Wall clock time and date at job start Tue Mar 31 2020 23:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47093 * 2 1 4 4 O 1.42902 * 109.46587 * 119.99957 * 2 1 3 5 5 C 1.42901 * 113.99960 * 150.00030 * 4 2 1 6 6 H 1.09003 * 110.88582 * 32.42449 * 5 4 2 7 7 C 1.55155 * 111.00251 * 268.54597 * 5 4 2 8 8 C 1.54332 * 102.94201 * 206.41859 * 7 5 4 9 9 N 1.47023 * 107.26824 * 22.19435 * 8 7 5 10 10 S 1.65599 * 125.64947 * 181.02137 * 9 8 7 11 11 O 1.42103 * 106.40113 * 336.48361 * 10 9 8 12 12 O 1.42092 * 106.40355 * 203.56230 * 10 9 8 13 13 C 1.76202 * 107.21944 * 90.01998 * 10 9 8 14 14 C 1.38654 * 119.87297 * 89.99916 * 13 10 9 15 15 C 1.38612 * 120.50170 * 179.97438 * 14 13 10 16 16 C 1.37643 * 120.24815 * 359.97438 * 15 14 13 17 17 C 1.40697 * 119.74264 * 0.02562 * 16 15 14 18 18 C 1.41391 * 120.24501 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00367 * 204.39059 * 18 17 16 20 20 C 1.39945 * 120.00052 * 24.38184 * 18 17 16 21 21 N 1.30828 * 119.99670 * 17.86494 * 20 18 17 22 22 Si 1.86801 * 120.00220 * 197.86363 * 20 18 17 23 23 H 1.48498 * 109.47297 * 94.69761 * 22 20 18 24 24 H 1.48498 * 109.46970 * 214.69301 * 22 20 18 25 25 H 1.48498 * 109.47250 * 334.69457 * 22 20 18 26 26 C 1.37594 * 119.87710 * 270.00763 * 13 10 9 27 27 C 1.47427 * 108.70600 * 1.28440 * 9 8 7 28 28 H 1.09000 * 109.46781 * 300.00222 * 1 2 3 29 29 H 1.08997 * 109.46860 * 59.99856 * 1 2 3 30 30 H 1.08990 * 109.47123 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47156 * 239.99387 * 2 1 3 32 32 H 1.09000 * 109.47489 * 60.00211 * 3 2 1 33 33 H 1.09005 * 109.46924 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47385 * 299.99822 * 3 2 1 35 35 H 1.08999 * 110.72334 * 88.05804 * 7 5 4 36 36 H 1.09001 * 110.72003 * 324.78165 * 7 5 4 37 37 H 1.08992 * 109.88122 * 262.77261 * 8 7 5 38 38 H 1.09004 * 109.87996 * 141.60658 * 8 7 5 39 39 H 1.08003 * 119.74968 * 0.27863 * 14 13 10 40 40 H 1.07999 * 119.87801 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.12717 * 179.97438 * 16 15 14 42 42 H 0.97003 * 120.00048 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.12816 * 359.97438 * 26 13 10 44 44 H 1.09003 * 110.36688 * 94.47818 * 27 9 8 45 45 H 1.08993 * 110.37011 * 216.81249 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9888 6 1 3.8897 -0.7773 0.2820 7 6 3.0725 -2.7960 0.5363 8 6 4.3552 -3.4860 1.0465 9 7 4.8910 -2.6592 2.1378 10 16 6.2744 -2.9690 2.9937 11 8 6.5104 -4.3659 2.8828 12 8 6.1333 -2.3012 4.2399 13 6 7.5997 -2.1720 2.1493 14 6 7.9378 -0.8664 2.4711 15 6 8.9783 -0.2271 1.8156 16 6 9.6886 -0.8838 0.8364 17 6 9.3544 -2.2088 0.5015 18 6 10.0765 -2.8933 -0.5030 19 1 9.6169 -3.7132 -1.0350 20 6 11.3870 -2.5084 -0.8081 21 7 12.0672 -1.7768 0.0366 22 14 12.1648 -3.0394 -2.4214 23 1 11.9848 -1.9681 -3.4339 24 1 13.6145 -3.2861 -2.2143 25 1 11.5137 -4.2858 -2.8983 26 6 8.2952 -2.8475 1.1729 27 6 3.9894 -1.5119 2.3482 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 3.0061 -2.8600 -0.5498 36 1 2.1889 -3.2303 1.0040 37 1 5.0853 -3.5541 0.2401 38 1 4.1171 -4.4824 1.4189 39 1 7.3893 -0.3453 3.2419 40 1 9.2333 0.7899 2.0746 41 1 10.4987 -0.3837 0.3266 42 1 12.9757 -1.5102 -0.1747 43 1 8.0304 -3.8645 0.9240 44 1 3.2697 -1.7345 3.1360 45 1 4.5630 -0.6195 2.5982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592060460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:49 Heat of formation + Delta-G solvation = -106.763844 kcal Electronic energy + Delta-G solvation = -27702.747601 eV Core-core repulsion = 23811.668308 eV Total energy + Delta-G solvation = -3891.079293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.35503 -37.65930 -37.11327 -36.69757 -35.32189 -33.86750 -32.83268 -30.13586 -30.09272 -29.80340 -28.46905 -27.42803 -25.50787 -22.60110 -21.86156 -21.74918 -21.08896 -20.93226 -18.77952 -18.07649 -17.26256 -17.16663 -15.99083 -15.67850 -15.31856 -15.01415 -14.95103 -14.78115 -14.58133 -13.71377 -13.66965 -13.40607 -13.38076 -13.28342 -12.88831 -12.62308 -12.60185 -12.46859 -12.12884 -11.94752 -11.74747 -11.62105 -11.56610 -11.43150 -11.38424 -11.34169 -11.30599 -11.07951 -11.07214 -10.88710 -10.63920 -10.61331 -9.80271 -9.68788 -9.64354 -9.38097 -8.79984 -8.05839 -7.73037 -6.94505 -4.55920 0.89205 2.17454 2.60525 2.98214 3.02380 3.03776 3.24461 3.63138 3.80835 4.24421 4.35594 4.40913 4.53944 4.70382 4.78865 4.92589 4.94713 4.96829 5.18289 5.30572 5.35267 5.37323 5.52993 5.53556 5.57725 5.61832 5.69926 5.80516 5.86690 5.92291 5.99640 6.00792 6.01945 6.14888 6.22195 6.45232 6.63062 6.74138 6.88357 7.02388 7.11305 7.19533 7.36037 7.70215 7.77875 7.91810 8.37663 8.64622 8.69335 10.01114 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.003309 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.196064 B = 8459.181580 C = 9314.079259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 C -0.178 4.178 4 O -0.369 6.369 5 C 0.076 3.924 6 H 0.082 0.918 7 C -0.150 4.150 8 C 0.122 3.878 9 N -1.012 6.012 10 S 2.703 3.297 11 O -0.964 6.964 12 O -0.968 6.968 13 C -0.632 4.632 14 C -0.147 4.147 15 C -0.121 4.121 16 C -0.118 4.118 17 C 0.091 3.909 18 C -0.461 4.461 19 H 0.083 0.917 20 C 0.074 3.926 21 N -0.793 5.793 22 Si 0.913 3.087 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.260 1.260 26 C -0.126 4.126 27 C 0.132 3.868 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.284 0.716 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.684 3.679 -3.436 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.235 4.235 4 O -0.288 6.288 5 C 0.017 3.983 6 H 0.100 0.900 7 C -0.189 4.189 8 C -0.003 4.003 9 N -0.850 5.850 10 S 2.801 3.199 11 O -0.955 6.955 12 O -0.958 6.958 13 C -0.724 4.724 14 C -0.168 4.168 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.088 3.912 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.144 4.144 21 N -0.418 5.418 22 Si 0.737 3.263 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.184 1.184 26 C -0.147 4.147 27 C 0.006 3.994 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.096 0.904 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.462 3.230 -2.389 16.945 hybrid contribution 1.132 0.297 -1.485 1.891 sum -15.330 3.527 -3.874 16.200 Atomic orbital electron populations 1.21853 0.93631 1.02651 1.02445 1.22116 0.94899 0.92484 0.88235 1.22333 1.01955 0.96691 1.02528 1.87915 1.35830 1.69496 1.35533 1.23357 0.85212 0.92380 0.97365 0.90028 1.23139 0.98237 0.95992 1.01573 1.21623 0.95141 0.94321 0.89242 1.58703 1.39769 1.35339 1.51200 1.01371 0.71965 0.73508 0.73063 1.93526 1.84808 1.30440 1.86683 1.93512 1.86133 1.76520 1.39658 1.29815 1.19960 1.07201 1.15392 1.20086 1.01076 0.93427 1.02260 1.20815 0.96633 0.98526 0.98045 1.21650 0.99672 0.94444 0.97996 1.17683 0.90801 0.91514 0.91203 1.19619 0.97350 1.15301 1.16720 0.89916 1.25948 0.97221 0.93503 0.97711 1.69788 1.10578 1.28236 1.33193 0.86217 0.78417 0.80134 0.81552 1.19253 1.20139 1.18373 1.20739 0.99878 0.97830 0.96289 1.21770 0.92532 0.88700 0.96370 0.91795 0.91365 0.92014 0.92055 0.91702 0.92156 0.91743 0.90157 0.89730 0.90955 0.90827 0.87636 0.88360 0.85727 0.90533 0.87094 0.90356 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.56 37.16 0.36 -0.71 16 2 C 0.08 0.70 3.21 -26.73 -0.09 0.62 16 3 C -0.18 -1.47 9.53 37.16 0.35 -1.11 16 4 O -0.37 -4.08 9.80 -35.23 -0.35 -4.42 16 5 C 0.08 0.87 3.28 -24.46 -0.08 0.79 16 6 H 0.08 0.91 7.78 -51.93 -0.40 0.50 16 7 C -0.15 -1.54 6.68 -24.89 -0.17 -1.71 16 8 C 0.12 1.57 6.99 -3.06 -0.02 1.55 16 9 N -1.01 -15.55 3.70 -111.29 -0.41 -15.97 16 10 S 2.70 52.46 5.93 -107.50 -0.64 51.82 16 11 O -0.96 -20.73 16.85 -57.17 -0.96 -21.69 16 12 O -0.97 -20.30 16.85 -57.17 -0.96 -21.27 16 13 C -0.63 -13.90 5.97 -39.66 -0.24 -14.14 16 14 C -0.15 -3.21 9.53 -39.29 -0.37 -3.59 16 15 C -0.12 -2.71 10.02 -39.66 -0.40 -3.10 16 16 C -0.12 -2.92 8.70 -38.87 -0.34 -3.25 16 17 C 0.09 2.35 5.58 -106.83 -0.60 1.75 16 18 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 19 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 20 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 21 N -0.79 -19.70 10.95 55.55 0.61 -19.10 16 22 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.13 -3.02 9.26 -38.87 -0.36 -3.38 16 27 C 0.13 1.77 6.72 -2.41 -0.02 1.75 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.49 7.82 -51.93 -0.41 0.09 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.54 8.00 -51.93 -0.42 0.13 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.11 2.08 7.60 -52.48 -0.40 1.69 16 40 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.13 3.13 6.16 -52.49 -0.32 2.81 16 42 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 43 H 0.11 2.54 7.60 -52.49 -0.40 2.14 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -30.32 383.00 -11.33 -41.66 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.97 Total: 5.22 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: -2.39 Total: -34.88 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.20 Total: -35.06 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -2.27 Total: -47.38 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 52.46 SS G_CDS: -0.64 Total: 51.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.32 -11.33 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592060460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.108 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds