Wall clock time and date at job start Tue Mar 31 2020 23:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46873 * 2 1 4 4 C 1.50701 * 109.47606 * 239.99920 * 2 1 3 5 5 C 1.38238 * 119.99843 * 279.72802 * 4 2 1 6 6 C 1.38234 * 119.99550 * 179.78642 * 5 4 2 7 7 C 1.38231 * 120.00216 * 0.46270 * 6 5 4 8 8 S 1.76202 * 119.99880 * 179.79280 * 7 6 5 9 9 C 1.81408 * 104.44702 * 269.97588 * 8 7 6 10 10 O 1.42098 * 104.27659 * 26.04726 * 8 7 6 11 11 O 1.42098 * 104.27677 * 153.90907 * 8 7 6 12 12 C 1.38231 * 120.00108 * 359.76708 * 7 6 5 13 13 C 1.38233 * 119.99778 * 99.99720 * 4 2 1 14 14 N 1.46900 * 109.47122 * 119.99672 * 2 1 3 15 15 C 1.47448 * 111.00041 * 174.16099 * 14 2 1 16 16 C 1.54321 * 107.23159 * 123.26094 * 15 14 2 17 17 C 1.55422 * 103.04810 * 22.28093 * 16 15 14 18 18 O 1.42906 * 111.00250 * 82.39224 * 17 16 15 19 19 C 1.50702 * 111.10698 * 206.29460 * 17 16 15 20 20 H 1.08002 * 119.99583 * 112.17314 * 19 17 16 21 21 C 1.37874 * 120.00111 * 292.17739 * 19 17 16 22 22 N 1.31511 * 119.99903 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 119.99891 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47205 * 90.00035 * 23 21 19 25 25 H 1.48500 * 109.46905 * 210.00012 * 23 21 19 26 26 H 1.48497 * 109.47078 * 329.99991 * 23 21 19 27 27 C 1.47846 * 111.00020 * 295.00230 * 14 2 1 28 28 H 1.09000 * 109.46573 * 60.00441 * 1 2 3 29 29 H 1.08997 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47333 * 300.00165 * 1 2 3 31 31 H 1.07997 * 119.99622 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.99573 * 180.25252 * 6 5 4 33 33 H 1.08994 * 109.46711 * 60.00293 * 9 8 7 34 34 H 1.09001 * 109.46626 * 180.02562 * 9 8 7 35 35 H 1.08994 * 109.47074 * 299.99701 * 9 8 7 36 36 H 1.08005 * 120.00232 * 179.97438 * 12 7 6 37 37 H 1.07993 * 120.00339 * 359.97438 * 13 4 2 38 38 H 1.08999 * 109.88737 * 242.66366 * 15 14 2 39 39 H 1.08997 * 109.88833 * 3.69001 * 15 14 2 40 40 H 1.09004 * 110.70290 * 140.66846 * 16 15 14 41 41 H 1.09005 * 110.69934 * 263.71964 * 16 15 14 42 42 H 0.96696 * 113.99639 * 67.88556 * 18 17 16 43 43 H 0.97006 * 120.00009 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.37464 * 332.46590 * 27 14 2 45 45 H 1.08999 * 110.37318 * 94.69366 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.0722 -2.0918 -1.2631 6 6 2.5289 -2.7435 -2.3934 7 6 2.9549 -2.0137 -3.4874 8 16 3.5422 -2.8443 -4.9260 9 6 5.3244 -3.0324 -4.6442 10 8 2.8953 -4.1090 -4.8891 11 8 3.2987 -1.9275 -5.9840 12 6 2.9196 -0.6323 -3.4529 13 6 2.4588 0.0195 -2.3242 14 7 2.0196 -0.6924 1.1995 15 6 3.4869 -0.8346 1.1656 16 6 4.0398 -0.1741 2.4460 17 6 2.8194 -0.1978 3.4082 18 8 2.6969 -1.4692 4.0489 19 6 2.9088 0.9105 4.4255 20 1 2.2035 1.7278 4.3969 21 6 3.8911 0.8810 5.3925 22 7 4.7498 -0.1145 5.4275 23 14 4.0023 2.2551 6.6531 24 1 3.1744 1.9095 7.8364 25 1 5.4163 2.4292 7.0720 26 1 3.5047 3.5189 6.0528 27 6 1.6462 0.0440 2.4259 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7435 -2.6619 -0.4068 32 1 2.5561 -3.8228 -2.4205 33 1 5.4893 -3.6184 -3.7402 34 1 5.7749 -3.5425 -5.4957 35 1 5.7796 -2.0489 -4.5280 36 1 3.2528 -0.0620 -4.3075 37 1 2.4315 1.0987 -2.2972 38 1 3.7568 -1.8905 1.1468 39 1 3.8877 -0.3338 0.2843 40 1 4.8645 -0.7577 2.8554 41 1 4.3562 0.8496 2.2458 42 1 3.4088 -1.6652 4.6732 43 1 5.4406 -0.1355 6.1081 44 1 1.5427 1.1080 2.2130 45 1 0.7182 -0.3518 2.8384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:59 Heat of formation + Delta-G solvation = -83.797515 kcal Electronic energy + Delta-G solvation = -27773.507100 eV Core-core repulsion = 23883.423702 eV Total energy + Delta-G solvation = -3890.083399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.94816 -38.17714 -37.30211 -36.14901 -35.35957 -32.69016 -32.09324 -31.10497 -30.26575 -29.71535 -28.26529 -27.63994 -25.05490 -23.65004 -22.84557 -21.35847 -19.77693 -19.46569 -19.20036 -17.94638 -17.15267 -16.41863 -16.31845 -15.73371 -15.56352 -14.97620 -14.81307 -14.66856 -14.38711 -13.95169 -13.69173 -13.58887 -13.50598 -13.38231 -12.90522 -12.83570 -12.59243 -12.30824 -12.28867 -12.17993 -11.87194 -11.74304 -11.41745 -11.39901 -11.30145 -11.18390 -11.06994 -11.02024 -10.81764 -10.52151 -10.44221 -10.32206 -9.96222 -9.32992 -9.15909 -9.04531 -8.64857 -8.12495 -7.74089 -6.28700 -4.36731 -0.16121 0.75113 1.27565 2.66200 3.17184 3.24695 3.27069 3.33272 3.76053 3.89600 4.21578 4.38419 4.46216 4.57982 4.65966 4.81351 4.84219 4.99501 5.29250 5.31571 5.32632 5.40964 5.45570 5.57232 5.67638 5.80211 5.83466 5.90697 5.99008 6.00450 6.03346 6.08129 6.19401 6.31474 6.37424 6.53910 6.59978 6.78189 6.81202 6.98296 7.35418 7.39157 7.51737 7.65285 7.76184 8.06939 8.65219 9.32717 9.55158 10.78427 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022748 B = 0.002579 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.561857 B =10854.764381 C =11228.800088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.011 4.011 5 C -0.111 4.111 6 C -0.028 4.028 7 C -0.667 4.667 8 S 2.502 3.498 9 C -0.651 4.651 10 O -0.941 6.941 11 O -0.943 6.943 12 C -0.027 4.027 13 C -0.141 4.141 14 N -0.518 5.518 15 C 0.046 3.954 16 C -0.148 4.148 17 C 0.255 3.745 18 O -0.580 6.580 19 C -0.537 4.537 20 H 0.061 0.939 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.060 3.940 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.382 0.618 43 H 0.268 0.732 44 H 0.046 0.954 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.375 -2.921 -17.360 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.006 4.006 3 H 0.068 0.932 4 C -0.011 4.011 5 C -0.130 4.130 6 C -0.047 4.047 7 C -0.755 4.755 8 S 2.683 3.317 9 C -0.800 4.800 10 O -0.938 6.938 11 O -0.940 6.940 12 C -0.046 4.046 13 C -0.160 4.160 14 N -0.243 5.243 15 C -0.081 4.081 16 C -0.187 4.187 17 C 0.214 3.786 18 O -0.390 6.390 19 C -0.575 4.575 20 H 0.079 0.921 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.728 3.272 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.066 4.066 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.233 0.767 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.726 -3.773 -18.335 18.733 hybrid contribution 1.559 2.003 1.826 3.127 sum 0.833 -1.770 -16.509 16.624 Atomic orbital electron populations 1.21793 0.93147 1.02860 1.01714 1.20915 0.96116 0.95074 0.88472 0.93177 1.20293 0.92108 0.94365 0.94343 1.21307 0.99224 0.94244 0.98196 1.20963 0.92727 0.99992 0.91056 1.30328 1.20098 1.05250 1.19842 1.04983 0.77600 0.74562 0.74556 1.30226 1.25283 1.12183 1.12342 1.93580 1.72011 1.41798 1.86411 1.93571 1.83989 1.64030 1.52440 1.20807 0.94100 0.92185 0.97521 1.21180 1.01114 1.00265 0.93445 1.63701 1.12064 1.47721 1.00818 1.22802 0.87033 1.00415 0.97885 1.23331 1.01377 0.99245 0.94731 1.19531 0.87737 0.82893 0.88463 1.86100 1.53896 1.37405 1.61593 1.21568 1.14637 1.07716 1.13600 0.92062 1.25001 0.94643 0.96113 0.97341 1.69579 1.17732 1.31343 1.35004 0.86457 0.77313 0.81993 0.81420 1.20370 1.21078 1.19847 1.23013 1.00145 0.94854 0.88630 0.92624 0.91604 0.91648 0.83812 0.84307 0.84849 0.85213 0.84997 0.84453 0.85330 0.91651 0.94626 0.90858 0.92751 0.76653 0.92189 0.93540 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.16 37.16 0.34 -1.46 16 2 C 0.10 1.51 1.99 -68.86 -0.14 1.38 16 3 H 0.05 0.75 7.83 -51.93 -0.41 0.34 16 4 C -0.01 -0.14 3.48 -104.62 -0.36 -0.51 16 5 C -0.11 -1.46 8.70 -39.58 -0.34 -1.81 16 6 C -0.03 -0.33 9.47 -39.59 -0.37 -0.71 16 7 C -0.67 -7.16 5.66 -39.59 -0.22 -7.38 16 8 S 2.50 22.43 5.80 -107.50 -0.62 21.80 16 9 C -0.65 -3.32 10.80 101.05 1.09 -2.22 16 10 O -0.94 -11.38 17.13 -57.54 -0.99 -12.37 16 11 O -0.94 -11.14 17.13 -57.54 -0.99 -12.12 16 12 C -0.03 -0.29 9.47 -39.58 -0.37 -0.67 16 13 C -0.14 -1.66 9.67 -39.58 -0.38 -2.04 16 14 N -0.52 -9.23 4.38 -224.67 -0.98 -10.21 16 15 C 0.05 0.85 5.70 -2.83 -0.02 0.84 16 16 C -0.15 -3.26 5.65 -24.75 -0.14 -3.40 16 17 C 0.25 6.08 0.89 -89.48 -0.08 6.00 16 18 O -0.58 -14.88 13.18 -35.23 -0.46 -15.34 16 19 C -0.54 -13.92 8.26 -34.44 -0.28 -14.20 16 20 H 0.06 1.58 7.77 -52.49 -0.41 1.17 16 21 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 22 N -0.90 -23.35 10.80 55.43 0.60 -22.75 16 23 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C 0.06 1.24 4.74 -2.30 -0.01 1.23 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.87 7.35 -51.93 -0.38 0.49 16 31 H 0.14 1.99 7.71 -52.49 -0.40 1.58 16 32 H 0.14 1.37 7.57 -52.48 -0.40 0.98 16 33 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.14 1.20 7.57 -52.48 -0.40 0.80 16 37 H 0.13 1.29 8.04 -52.49 -0.42 0.87 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.04 0.61 6.80 -51.93 -0.35 0.25 16 40 H 0.07 1.73 7.85 -51.93 -0.41 1.32 16 41 H 0.05 1.22 8.04 -51.93 -0.42 0.80 16 42 H 0.38 10.02 6.93 45.56 0.32 10.34 16 43 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 44 H 0.05 0.92 7.57 -51.93 -0.39 0.53 16 45 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -31.88 374.52 -10.38 -42.26 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.17 Total: 11.19 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -1.40 Total: -23.22 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: -0.39 Total: -32.96 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -2.44 Total: -39.83 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 22.43 SS G_CDS: -0.62 Total: 21.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.88 -10.38 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.536 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds