Wall clock time and date at job start Tue Mar 31 2020 23:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47087 * 2 1 4 4 C 1.50697 * 109.47224 * 120.00605 * 2 1 3 5 5 C 1.38228 * 120.00218 * 79.72856 * 4 2 1 6 6 C 1.38237 * 120.00185 * 179.80825 * 5 4 2 7 7 C 1.38230 * 119.99752 * 0.39542 * 6 5 4 8 8 S 1.76200 * 120.00153 * 179.83680 * 7 6 5 9 9 C 1.81407 * 104.44624 * 270.02196 * 8 7 6 10 10 O 1.42100 * 104.27846 * 26.08813 * 8 7 6 11 11 O 1.42093 * 104.27920 * 153.95066 * 8 7 6 12 12 C 1.38238 * 120.00055 * 359.85652 * 7 6 5 13 13 C 1.38230 * 119.99832 * 359.95593 * 12 7 6 14 14 N 1.46904 * 109.46705 * 240.00756 * 2 1 3 15 15 C 1.47440 * 110.99676 * 180.12582 * 14 2 1 16 16 C 1.54317 * 107.23368 * 236.73977 * 15 14 2 17 17 C 1.55144 * 103.01861 * 337.71644 * 16 15 14 18 18 O 1.42902 * 110.99037 * 277.56168 * 17 16 15 19 19 C 1.50699 * 110.99303 * 153.74518 * 17 16 15 20 20 H 1.08002 * 119.99703 * 241.45490 * 19 17 16 21 21 C 1.37875 * 120.00351 * 61.45341 * 19 17 16 22 22 N 1.31515 * 119.99669 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00439 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46785 * 60.00074 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47258 * 300.00496 * 23 21 19 27 27 C 1.47842 * 111.00238 * 59.27972 * 14 2 1 28 28 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46799 * 299.99287 * 1 2 3 30 30 H 1.08988 * 109.47194 * 59.99658 * 1 2 3 31 31 H 1.07999 * 120.00079 * 359.97438 * 5 4 2 32 32 H 1.08002 * 120.00298 * 180.22966 * 6 5 4 33 33 H 1.09000 * 109.47254 * 59.99661 * 9 8 7 34 34 H 1.09005 * 109.46940 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.46861 * 299.99576 * 9 8 7 36 36 H 1.07997 * 119.99875 * 179.97438 * 12 7 6 37 37 H 1.08007 * 119.99759 * 180.02562 * 13 12 7 38 38 H 1.09000 * 109.89463 * 117.33566 * 15 14 2 39 39 H 1.09000 * 109.88994 * 356.14383 * 15 14 2 40 40 H 1.08999 * 110.70846 * 96.09223 * 16 15 14 41 41 H 1.09000 * 110.71111 * 219.33808 * 16 15 14 42 42 H 0.96696 * 114.00297 * 298.54765 * 18 17 16 43 43 H 0.96998 * 120.00060 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.37187 * 265.19138 * 27 14 2 45 45 H 1.09002 * 110.37256 * 27.42242 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.0616 -2.0920 1.2672 6 6 2.5261 -2.7437 2.3944 7 6 2.9538 -2.0140 3.4877 8 16 3.5419 -2.8446 4.9260 9 6 2.0623 -3.0817 5.9484 10 8 4.0174 -4.0925 4.4402 11 8 4.4237 -1.9109 5.5340 12 6 2.9197 -0.6324 3.4528 13 6 2.4589 0.0192 2.3242 14 7 2.0196 -0.6924 -1.1996 15 6 3.4935 -0.7147 -1.2322 16 6 3.9315 -0.0571 -2.5577 17 6 2.6765 -0.2127 -3.4565 18 8 2.6305 -1.5114 -4.0510 19 6 2.6307 0.8632 -4.5107 20 1 1.8065 1.5607 -4.5348 21 6 3.6408 0.9571 -5.4443 22 7 4.6442 0.1074 -5.4152 23 14 3.5836 2.2902 -6.7515 24 1 3.5738 3.6239 -6.0983 25 1 4.7780 2.1771 -7.6266 26 1 2.3539 2.1302 -7.5684 27 6 1.5315 -0.0319 -2.4289 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8898 31 1 1.7240 -2.6622 0.4144 32 1 2.5524 -3.8231 2.4218 33 1 1.3347 -3.6811 5.4012 34 1 2.3360 -3.5953 6.8701 35 1 1.6271 -2.1116 6.1882 36 1 3.2535 -0.0623 4.3071 37 1 2.4327 1.0986 2.2968 38 1 3.8498 -1.7441 -1.1935 39 1 3.8917 -0.1502 -0.3890 40 1 4.1684 0.9959 -2.4058 41 1 4.7817 -0.5864 -2.9881 42 1 3.3812 -1.7065 -4.6284 43 1 5.3551 0.1736 -6.0718 44 1 0.6223 -0.5167 -2.7847 45 1 1.3488 1.0267 -2.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:07 Heat of formation + Delta-G solvation = -83.236704 kcal Electronic energy + Delta-G solvation = -27724.030895 eV Core-core repulsion = 23833.971815 eV Total energy + Delta-G solvation = -3890.059080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.90785 -38.19970 -37.29814 -36.13994 -35.34337 -32.64624 -32.15537 -31.09712 -30.25174 -29.73676 -28.25234 -27.58137 -25.05751 -23.61719 -22.85298 -21.32627 -19.78748 -19.42341 -19.19317 -17.94847 -17.07412 -16.44045 -16.31611 -15.71696 -15.58107 -14.92838 -14.78893 -14.66033 -14.39026 -13.96079 -13.75695 -13.55283 -13.54374 -13.30370 -13.04021 -12.82542 -12.56311 -12.28159 -12.26029 -12.17113 -11.82354 -11.73820 -11.43701 -11.33464 -11.29637 -11.18514 -11.10338 -10.99411 -10.77736 -10.52858 -10.45580 -10.27887 -9.89631 -9.26302 -9.14460 -9.03925 -8.62359 -8.11006 -7.72178 -6.23468 -4.32140 -0.17158 0.75753 1.28209 2.66161 3.21124 3.26717 3.28904 3.34218 3.76592 3.87736 4.24894 4.39421 4.42017 4.55326 4.68408 4.81863 4.84510 5.04428 5.26100 5.29624 5.32062 5.38912 5.45650 5.59883 5.68670 5.79045 5.81656 5.90571 5.99575 6.03976 6.04817 6.11225 6.19126 6.29693 6.42350 6.55392 6.62509 6.81477 6.83214 7.03420 7.37571 7.46172 7.55314 7.66733 7.79315 8.12995 8.69756 9.36530 9.48826 10.83358 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024657 B = 0.002521 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.288432 B =11105.323572 C =11403.051436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.010 4.010 5 C -0.109 4.109 6 C -0.029 4.029 7 C -0.667 4.667 8 S 2.502 3.498 9 C -0.651 4.651 10 O -0.939 6.939 11 O -0.942 6.942 12 C -0.028 4.028 13 C -0.141 4.141 14 N -0.519 5.519 15 C 0.044 3.956 16 C -0.144 4.144 17 C 0.253 3.747 18 O -0.579 6.579 19 C -0.538 4.538 20 H 0.060 0.940 21 C 0.072 3.928 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.062 3.938 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.377 0.623 43 H 0.267 0.733 44 H 0.072 0.928 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -3.329 20.457 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.006 4.006 3 H 0.068 0.932 4 C -0.010 4.010 5 C -0.128 4.128 6 C -0.048 4.048 7 C -0.755 4.755 8 S 2.682 3.318 9 C -0.801 4.801 10 O -0.936 6.936 11 O -0.939 6.939 12 C -0.047 4.047 13 C -0.160 4.160 14 N -0.243 5.243 15 C -0.084 4.084 16 C -0.183 4.183 17 C 0.212 3.788 18 O -0.387 6.387 19 C -0.576 4.576 20 H 0.078 0.922 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.065 4.065 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.226 0.774 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.470 -4.163 20.911 22.282 hybrid contribution 0.189 2.035 -1.371 2.461 sum -6.281 -2.128 19.540 20.635 Atomic orbital electron populations 1.21821 0.93201 1.02808 1.01787 1.20888 0.95929 0.95049 0.88760 0.93193 1.20288 0.92205 0.94355 0.94178 1.21295 0.99153 0.94263 0.98124 1.20968 0.92127 1.00005 0.91676 1.30328 1.20556 1.05240 1.19387 1.05022 0.76710 0.74639 0.75415 1.30236 1.21955 1.12098 1.15766 1.93588 1.77684 1.43174 1.79185 1.93575 1.60231 1.63024 1.77062 1.20802 0.93260 0.92187 0.98421 1.21178 1.01030 1.00255 0.93542 1.63697 1.09096 1.50678 1.00871 1.22830 0.87022 1.00347 0.98158 1.23261 1.01808 0.99366 0.93884 1.19516 0.88203 0.82194 0.88843 1.86135 1.50920 1.35207 1.66407 1.21484 1.07722 1.14644 1.13786 0.92221 1.24997 0.94751 0.95958 0.97351 1.69725 1.10762 1.36645 1.36121 0.86539 0.77615 0.81841 0.81305 1.20232 1.21134 1.20038 1.22988 0.99472 0.95682 0.88368 0.91626 0.92642 0.91570 0.83827 0.84326 0.84978 0.85235 0.85077 0.84473 0.85357 0.91588 0.94636 0.92707 0.90393 0.77385 0.92287 0.90993 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.06 37.16 0.34 -1.41 16 2 C 0.10 1.51 1.86 -68.86 -0.13 1.38 16 3 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 4 C -0.01 -0.13 3.72 -104.63 -0.39 -0.52 16 5 C -0.11 -1.44 8.99 -39.59 -0.36 -1.80 16 6 C -0.03 -0.34 9.47 -39.58 -0.37 -0.71 16 7 C -0.67 -7.15 5.66 -39.58 -0.22 -7.38 16 8 S 2.50 22.37 5.80 -107.50 -0.62 21.75 16 9 C -0.65 -2.81 10.80 101.05 1.09 -1.72 16 10 O -0.94 -11.60 17.13 -57.54 -0.99 -12.58 16 11 O -0.94 -11.34 17.13 -57.54 -0.99 -12.32 16 12 C -0.03 -0.30 9.47 -39.58 -0.37 -0.68 16 13 C -0.14 -1.66 9.67 -39.59 -0.38 -2.04 16 14 N -0.52 -9.38 4.34 -224.67 -0.98 -10.35 16 15 C 0.04 0.85 5.99 -2.84 -0.02 0.83 16 16 C -0.14 -3.28 5.38 -24.91 -0.13 -3.42 16 17 C 0.25 6.11 0.87 -89.63 -0.08 6.04 16 18 O -0.58 -14.85 13.16 -35.23 -0.46 -15.31 16 19 C -0.54 -14.13 8.27 -34.44 -0.28 -14.42 16 20 H 0.06 1.55 7.79 -52.49 -0.41 1.14 16 21 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 22 N -0.89 -23.66 10.75 55.43 0.60 -23.06 16 23 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.06 1.27 4.57 -2.30 -0.01 1.26 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.86 7.04 -51.94 -0.37 0.50 16 31 H 0.14 1.98 7.73 -52.49 -0.41 1.58 16 32 H 0.14 1.37 7.57 -52.49 -0.40 0.97 16 33 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 35 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.14 1.20 7.57 -52.49 -0.40 0.80 16 37 H 0.13 1.29 8.04 -52.48 -0.42 0.87 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.04 0.65 7.04 -51.93 -0.37 0.28 16 40 H 0.05 1.29 8.03 -51.93 -0.42 0.87 16 41 H 0.08 1.91 7.54 -51.93 -0.39 1.52 16 42 H 0.38 9.81 7.56 45.56 0.34 10.15 16 43 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.05 0.95 7.47 -51.93 -0.39 0.56 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -32.54 374.86 -10.35 -42.89 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.12 Total: 10.72 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -1.42 Total: -22.79 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: -0.38 Total: -33.42 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -2.43 Total: -40.22 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 22.37 SS G_CDS: -0.62 Total: 21.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.54 -10.35 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.344 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds