Wall clock time and date at job start Tue Mar 31 2020 23:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47699 * 2 1 4 4 C 1.50698 * 109.47500 * 120.00193 * 2 1 3 5 5 C 1.38233 * 119.99916 * 260.00403 * 4 2 1 6 6 C 1.38238 * 120.00031 * 179.97438 * 5 4 2 7 7 C 1.38233 * 119.99955 * 359.97390 * 6 5 4 8 8 S 1.76199 * 120.00287 * 180.02562 * 7 6 5 9 9 C 1.81406 * 104.45046 * 89.99572 * 8 7 6 10 10 O 1.42107 * 104.27263 * 333.92740 * 8 7 6 11 11 O 1.42096 * 104.27948 * 206.06651 * 8 7 6 12 12 C 1.38233 * 119.99981 * 0.27098 * 7 6 5 13 13 C 1.38232 * 119.99883 * 79.97070 * 4 2 1 14 14 N 1.46909 * 109.47192 * 240.00222 * 2 1 3 15 15 C 1.47845 * 111.00047 * 180.84313 * 14 2 1 16 16 C 1.54903 * 104.79271 * 213.63246 * 15 14 2 17 17 C 1.55139 * 101.65372 * 37.07139 * 16 15 14 18 18 O 1.42898 * 110.70429 * 82.72817 * 17 16 15 19 19 C 1.50702 * 110.85505 * 205.89004 * 17 16 15 20 20 H 1.07996 * 119.99909 * 20.82788 * 19 17 16 21 21 C 1.37881 * 120.00027 * 200.82306 * 19 17 16 22 22 N 1.31509 * 120.00243 * 173.62867 * 21 19 17 23 23 Si 1.86803 * 119.99756 * 353.62942 * 21 19 17 24 24 H 1.48502 * 109.46951 * 86.34389 * 23 21 19 25 25 H 1.48501 * 109.47121 * 206.33654 * 23 21 19 26 26 H 1.48496 * 109.47420 * 326.34007 * 23 21 19 27 27 C 1.47441 * 110.99839 * 59.99698 * 14 2 1 28 28 H 1.09002 * 109.47330 * 300.00517 * 1 2 3 29 29 H 1.09007 * 109.47393 * 59.99530 * 1 2 3 30 30 H 1.08995 * 109.47643 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00183 * 359.96453 * 5 4 2 32 32 H 1.08001 * 120.00113 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.46975 * 300.00021 * 9 8 7 34 34 H 1.08998 * 109.46782 * 59.99976 * 9 8 7 35 35 H 1.08997 * 109.47053 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.00077 * 179.72759 * 12 7 6 37 37 H 1.07994 * 120.00496 * 0.02562 * 13 4 2 38 38 H 1.08992 * 110.37540 * 332.46585 * 15 14 2 39 39 H 1.09006 * 110.37100 * 94.80601 * 15 14 2 40 40 H 1.08998 * 110.99510 * 278.97873 * 16 15 14 41 41 H 1.09007 * 111.02140 * 155.17842 * 16 15 14 42 42 H 0.96703 * 114.00346 * 61.06133 * 18 17 16 43 43 H 0.96997 * 120.00529 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.88797 * 242.66945 * 27 14 2 45 45 H 1.08995 * 109.89014 * 3.69387 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.4587 0.0194 2.3242 6 6 2.9191 -0.6323 3.4531 7 6 2.9526 -2.0137 3.4883 8 16 3.5388 -2.8445 4.9274 9 6 2.0580 -3.0808 5.9484 10 8 4.4204 -1.9109 5.5361 11 8 4.0143 -4.0925 4.4423 12 6 2.5310 -2.7435 2.3926 13 6 2.0662 -2.0919 1.2654 14 7 2.0196 -0.6925 -1.1995 15 6 3.4974 -0.7298 -1.2236 16 6 3.8710 -0.6370 -2.7240 17 6 2.7946 0.3461 -3.2547 18 8 3.1814 1.6996 -3.0089 19 6 2.5432 0.1243 -4.7240 20 1 2.8088 -0.8174 -5.1811 21 6 1.9739 1.1235 -5.4846 22 7 1.8691 0.9794 -6.7875 23 14 1.3515 2.6821 -4.6642 24 1 2.4681 3.6524 -4.5335 25 1 0.2714 3.2789 -5.4903 26 1 0.8204 2.3541 -3.3168 27 6 1.5468 -0.0239 -2.4256 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.4323 1.0987 2.2968 32 1 3.2526 -0.0621 4.3075 33 1 1.6230 -2.1104 6.1875 34 1 1.3308 -3.6799 5.4004 35 1 2.3307 -3.5935 6.8707 36 1 2.5613 -3.8228 2.4184 37 1 1.7330 -2.6621 0.4109 38 1 3.9074 0.1194 -0.6771 39 1 3.8603 -1.6661 -0.7994 40 1 3.7847 -1.6094 -3.2088 41 1 4.8725 -0.2263 -2.8529 42 1 4.0066 1.9578 -3.4421 43 1 1.4683 1.6822 -7.3226 44 1 0.9104 -0.7010 -2.9953 45 1 0.9907 0.8768 -2.1659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:10 Heat of formation + Delta-G solvation = -105.567325 kcal Electronic energy + Delta-G solvation = -27909.459271 eV Core-core repulsion = 24018.431863 eV Total energy + Delta-G solvation = -3891.027408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.15527 -39.80962 -38.09813 -37.23156 -36.91804 -34.47458 -34.30348 -32.00245 -31.45613 -30.30221 -30.20999 -29.13575 -26.71017 -24.77067 -23.78409 -22.84235 -21.61269 -20.93183 -19.96681 -19.33832 -18.74687 -17.58764 -17.33304 -17.09496 -16.97407 -16.68709 -16.22838 -15.72858 -15.53397 -15.32653 -15.11759 -14.79013 -14.46057 -14.34088 -14.12875 -13.96226 -13.89766 -13.82327 -13.66343 -13.55028 -13.10441 -13.04186 -12.99744 -12.86523 -12.57189 -12.44658 -12.29555 -12.26175 -12.05821 -12.00217 -11.96189 -11.87402 -11.44140 -11.21120 -10.64210 -10.38538 -10.08291 -9.95162 -9.29453 -8.35989 -6.47636 -0.81059 -0.15210 0.37347 1.43937 1.45703 1.64988 1.96841 2.39845 2.45501 2.95455 2.98162 3.09445 3.23862 3.47510 3.59844 3.83644 3.94652 4.01870 4.15060 4.16650 4.20187 4.28899 4.30926 4.37716 4.44493 4.49108 4.58036 4.65801 4.76306 4.79464 4.90910 4.98104 5.00190 5.02905 5.06728 5.14257 5.18275 5.23290 5.26948 5.38262 5.54963 5.57502 5.89481 5.95696 6.06686 6.18182 6.59847 6.96016 7.30101 8.77668 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027991 B = 0.002665 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.076172 B =10503.116228 C =10743.537246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.105 3.895 3 H 0.044 0.956 4 C -0.024 4.024 5 C -0.144 4.144 6 C -0.030 4.030 7 C -0.665 4.665 8 S 2.509 3.491 9 C -0.623 4.623 10 O -0.978 6.978 11 O -0.979 6.979 12 C -0.034 4.034 13 C -0.122 4.122 14 N -0.519 5.519 15 C 0.056 3.944 16 C -0.138 4.138 17 C 0.202 3.798 18 O -0.570 6.570 19 C -0.544 4.544 20 H 0.040 0.960 21 C 0.024 3.976 22 N -0.938 5.938 23 Si 1.000 3.000 24 H -0.282 1.282 25 H -0.333 1.333 26 H -0.259 1.259 27 C 0.062 3.938 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.380 0.620 43 H 0.266 0.734 44 H 0.073 0.927 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -5.090 27.953 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.004 4.004 3 H 0.062 0.938 4 C -0.025 4.025 5 C -0.163 4.163 6 C -0.049 4.049 7 C -0.751 4.751 8 S 2.692 3.308 9 C -0.777 4.777 10 O -0.975 6.975 11 O -0.976 6.976 12 C -0.053 4.053 13 C -0.141 4.141 14 N -0.244 5.244 15 C -0.071 4.071 16 C -0.176 4.176 17 C 0.161 3.839 18 O -0.379 6.379 19 C -0.582 4.582 20 H 0.058 0.942 21 C -0.175 4.175 22 N -0.577 5.577 23 Si 0.833 3.167 24 H -0.209 1.209 25 H -0.265 1.265 26 H -0.184 1.184 27 C -0.066 4.066 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.229 0.771 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.365 -5.788 28.307 28.989 hybrid contribution -0.123 1.810 -1.534 2.376 sum -2.488 -3.978 26.773 27.181 Atomic orbital electron populations 1.21855 0.92161 1.03210 1.02301 1.20888 0.96847 0.94686 0.87949 0.93766 1.20128 0.93880 0.94512 0.93981 1.21354 1.00567 1.01009 0.93360 1.21093 0.92594 0.92504 0.98679 1.30630 1.19130 1.05368 1.19996 1.04765 0.77954 0.73061 0.75001 1.30023 1.18291 1.14280 1.15138 1.93533 1.63109 1.63784 1.77103 1.93537 1.79770 1.44144 1.80178 1.21146 0.91922 1.00846 0.91380 1.21276 1.00066 0.94083 0.98660 1.63768 1.09019 1.50464 1.01125 1.22898 0.87548 1.00661 0.96030 1.23158 0.99142 1.00255 0.95090 1.20308 0.91980 0.79203 0.92366 1.86077 1.45377 1.30720 1.75755 1.21514 1.42041 1.01189 0.93468 0.94151 1.25855 0.94478 1.02338 0.94836 1.70087 1.45075 1.35806 1.06709 0.84916 0.76357 0.78320 0.77123 1.20908 1.26476 1.18450 1.23035 0.97011 0.96786 0.89767 0.90241 0.93076 0.91167 0.84181 0.82514 0.82795 0.82941 0.82866 0.82967 0.84602 0.93875 0.90039 0.91626 0.90612 0.77081 0.92514 0.90859 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.04 71.98 0.65 -2.72 16 2 C 0.10 2.88 1.86 44.16 0.08 2.96 16 3 H 0.04 1.32 7.97 -2.39 -0.02 1.30 16 4 C -0.02 -0.58 4.10 -19.87 -0.08 -0.66 16 5 C -0.14 -2.91 9.67 22.27 0.22 -2.70 16 6 C -0.03 -0.54 9.47 22.27 0.21 -0.32 16 7 C -0.67 -11.64 5.66 22.27 0.13 -11.51 16 8 S 2.51 35.56 5.80 -56.49 -0.33 35.23 16 9 C -0.62 -1.89 10.80 113.37 1.22 -0.66 16 10 O -0.98 -20.58 17.13 -127.65 -2.19 -22.76 16 11 O -0.98 -21.26 17.12 -127.65 -2.19 -23.45 16 12 C -0.03 -0.66 9.47 22.27 0.21 -0.45 16 13 C -0.12 -2.76 8.65 22.27 0.19 -2.56 16 14 N -0.52 -17.01 4.34 -864.77 -3.75 -20.76 16 15 C 0.06 1.80 5.62 86.77 0.49 2.29 16 16 C -0.14 -5.15 6.23 31.98 0.20 -4.95 16 17 C 0.20 8.77 0.68 -10.36 -0.01 8.77 16 18 O -0.57 -23.69 8.88 -148.98 -1.32 -25.01 16 19 C -0.54 -29.49 8.71 25.60 0.22 -29.27 16 20 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 21 C 0.02 1.37 5.46 84.66 0.46 1.84 16 22 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 23 Si 1.00 47.82 24.90 68.60 1.71 49.53 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.33 -16.38 7.11 99.48 0.71 -15.67 16 26 H -0.26 -11.82 5.18 99.48 0.52 -11.30 16 27 C 0.06 2.48 4.92 86.65 0.43 2.90 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.41 6.50 -2.38 -0.02 1.40 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.14 2.43 8.04 -2.91 -0.02 2.40 16 32 H 0.16 2.12 7.57 -2.91 -0.02 2.10 16 33 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.15 2.44 7.56 -2.91 -0.02 2.42 16 37 H 0.14 3.21 7.72 -2.91 -0.02 3.19 16 38 H 0.04 1.37 7.77 -2.39 -0.02 1.35 16 39 H 0.08 2.43 7.74 -2.38 -0.02 2.41 16 40 H 0.07 2.58 7.99 -2.39 -0.02 2.56 16 41 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 42 H 0.38 14.06 9.07 -74.06 -0.67 13.39 16 43 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 44 H 0.07 3.19 7.82 -2.39 -0.02 3.17 16 45 H 0.05 2.17 4.50 -2.39 -0.01 2.16 16 Total: -1.00 -77.12 367.24 -3.01 -80.13 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.14 Total: 21.19 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 4.62 Total: -37.06 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -3.45 Total: -77.80 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: -5.69 Total: -71.23 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.71 Total: 49.53 kcal Atomic # 16 Polarization: 35.56 SS G_CDS: -0.33 Total: 35.23 kcal Total: -77.12 -3.01 -80.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.436 kcal (2) G-P(sol) polarization free energy of solvation -77.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds