Wall clock time and date at job start Tue Mar 31 2020 23:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47087 * 2 1 4 4 C 1.50697 * 109.47224 * 120.00605 * 2 1 3 5 5 C 1.38228 * 120.00218 * 79.72856 * 4 2 1 6 6 C 1.38237 * 120.00185 * 179.80825 * 5 4 2 7 7 C 1.38230 * 119.99752 * 0.39542 * 6 5 4 8 8 S 1.76200 * 120.00153 * 179.83680 * 7 6 5 9 9 C 1.81407 * 104.44624 * 270.02196 * 8 7 6 10 10 O 1.42100 * 104.27846 * 26.08813 * 8 7 6 11 11 O 1.42093 * 104.27920 * 153.95066 * 8 7 6 12 12 C 1.38238 * 120.00055 * 359.85652 * 7 6 5 13 13 C 1.38230 * 119.99832 * 359.95593 * 12 7 6 14 14 N 1.46904 * 109.46705 * 240.00756 * 2 1 3 15 15 C 1.47440 * 110.99676 * 180.12582 * 14 2 1 16 16 C 1.54317 * 107.23368 * 236.73977 * 15 14 2 17 17 C 1.55144 * 103.01861 * 337.71644 * 16 15 14 18 18 O 1.42902 * 110.99037 * 277.56168 * 17 16 15 19 19 C 1.50699 * 110.99303 * 153.74518 * 17 16 15 20 20 H 1.08002 * 119.99703 * 241.45490 * 19 17 16 21 21 C 1.37875 * 120.00351 * 61.45341 * 19 17 16 22 22 N 1.31515 * 119.99669 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00439 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46785 * 60.00074 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47258 * 300.00496 * 23 21 19 27 27 C 1.47842 * 111.00238 * 59.27972 * 14 2 1 28 28 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46799 * 299.99287 * 1 2 3 30 30 H 1.08988 * 109.47194 * 59.99658 * 1 2 3 31 31 H 1.07999 * 120.00079 * 359.97438 * 5 4 2 32 32 H 1.08002 * 120.00298 * 180.22966 * 6 5 4 33 33 H 1.09000 * 109.47254 * 59.99661 * 9 8 7 34 34 H 1.09005 * 109.46940 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.46861 * 299.99576 * 9 8 7 36 36 H 1.07997 * 119.99875 * 179.97438 * 12 7 6 37 37 H 1.08007 * 119.99759 * 180.02562 * 13 12 7 38 38 H 1.09000 * 109.89463 * 117.33566 * 15 14 2 39 39 H 1.09000 * 109.88994 * 356.14383 * 15 14 2 40 40 H 1.08999 * 110.70846 * 96.09223 * 16 15 14 41 41 H 1.09000 * 110.71111 * 219.33808 * 16 15 14 42 42 H 0.96696 * 114.00297 * 298.54765 * 18 17 16 43 43 H 0.96998 * 120.00060 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.37187 * 265.19138 * 27 14 2 45 45 H 1.09002 * 110.37256 * 27.42242 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.0616 -2.0920 1.2672 6 6 2.5261 -2.7437 2.3944 7 6 2.9538 -2.0140 3.4877 8 16 3.5419 -2.8446 4.9260 9 6 2.0623 -3.0817 5.9484 10 8 4.0174 -4.0925 4.4402 11 8 4.4237 -1.9109 5.5340 12 6 2.9197 -0.6324 3.4528 13 6 2.4589 0.0192 2.3242 14 7 2.0196 -0.6924 -1.1996 15 6 3.4935 -0.7147 -1.2322 16 6 3.9315 -0.0571 -2.5577 17 6 2.6765 -0.2127 -3.4565 18 8 2.6305 -1.5114 -4.0510 19 6 2.6307 0.8632 -4.5107 20 1 1.8065 1.5607 -4.5348 21 6 3.6408 0.9571 -5.4443 22 7 4.6442 0.1074 -5.4152 23 14 3.5836 2.2902 -6.7515 24 1 3.5738 3.6239 -6.0983 25 1 4.7780 2.1771 -7.6266 26 1 2.3539 2.1302 -7.5684 27 6 1.5315 -0.0319 -2.4289 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8898 31 1 1.7240 -2.6622 0.4144 32 1 2.5524 -3.8231 2.4218 33 1 1.3347 -3.6811 5.4012 34 1 2.3360 -3.5953 6.8701 35 1 1.6271 -2.1116 6.1882 36 1 3.2535 -0.0623 4.3071 37 1 2.4327 1.0986 2.2968 38 1 3.8498 -1.7441 -1.1935 39 1 3.8917 -0.1502 -0.3890 40 1 4.1684 0.9959 -2.4058 41 1 4.7817 -0.5864 -2.9881 42 1 3.3812 -1.7065 -4.6284 43 1 5.3551 0.1736 -6.0718 44 1 0.6223 -0.5167 -2.7847 45 1 1.3488 1.0267 -2.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:06 Heat of formation + Delta-G solvation = -107.878846 kcal Electronic energy + Delta-G solvation = -27725.099459 eV Core-core repulsion = 23833.971815 eV Total energy + Delta-G solvation = -3891.127644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.05982 -39.61410 -38.10485 -37.02353 -36.87614 -34.20242 -34.05293 -31.99601 -31.33143 -30.23052 -30.00284 -29.03193 -26.78091 -24.78025 -23.78436 -22.70176 -21.45308 -20.92442 -19.96930 -19.03635 -18.70899 -17.39223 -17.14244 -16.93330 -16.92061 -16.63666 -16.21104 -15.83251 -15.53691 -15.45204 -14.71422 -14.50748 -14.31053 -14.26908 -14.02526 -13.89780 -13.83645 -13.69277 -13.43844 -13.18383 -13.11098 -13.07856 -13.00366 -12.76142 -12.71602 -12.52409 -12.33008 -12.24571 -12.19324 -12.02970 -11.93463 -11.70607 -11.43441 -11.10922 -10.61335 -10.16345 -10.03088 -9.95212 -9.21692 -8.22630 -6.38789 -0.81277 -0.14808 0.37571 1.39917 1.41276 1.48675 1.96192 2.36257 2.46615 2.99471 3.05382 3.09993 3.23345 3.59160 3.83415 3.95824 4.01064 4.05247 4.15037 4.15784 4.19428 4.29909 4.37835 4.41083 4.46768 4.58479 4.71351 4.75856 4.79777 4.90691 4.91010 4.99863 5.03307 5.05521 5.14236 5.17722 5.27450 5.28743 5.45852 5.52550 5.55892 5.78029 5.89725 5.93702 6.20158 6.25912 6.67106 7.32868 7.43509 8.82253 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024657 B = 0.002521 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.288432 B =11105.323572 C =11403.051436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.102 3.898 3 H 0.049 0.951 4 C -0.026 4.026 5 C -0.123 4.123 6 C -0.036 4.036 7 C -0.666 4.666 8 S 2.507 3.493 9 C -0.621 4.621 10 O -0.981 6.981 11 O -0.978 6.978 12 C -0.031 4.031 13 C -0.144 4.144 14 N -0.518 5.518 15 C 0.058 3.942 16 C -0.136 4.136 17 C 0.235 3.765 18 O -0.587 6.587 19 C -0.561 4.561 20 H 0.056 0.944 21 C 0.030 3.970 22 N -0.911 5.911 23 Si 0.959 3.041 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.273 1.273 27 C 0.074 3.926 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.371 0.629 43 H 0.268 0.732 44 H 0.067 0.933 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 -2.723 22.861 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.006 4.006 3 H 0.067 0.933 4 C -0.026 4.026 5 C -0.142 4.142 6 C -0.055 4.055 7 C -0.752 4.752 8 S 2.690 3.310 9 C -0.775 4.775 10 O -0.978 6.978 11 O -0.975 6.975 12 C -0.050 4.050 13 C -0.163 4.163 14 N -0.242 5.242 15 C -0.070 4.070 16 C -0.175 4.175 17 C 0.195 3.805 18 O -0.394 6.394 19 C -0.599 4.599 20 H 0.074 0.926 21 C -0.171 4.171 22 N -0.550 5.550 23 Si 0.784 3.216 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.198 1.198 27 C -0.054 4.054 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.163 0.837 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.219 0.781 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.793 -3.541 23.286 24.810 hybrid contribution 0.571 1.800 -2.004 2.753 sum -7.221 -1.741 21.282 22.542 Atomic orbital electron populations 1.21793 0.91565 1.03013 1.02690 1.20976 0.97292 0.94692 0.87685 0.93298 1.20184 0.93819 0.94414 0.94226 1.21256 1.00174 0.94379 0.98423 1.21125 0.92064 1.00783 0.91508 1.30638 1.19114 1.05483 1.19979 1.04822 0.78073 0.73051 0.75023 1.30011 1.18086 1.14361 1.15066 1.93536 1.79858 1.44234 1.80192 1.93528 1.63137 1.63745 1.77090 1.21119 0.92593 0.92435 0.98806 1.21389 1.00496 1.01160 0.93230 1.63634 1.07953 1.51239 1.01402 1.22628 0.88052 0.99688 0.96605 1.23064 1.00530 0.98471 0.95433 1.19785 0.90275 0.81094 0.89364 1.86130 1.50689 1.36167 1.66426 1.21789 1.07870 1.15354 1.14925 0.92562 1.25704 0.94441 0.97860 0.99116 1.69827 1.11024 1.37622 1.36557 0.85605 0.77540 0.79524 0.78900 1.19689 1.20794 1.19846 1.22785 0.97956 0.96098 0.88529 0.91774 0.90046 0.92303 0.85171 0.83192 0.82936 0.82765 0.82635 0.82325 0.83699 0.92244 0.93323 0.93915 0.92746 0.78103 0.92288 0.91416 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.06 71.98 0.65 -2.51 16 2 C 0.10 2.89 1.86 44.17 0.08 2.98 16 3 H 0.05 1.41 7.96 -2.39 -0.02 1.39 16 4 C -0.03 -0.66 3.72 -19.87 -0.07 -0.74 16 5 C -0.12 -3.20 8.99 22.27 0.20 -3.00 16 6 C -0.04 -0.81 9.47 22.27 0.21 -0.59 16 7 C -0.67 -13.12 5.66 22.27 0.13 -13.00 16 8 S 2.51 40.09 5.80 -56.49 -0.33 39.76 16 9 C -0.62 -2.56 10.80 113.37 1.22 -1.33 16 10 O -0.98 -23.46 17.13 -127.65 -2.19 -25.65 16 11 O -0.98 -22.14 17.13 -127.65 -2.19 -24.33 16 12 C -0.03 -0.60 9.47 22.27 0.21 -0.39 16 13 C -0.14 -3.11 9.67 22.27 0.22 -2.89 16 14 N -0.52 -18.73 4.34 -864.73 -3.76 -22.48 16 15 C 0.06 2.28 5.99 86.65 0.52 2.80 16 16 C -0.14 -6.36 5.38 31.78 0.17 -6.19 16 17 C 0.23 11.62 0.87 -10.15 -0.01 11.61 16 18 O -0.59 -31.00 13.16 -148.98 -1.96 -32.96 16 19 C -0.56 -29.95 8.27 25.60 0.21 -29.74 16 20 H 0.06 2.96 7.79 -2.91 -0.02 2.93 16 21 C 0.03 1.56 5.29 84.65 0.45 2.01 16 22 N -0.91 -49.19 10.75 21.45 0.23 -48.96 16 23 Si 0.96 42.07 29.54 68.60 2.03 44.09 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.07 3.06 4.57 86.77 0.40 3.45 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.47 7.04 -2.39 -0.02 1.45 16 31 H 0.13 3.65 7.73 -2.91 -0.02 3.63 16 32 H 0.15 2.87 7.57 -2.91 -0.02 2.85 16 33 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.16 2.34 7.57 -2.91 -0.02 2.32 16 37 H 0.15 2.56 8.04 -2.91 -0.02 2.54 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.05 1.77 7.04 -2.39 -0.02 1.75 16 40 H 0.04 2.05 8.03 -2.39 -0.02 2.03 16 41 H 0.05 2.77 7.54 -2.39 -0.02 2.75 16 42 H 0.37 20.06 7.56 -74.06 -0.56 19.50 16 43 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 45 H 0.05 2.09 7.47 -2.39 -0.02 2.07 16 Total: -1.00 -71.64 374.86 -3.14 -74.79 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.43 Total: 33.28 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 4.58 Total: -37.53 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -3.52 Total: -71.45 kcal Atomic # 8 Polarization: -76.61 SS G_CDS: -6.33 Total: -82.94 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 40.09 SS G_CDS: -0.33 Total: 39.76 kcal Total: -71.64 -3.14 -74.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.094 kcal (2) G-P(sol) polarization free energy of solvation -71.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds