Wall clock time and date at job start Tue Mar 31 2020 22:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35897 * 116.99760 * 2 1 4 4 C 1.38764 * 120.05489 * 0.30443 * 3 2 1 5 5 C 1.38125 * 119.93952 * 180.20771 * 4 3 2 6 6 C 1.38288 * 120.05926 * 359.50760 * 5 4 3 7 7 C 1.38243 * 120.10980 * 0.23635 * 6 5 4 8 8 S 1.76198 * 119.97285 * 180.02562 * 7 6 5 9 9 O 1.42100 * 102.99986 * 336.14973 * 8 7 6 10 10 C 1.81402 * 103.00092 * 90.00096 * 8 7 6 11 11 C 1.50695 * 109.47445 * 180.02562 * 10 8 7 12 12 O 1.21283 * 119.99935 * 354.79740 * 11 10 8 13 13 N 1.34771 * 120.00038 * 174.79308 * 11 10 8 14 14 C 1.46510 * 120.00042 * 185.40267 * 13 11 10 15 15 C 1.50700 * 109.46889 * 90.00339 * 14 13 11 16 16 H 1.08001 * 120.00134 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99936 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99791 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99850 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47532 * 89.99940 * 19 17 15 21 21 H 1.48504 * 109.47160 * 209.99742 * 19 17 15 22 22 H 1.48506 * 109.47299 * 329.99941 * 19 17 15 23 23 C 1.46502 * 120.00210 * 5.40548 * 13 11 10 24 24 C 1.53000 * 109.47058 * 124.22865 * 23 13 11 25 25 C 1.53001 * 109.47213 * 244.23034 * 23 13 11 26 26 C 1.38171 * 120.05915 * 359.97438 * 7 6 5 27 27 H 1.08998 * 109.47039 * 60.00046 * 1 2 3 28 28 H 1.09007 * 109.46728 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47173 * 299.99804 * 1 2 3 30 30 H 1.07996 * 120.02521 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.96612 * 179.79000 * 5 4 3 32 32 H 1.07998 * 119.94424 * 180.25922 * 6 5 4 33 33 H 1.09007 * 109.47002 * 300.00537 * 10 8 7 34 34 H 1.09007 * 109.47114 * 59.99972 * 10 8 7 35 35 H 1.08999 * 109.46969 * 210.00255 * 14 13 11 36 36 H 1.08995 * 109.47170 * 330.00167 * 14 13 11 37 37 H 0.97003 * 119.99464 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.47203 * 4.23283 * 23 13 11 39 39 H 1.09001 * 109.47275 * 55.65779 * 24 23 13 40 40 H 1.09002 * 109.46822 * 175.65221 * 24 23 13 41 41 H 1.08997 * 109.47578 * 295.65007 * 24 23 13 42 42 H 1.08998 * 109.47017 * 64.57596 * 25 23 13 43 43 H 1.08998 * 109.46974 * 184.57753 * 25 23 13 44 44 H 1.09002 * 109.46886 * 304.57607 * 25 23 13 45 45 H 1.07995 * 120.02959 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0064 5 6 1.9208 3.6048 0.0020 6 6 3.3018 3.6759 0.0016 7 6 4.0559 2.5173 0.0006 8 16 5.8153 2.6121 0.0008 9 8 6.0664 3.8943 -0.5580 10 6 6.2228 2.6324 1.7683 11 6 7.7179 2.7135 1.9383 12 8 8.4425 2.6584 0.9673 13 7 8.2499 2.8472 3.1694 14 6 9.6931 3.0449 3.3263 15 6 10.0031 4.5195 3.3071 16 1 9.2051 5.2376 3.1894 17 6 11.3057 4.9519 3.4388 18 7 11.5763 6.2388 3.4216 19 14 12.6862 3.7097 3.6402 20 1 13.2094 3.3299 2.3034 21 1 13.7788 4.3104 4.4470 22 1 12.1680 2.5013 4.3305 23 6 7.3850 2.7949 4.3507 24 6 7.8855 1.7055 5.3013 25 6 7.4146 4.1478 5.0648 26 6 3.4311 1.2849 0.0006 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2128 2.3203 0.0109 31 1 1.3338 4.5114 0.0036 32 1 3.7921 4.6382 0.0024 33 1 5.7564 3.4982 2.2387 34 1 5.8523 1.7207 2.2371 35 1 10.0172 2.6177 4.2752 36 1 10.2183 2.5525 2.5079 37 1 12.4928 6.5429 3.5139 38 1 6.3640 2.5683 4.0438 39 1 8.9312 1.8902 5.5473 40 1 7.2898 1.7181 6.2141 41 1 7.7919 0.7321 4.8198 42 1 6.9825 4.9102 4.4166 43 1 6.8367 4.0846 5.9868 44 1 8.4457 4.4122 5.2996 45 1 4.0207 0.3801 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591758248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:12 Heat of formation + Delta-G solvation = -104.660204 kcal Electronic energy + Delta-G solvation = -27208.079964 eV Core-core repulsion = 23317.091891 eV Total energy + Delta-G solvation = -3890.988073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.02971 -40.88062 -38.34681 -37.69978 -36.98256 -34.91344 -32.63012 -32.30511 -31.73808 -31.12841 -29.13562 -28.11560 -28.01267 -24.46945 -23.89787 -23.30786 -22.81161 -20.08120 -19.49879 -19.08511 -18.45185 -18.08710 -17.23505 -17.10325 -17.06804 -16.63553 -16.57520 -16.21450 -16.03706 -15.53651 -14.94630 -14.89608 -14.79456 -14.58552 -14.50411 -14.26360 -13.79436 -13.71005 -13.57870 -13.42639 -13.27432 -12.91095 -12.89653 -12.76736 -12.66661 -12.38110 -12.28474 -12.08268 -12.05891 -11.92252 -11.79597 -11.57496 -11.37731 -10.87227 -10.80487 -10.29327 -9.51491 -9.43411 -9.26226 -8.32231 -6.36147 -0.23268 0.35744 0.71882 1.32100 1.37375 1.45065 1.64991 1.71404 2.28217 2.31910 2.39947 2.59457 2.88974 3.01835 3.53085 3.78404 3.95911 3.99215 4.12050 4.13030 4.26536 4.30147 4.39337 4.45028 4.46344 4.47680 4.50643 4.70394 4.79696 4.84253 4.87319 4.92401 4.92700 5.03445 5.06753 5.13278 5.26690 5.31808 5.41702 5.46236 5.53951 5.57449 5.64767 6.24150 6.41437 6.62294 6.66007 7.17778 7.32074 8.84984 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.002792 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.575543 B =10025.015597 C =10459.083246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.105 3.895 4 C -0.171 4.171 5 C -0.101 4.101 6 C -0.121 4.121 7 C -0.436 4.436 8 S 1.423 4.577 9 O -0.907 6.907 10 C -0.482 4.482 11 C 0.524 3.476 12 O -0.590 6.590 13 N -0.588 5.588 14 C 0.221 3.779 15 C -0.526 4.526 16 H 0.024 0.976 17 C 0.005 3.995 18 N -0.950 5.950 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.278 1.278 22 H -0.232 1.232 23 C 0.124 3.876 24 C -0.157 4.157 25 C -0.159 4.159 26 C -0.069 4.069 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.198 0.802 35 H 0.057 0.943 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.118 0.882 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.688 -19.581 -0.752 32.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.059 3.941 4 C -0.189 4.189 5 C -0.120 4.120 6 C -0.141 4.141 7 C -0.533 4.533 8 S 1.619 4.381 9 O -0.903 6.903 10 C -0.619 4.619 11 C 0.312 3.688 12 O -0.472 6.472 13 N -0.319 5.319 14 C 0.099 3.901 15 C -0.565 4.565 16 H 0.042 0.958 17 C -0.192 4.192 18 N -0.590 5.590 19 Si 0.770 3.230 20 H -0.202 1.202 21 H -0.203 1.203 22 H -0.155 1.155 23 C 0.021 3.979 24 C -0.215 4.215 25 C -0.217 4.217 26 C -0.089 4.089 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.084 0.916 30 H 0.176 0.824 31 H 0.160 0.840 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.215 0.785 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -24.483 -19.622 -1.952 31.437 hybrid contribution -0.225 2.941 0.931 3.093 sum -24.708 -16.681 -1.021 29.830 Atomic orbital electron populations 1.23385 0.76461 1.05831 1.02225 1.86082 1.23340 1.25789 1.88551 1.19257 0.92796 0.84908 0.97165 1.21720 1.01625 0.91714 1.03880 1.21244 0.93758 0.98732 0.98231 1.21107 0.95430 0.97634 0.99932 1.27722 1.19111 0.96905 1.09584 1.69460 0.80184 1.05255 0.83197 1.92998 1.81303 1.46130 1.69889 1.28156 0.96619 1.11825 1.25262 1.20176 0.89684 0.75866 0.83103 1.90672 1.63705 1.53221 1.39584 1.48069 1.08787 1.68866 1.06136 1.19369 0.78730 0.94531 0.97493 1.21548 0.93279 0.92175 1.49496 0.95809 1.25910 1.01651 0.97320 0.94334 1.70078 1.20693 1.16145 1.52115 0.85717 0.78367 0.79965 0.78940 1.20152 1.20317 1.15475 1.21490 0.94993 0.96096 0.85303 1.22144 1.01885 0.97770 0.99661 1.22158 1.02490 0.96574 1.00494 1.20424 0.91915 0.97322 0.99215 0.91810 0.86088 0.91642 0.82385 0.83967 0.88205 0.87006 0.78525 0.92548 0.95768 0.92461 0.86396 0.93575 0.88679 0.90647 0.95618 0.89051 0.93525 0.80293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.36 10.50 -92.39 -0.97 -5.33 16 3 C 0.11 1.70 6.69 22.51 0.15 1.85 16 4 C -0.17 -2.61 9.04 22.37 0.20 -2.41 16 5 C -0.10 -1.96 10.04 22.25 0.22 -1.74 16 6 C -0.12 -3.15 9.44 22.28 0.21 -2.94 16 7 C -0.44 -9.91 5.61 22.26 0.12 -9.78 16 8 S 1.42 39.44 12.69 -56.49 -0.72 38.72 16 9 O -0.91 -39.69 16.89 -148.98 -2.52 -42.20 16 10 C -0.48 -13.03 4.70 71.23 0.33 -12.70 16 11 C 0.52 21.05 7.67 87.66 0.67 21.72 16 12 O -0.59 -28.87 15.43 -3.04 -0.05 -28.91 16 13 N -0.59 -23.76 2.39 -802.14 -1.92 -25.68 16 14 C 0.22 10.75 3.80 85.63 0.33 11.08 16 15 C -0.53 -31.57 8.27 25.60 0.21 -31.36 16 16 H 0.02 1.62 7.84 -2.91 -0.02 1.60 16 17 C 0.01 0.30 5.47 84.65 0.46 0.77 16 18 N -0.95 -62.03 13.96 21.45 0.30 -61.73 16 19 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.23 -9.69 6.54 99.48 0.65 -9.04 16 23 C 0.12 3.64 3.12 44.99 0.14 3.78 16 24 C -0.16 -3.63 9.19 71.98 0.66 -2.97 16 25 C -0.16 -5.40 8.74 71.98 0.63 -4.77 16 26 C -0.07 -1.14 9.69 22.37 0.22 -0.93 16 27 H 0.06 0.28 7.67 -2.39 -0.02 0.27 16 28 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 29 H 0.06 0.27 7.65 -2.39 -0.02 0.25 16 30 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 31 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.10 3.13 7.45 -2.91 -0.02 3.11 16 33 H 0.11 3.15 7.85 -2.39 -0.02 3.13 16 34 H 0.20 2.86 7.73 -2.39 -0.02 2.84 16 35 H 0.06 2.50 5.19 -2.39 -0.01 2.49 16 36 H 0.02 1.26 6.78 -2.39 -0.02 1.24 16 37 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 38 H 0.12 2.56 5.85 -2.39 -0.01 2.55 16 39 H 0.05 1.28 6.35 -2.39 -0.02 1.27 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 42 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.05 1.96 6.60 -2.39 -0.02 1.94 16 45 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -95.84 379.75 2.64 -93.20 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.94 Total: 14.09 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 5.68 Total: -29.18 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -1.62 Total: -87.41 kcal Atomic # 8 Polarization: -72.91 SS G_CDS: -3.53 Total: -76.45 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Atomic # 16 Polarization: 39.44 SS G_CDS: -0.72 Total: 38.72 kcal Total: -95.84 2.64 -93.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591758248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.456 kcal (2) G-P(sol) polarization free energy of solvation -95.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds