 33 1 5.7564 3.4982 2.2387 34 1 5.8523 1.7207 2.2371 35 1 10.0172 2.6177 4.2752 36 1 10.2183 2.5525 2.5079 37 1 12.4928 6.5429 3.5139 38 1 6.3640 2.5683 4.0438 39 1 8.9312 1.8902 5.5473 40 1 7.2898 1.7181 6.2141 41 1 7.7919 0.7321 4.8198 42 1 6.9825 4.9102 4.4166 43 1 6.8367 4.0846 5.9868 44 1 8.4457 4.4122 5.2996 45 1 4.0207 0.3801 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591758248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:13 Heat of formation + Delta-G solvation = -74.822355 kcal Electronic energy + Delta-G solvation = -27206.786098 eV Core-core repulsion = 23317.091891 eV Total energy + Delta-G solvation = -3889.694206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.33706 -39.30306 -37.62835 -36.15192 -35.61024 -32.77822 -31.50586 -31.05353 -30.46763 -30.13917 -27.64968 -27.31233 -26.79034 -23.16135 -22.58035 -22.35473 -21.42900 -19.06973 -18.19696 -17.15295 -16.93264 -16.83955 -16.50771 -16.27017 -16.09827 -15.54617 -15.22575 -15.00449 -14.33499 -14.21945 -13.91188 -13.86252 -13.60401 -13.35291 -13.04742 -12.95176 -12.63107 -12.52079 -12.36310 -12.03143 -11.88920 -11.71597 -11.66620 -11.50220 -11.42563 -11.35129 -10.98903 -10.89304 -10.54438 -10.36970 -10.19165 -10.08802 -9.52315 -9.45699 -9.19885 -8.55804 -8.54072 -8.29805 -7.76014 -6.05758 -4.03969 0.64162 1.16130 1.77642 2.72586 2.97844 3.19648 3.30293 3.36099 3.38411 3.43627 3.78379 4.01543 4.41403 4.44951 4.62237 4.72227 4.74533 4.86180 5.01499 5.07758 5.14522 5.17066 5.19154 5.26901 5.30384 5.48417 5.57958 5.59101 5.63733 5.92653 5.94673 6.06345 6.06716 6.11934 6.20170 6.27980 6.35730 6.48532 6.74704 6.95670 6.99789 7.05221 7.31296 7.62873 8.18399 8.48391 8.82135 8.99233 9.53866 11.07416 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.002792 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.575543 B =10025.015597 C =10459.083246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.106 3.894 4 C -0.178 4.178 5 C -0.097 4.097 6 C -0.090 4.090 7 C -0.435 4.435 8 S 1.387 4.613 9 O -0.827 6.827 10 C -0.492 4.492 11 C 0.538 3.462 12 O -0.543 6.543 13 N -0.580 5.580 14 C 0.212 3.788 15 C -0.526 4.526 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.266 1.266 23 C 0.132 3.868 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.073 4.073 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.264 0.736 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.924 -15.272 -2.243 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.060 3.940 4 C -0.196 4.196 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.529 4.529 8 S 1.579 4.421 9 O -0.822 6.822 10 C -0.629 4.629 11 C 0.324 3.676 12 O -0.422 6.422 13 N -0.311 5.311 14 C 0.092 3.908 15 C -0.564 4.564 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.191 1.191 23 C 0.028 3.972 24 C -0.221 4.221 25 C -0.221 4.221 26 C -0.093 4.093 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.157 0.843 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.696 -15.299 -3.470 26.773 hybrid contribution -0.808 1.597 1.397 2.270 sum -22.503 -13.703 -2.072 26.428 Atomic orbital electron populations 1.23060 0.78460 1.04037 1.01276 1.86082 1.21293 1.26619 1.88940 1.19121 0.92637 0.84188 0.98016 1.21391 1.00033 0.92580 1.05644 1.21068 0.94769 0.97166 0.98598 1.21153 0.93957 0.98421 0.97377 1.28289 1.21220 0.96039 1.07381 1.70442 0.79451 1.07900 0.84337 1.93111 1.78541 1.43250 1.67342 1.28206 1.01070 1.09066 1.24557 1.19247 0.87399 0.77107 0.83890 1.90701 1.61937 1.51410 1.38170 1.47936 1.09720 1.69167 1.04301 1.19716 0.75798 0.98074 0.97235 1.21339 0.94420 0.90347 1.50317 0.90612 1.24865 0.98427 0.95103 0.94683 1.69903 1.19873 1.13521 1.50197 0.86877 0.82344 0.81805 0.78821 1.19856 1.21178 1.19050 1.21059 0.93645 0.96111 0.86395 1.22168 1.02899 0.98113 0.98892 1.22207 1.04748 0.96180 0.98955 1.20100 0.91150 0.97269 1.00746 0.92717 0.88101 0.92709 0.85356 0.85593 0.85190 0.86860 0.84323 0.94786 0.94273 0.92602 0.90311 0.91311 0.91954 0.92676 0.92973 0.93121 0.89412 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.77 10.50 -19.42 -0.20 -2.98 16 3 C 0.11 1.05 6.69 -39.21 -0.26 0.78 16 4 C -0.18 -1.64 9.04 -39.43 -0.36 -2.00 16 5 C -0.10 -1.01 10.04 -39.60 -0.40 -1.41 16 6 C -0.09 -1.15 9.44 -39.56 -0.37 -1.53 16 7 C -0.44 -5.15 5.61 -39.60 -0.22 -5.38 16 8 S 1.39 18.98 12.69 -107.50 -1.36 17.62 16 9 O -0.83 -16.86 16.89 -35.23 -0.60 -17.45 16 10 C -0.49 -6.98 4.70 36.00 0.17 -6.81 16 11 C 0.54 10.76 7.67 -10.99 -0.08 10.68 16 12 O -0.54 -12.85 15.43 5.55 0.09 -12.76 16 13 N -0.58 -11.78 2.39 -167.47 -0.40 -12.18 16 14 C 0.21 5.11 3.80 -5.19 -0.02 5.09 16 15 C -0.53 -15.00 8.27 -34.44 -0.28 -15.29 16 16 H 0.08 2.40 7.84 -52.49 -0.41 1.99 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 19 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 23 C 0.13 2.09 3.12 -67.93 -0.21 1.88 16 24 C -0.16 -2.20 9.19 37.16 0.34 -1.86 16 25 C -0.16 -2.78 8.74 37.16 0.32 -2.45 16 26 C -0.07 -0.71 9.69 -39.43 -0.38 -1.10 16 27 H 0.05 0.23 7.67 -51.93 -0.40 -0.16 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.23 7.65 -51.93 -0.40 -0.16 16 30 H 0.13 0.85 6.30 -52.49 -0.33 0.51 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.86 7.45 -52.49 -0.39 1.47 16 33 H 0.11 1.64 7.85 -51.92 -0.41 1.23 16 34 H 0.14 1.33 7.73 -51.92 -0.40 0.93 16 35 H 0.03 0.78 5.19 -51.93 -0.27 0.51 16 36 H 0.04 1.00 6.78 -51.93 -0.35 0.65 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.08 1.02 5.85 -51.93 -0.30 0.71 16 39 H 0.07 1.06 6.35 -51.93 -0.33 0.73 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.79 6.60 -51.93 -0.34 1.44 16 45 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -39.63 379.75 -7.98 -47.61 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.46 Total: 0.91 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.87 Total: -16.26 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.37 Total: -39.28 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.71 Total: -33.19 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 18.98 SS G_CDS: -1.36 Total: 17.62 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.63 -7.98 -47.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591758248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.215 kcal (2) G-P(sol) polarization free energy of solvation -39.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds