Wall clock time and date at job start Tue Mar 31 2020 23:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46873 * 2 1 4 4 C 1.50701 * 109.47606 * 239.99920 * 2 1 3 5 5 C 1.38238 * 119.99843 * 279.72802 * 4 2 1 6 6 C 1.38234 * 119.99550 * 179.78642 * 5 4 2 7 7 C 1.38231 * 120.00216 * 0.46270 * 6 5 4 8 8 S 1.76202 * 119.99880 * 179.79280 * 7 6 5 9 9 C 1.81408 * 104.44702 * 269.97588 * 8 7 6 10 10 O 1.42098 * 104.27659 * 26.04726 * 8 7 6 11 11 O 1.42098 * 104.27677 * 153.90907 * 8 7 6 12 12 C 1.38231 * 120.00108 * 359.76708 * 7 6 5 13 13 C 1.38233 * 119.99778 * 99.99720 * 4 2 1 14 14 N 1.46900 * 109.47122 * 119.99672 * 2 1 3 15 15 C 1.47448 * 111.00041 * 174.16099 * 14 2 1 16 16 C 1.54321 * 107.23159 * 123.26094 * 15 14 2 17 17 C 1.55422 * 103.04810 * 22.28093 * 16 15 14 18 18 O 1.42906 * 111.00250 * 82.39224 * 17 16 15 19 19 C 1.50702 * 111.10698 * 206.29460 * 17 16 15 20 20 H 1.08002 * 119.99583 * 112.17314 * 19 17 16 21 21 C 1.37874 * 120.00111 * 292.17739 * 19 17 16 22 22 N 1.31511 * 119.99903 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 119.99891 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47205 * 90.00035 * 23 21 19 25 25 H 1.48500 * 109.46905 * 210.00012 * 23 21 19 26 26 H 1.48497 * 109.47078 * 329.99991 * 23 21 19 27 27 C 1.47846 * 111.00020 * 295.00230 * 14 2 1 28 28 H 1.09000 * 109.46573 * 60.00441 * 1 2 3 29 29 H 1.08997 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47333 * 300.00165 * 1 2 3 31 31 H 1.07997 * 119.99622 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.99573 * 180.25252 * 6 5 4 33 33 H 1.08994 * 109.46711 * 60.00293 * 9 8 7 34 34 H 1.09001 * 109.46626 * 180.02562 * 9 8 7 35 35 H 1.08994 * 109.47074 * 299.99701 * 9 8 7 36 36 H 1.08005 * 120.00232 * 179.97438 * 12 7 6 37 37 H 1.07993 * 120.00339 * 359.97438 * 13 4 2 38 38 H 1.08999 * 109.88737 * 242.66366 * 15 14 2 39 39 H 1.08997 * 109.88833 * 3.69001 * 15 14 2 40 40 H 1.09004 * 110.70290 * 140.66846 * 16 15 14 41 41 H 1.09005 * 110.69934 * 263.71964 * 16 15 14 42 42 H 0.96696 * 113.99639 * 67.88556 * 18 17 16 43 43 H 0.97006 * 120.00009 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.37464 * 332.46590 * 27 14 2 45 45 H 1.08999 * 110.37318 * 94.69366 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.0722 -2.0918 -1.2631 6 6 2.5289 -2.7435 -2.3934 7 6 2.9549 -2.0137 -3.4874 8 16 3.5422 -2.8443 -4.9260 9 6 5.3244 -3.0324 -4.6442 10 8 2.8953 -4.1090 -4.8891 11 8 3.2987 -1.9275 -5.9840 12 6 2.9196 -0.6323 -3.4529 13 6 2.4588 0.0195 -2.3242 14 7 2.0196 -0.6924 1.1995 15 6 3.4869 -0.8346 1.1656 16 6 4.0398 -0.1741 2.4460 17 6 2.8194 -0.1978 3.4082 18 8 2.6969 -1.4692 4.0489 19 6 2.9088 0.9105 4.4255 20 1 2.2035 1.7278 4.3969 21 6 3.8911 0.8810 5.3925 22 7 4.7498 -0.1145 5.4275 23 14 4.0023 2.2551 6.6531 24 1 3.1744 1.9095 7.8364 25 1 5.4163 2.4292 7.0720 26 1 3.5047 3.5189 6.0528 27 6 1.6462 0.0440 2.4259 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7435 -2.6619 -0.4068 32 1 2.5561 -3.8228 -2.4205 33 1 5.4893 -3.6184 -3.7402 34 1 5.7749 -3.5425 -5.4957 35 1 5.7796 -2.0489 -4.5280 36 1 3.2528 -0.0620 -4.3075 37 1 2.4315 1.0987 -2.2972 38 1 3.7568 -1.8905 1.1468 39 1 3.8877 -0.3338 0.2843 40 1 4.8645 -0.7577 2.8554 41 1 4.3562 0.8496 2.2458 42 1 3.4088 -1.6652 4.6732 43 1 5.4406 -0.1355 6.1081 44 1 1.5427 1.1080 2.2130 45 1 0.7182 -0.3518 2.8384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:58 Heat of formation + Delta-G solvation = -107.540810 kcal Electronic energy + Delta-G solvation = -27774.536687 eV Core-core repulsion = 23883.423702 eV Total energy + Delta-G solvation = -3891.112985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.08528 -39.56999 -38.10810 -37.03096 -36.88126 -34.18211 -34.00665 -32.00388 -31.35160 -30.24029 -29.98129 -29.06898 -26.75779 -24.79664 -23.77831 -22.70288 -21.40150 -20.94164 -19.97741 -19.08511 -18.71571 -17.36919 -17.11209 -16.96975 -16.92059 -16.60969 -16.22668 -15.79705 -15.52292 -15.44695 -14.70982 -14.50823 -14.29091 -14.27175 -14.04208 -13.91952 -13.81995 -13.69099 -13.45261 -13.17917 -13.11785 -13.10596 -13.01031 -12.74585 -12.71072 -12.53677 -12.31612 -12.25551 -12.18397 -12.02941 -11.91215 -11.71004 -11.43757 -11.15357 -10.60529 -10.16149 -10.02388 -9.95003 -9.19573 -8.24049 -6.39353 -0.82206 -0.15420 0.37107 1.39321 1.41988 1.50510 1.95526 2.36178 2.45737 2.99484 3.04197 3.08512 3.22930 3.57219 3.83304 3.97902 4.00922 4.07252 4.13461 4.17911 4.18364 4.29056 4.38233 4.42692 4.46800 4.57422 4.73191 4.75350 4.78916 4.89553 4.91684 4.99362 5.02947 5.05621 5.13537 5.17751 5.26165 5.28930 5.46821 5.53370 5.54931 5.78600 5.89252 5.94208 6.18728 6.27490 6.66390 7.32808 7.51400 8.81459 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022748 B = 0.002579 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.561857 B =10854.764381 C =11228.800088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.027 4.027 5 C -0.125 4.125 6 C -0.035 4.035 7 C -0.667 4.667 8 S 2.513 3.487 9 C -0.628 4.628 10 O -0.978 6.978 11 O -0.974 6.974 12 C -0.030 4.030 13 C -0.143 4.143 14 N -0.519 5.519 15 C 0.060 3.940 16 C -0.139 4.139 17 C 0.236 3.764 18 O -0.590 6.590 19 C -0.560 4.560 20 H 0.056 0.944 21 C 0.030 3.970 22 N -0.913 5.913 23 Si 0.960 3.040 24 H -0.277 1.277 25 H -0.281 1.281 26 H -0.270 1.270 27 C 0.071 3.929 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.146 0.854 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.375 0.625 43 H 0.270 0.730 44 H 0.051 0.949 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.373 -2.269 -18.991 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.005 4.005 3 H 0.070 0.930 4 C -0.027 4.027 5 C -0.144 4.144 6 C -0.054 4.054 7 C -0.753 4.753 8 S 2.696 3.304 9 C -0.782 4.782 10 O -0.975 6.975 11 O -0.972 6.972 12 C -0.049 4.049 13 C -0.162 4.162 14 N -0.244 5.244 15 C -0.067 4.067 16 C -0.179 4.179 17 C 0.195 3.805 18 O -0.399 6.399 19 C -0.599 4.599 20 H 0.074 0.926 21 C -0.171 4.171 22 N -0.553 5.553 23 Si 0.785 3.215 24 H -0.203 1.203 25 H -0.206 1.206 26 H -0.195 1.195 27 C -0.056 4.056 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.177 0.823 37 H 0.164 0.836 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.226 0.774 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.214 -3.109 -19.972 20.214 hybrid contribution 1.309 1.756 2.270 3.154 sum 1.523 -1.352 -17.702 17.819 Atomic orbital electron populations 1.21770 0.92106 1.02777 1.02462 1.20973 0.97008 0.94925 0.87598 0.93007 1.20190 0.93712 0.94417 0.94399 1.21266 1.00216 0.94366 0.98518 1.21121 0.92604 1.00773 0.90914 1.30634 1.19251 1.05501 1.19866 1.04653 0.79417 0.73057 0.73278 1.30055 1.19675 1.14183 1.14248 1.93533 1.74542 1.42869 1.86564 1.93529 1.85658 1.64630 1.53351 1.21129 0.93456 0.92418 0.97863 1.21395 1.00527 1.01195 0.93122 1.63634 1.11501 1.48041 1.01193 1.22631 0.87388 1.00047 0.96652 1.23140 1.00062 0.98621 0.96046 1.19813 0.90019 0.81684 0.88945 1.86094 1.53734 1.38461 1.61618 1.21854 1.14885 1.08329 1.14803 0.92557 1.25690 0.94341 0.98129 0.98907 1.69664 1.17893 1.32369 1.35414 0.85533 0.77292 0.79551 0.79086 1.20304 1.20622 1.19457 1.22807 0.98447 0.95293 0.89065 0.90498 0.92110 0.92231 0.85176 0.83163 0.83292 0.82741 0.82945 0.82268 0.83626 0.91888 0.92715 0.93047 0.93611 0.77446 0.92064 0.93095 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.16 71.98 0.66 -2.71 16 2 C 0.10 2.93 1.99 44.17 0.09 3.02 16 3 H 0.05 1.47 7.83 -2.38 -0.02 1.45 16 4 C -0.03 -0.68 3.48 -19.87 -0.07 -0.75 16 5 C -0.12 -3.22 8.70 22.27 0.19 -3.02 16 6 C -0.04 -0.79 9.47 22.27 0.21 -0.58 16 7 C -0.67 -13.04 5.66 22.27 0.13 -12.91 16 8 S 2.51 39.98 5.80 -56.49 -0.33 39.65 16 9 C -0.63 -3.84 10.80 113.37 1.22 -2.62 16 10 O -0.98 -22.61 17.13 -127.65 -2.19 -24.80 16 11 O -0.97 -21.31 17.13 -127.65 -2.19 -23.50 16 12 C -0.03 -0.58 9.47 22.27 0.21 -0.37 16 13 C -0.14 -3.07 9.67 22.27 0.22 -2.86 16 14 N -0.52 -18.38 4.38 -864.72 -3.79 -22.17 16 15 C 0.06 2.21 5.70 86.65 0.49 2.71 16 16 C -0.14 -6.24 5.65 31.88 0.18 -6.06 16 17 C 0.24 11.46 0.89 -10.05 -0.01 11.45 16 18 O -0.59 -31.04 13.18 -148.98 -1.96 -33.01 16 19 C -0.56 -29.45 8.26 25.60 0.21 -29.24 16 20 H 0.06 2.93 7.77 -2.91 -0.02 2.91 16 21 C 0.03 1.54 5.30 84.65 0.45 1.98 16 22 N -0.91 -48.17 10.80 21.45 0.23 -47.94 16 23 Si 0.96 41.31 29.54 68.60 2.03 43.34 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 C 0.07 2.94 4.74 86.77 0.41 3.36 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.55 7.35 -2.39 -0.02 1.53 16 31 H 0.13 3.65 7.71 -2.91 -0.02 3.62 16 32 H 0.15 2.86 7.57 -2.91 -0.02 2.84 16 33 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.16 2.31 7.57 -2.91 -0.02 2.29 16 37 H 0.15 2.54 8.04 -2.91 -0.02 2.52 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 1.79 6.80 -2.39 -0.02 1.78 16 40 H 0.05 2.48 7.85 -2.38 -0.02 2.47 16 41 H 0.05 2.07 8.04 -2.38 -0.02 2.05 16 42 H 0.38 20.34 6.93 -74.06 -0.51 19.82 16 43 H 0.27 13.55 8.31 -92.70 -0.77 12.78 16 44 H 0.05 2.03 7.57 -2.39 -0.02 2.01 16 45 H 0.06 2.73 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -69.21 374.52 -3.12 -72.33 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.48 Total: 34.69 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 4.59 Total: -38.59 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -3.55 Total: -70.11 kcal Atomic # 8 Polarization: -74.97 SS G_CDS: -6.34 Total: -81.30 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 39.98 SS G_CDS: -0.33 Total: 39.65 kcal Total: -69.21 -3.12 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.210 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds